View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21367_low_18 (Length: 249)
Name: NF21367_low_18
Description: NF21367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21367_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 28674781 - 28675022
Alignment:
| Q |
1 |
tgcaagtgtgtccctccaatcagcagattggtcttggtaaagagtaaaattggaaagataaacaacttttttggtgagatcacgggtgtagtactccttc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28674781 |
tgcaagtgtgtccctccaatcagcagattggtcttggtaaagagtaaaattggagagataaacaacttttttggtgagatcacgggtgtagtactccttc |
28674880 |
T |
|
| Q |
101 |
ctcaccttggcatcttgttggtgaaatctacaagttccattgatcatgtcatccaaaatatgtgttggaattccatgatttattacttgaaagaatcccc |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
28674881 |
ctcgccttggcatcttgttggtgaaatctacaagttcctttgatcatctcatccaaaatatgtgttggaattccatgatttatcacttgaaagaatcccc |
28674980 |
T |
|
| Q |
201 |
atttctcacttgcattttgaacttttctcacaacttcatctc |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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| T |
28674981 |
atttctcacttgcattttgaacttttctcacaacttcatctc |
28675022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 28670637 - 28670878
Alignment:
| Q |
1 |
tgcaagtgtgtccctccaatcagcagattggtcttggtaaagagtaaaattggaaagataaacaacttttttggtgagatcacgggtgtagtactccttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
28670637 |
tgcaagtgtgtccctccaatcagcagattggtctaggtagagagtaaaattggaaagataaacaacttttttggtaagatcacgggtgtagtactccttc |
28670736 |
T |
|
| Q |
101 |
ctcaccttggcatcttgttggtgaaatctacaagttccattgatcatgtcatccaaaatatgtgttggaattccatgatttattacttgaaagaatcccc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
28670737 |
ctcaccttggcatcttgttggtgaaatctacaagttccattgatcatctcatccaaaatctgtgttggaattccatgatttattacttgaaagaatcccc |
28670836 |
T |
|
| Q |
201 |
atttctcacttgcattttgaacttttctcacaacttcatctc |
242 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
28670837 |
atttctcacttgcatttcgaacttttcttacaacttcatctc |
28670878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 28642054 - 28642295
Alignment:
| Q |
1 |
tgcaagtgtgtccctccaatcagcagattggtcttggtaaagagtaaaattggaaagataaacaacttttttggtgagatcacgggtgtagtactccttc |
100 |
Q |
| |
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|||||||||||||||||| ||||||||||| |||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||| |
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| T |
28642054 |
tgcaagtgtgtccctccactcagcagattgatcttcggaaagagtaaaattggaaagataaacaacttttttagtgagatcacgggtgtaatactctttc |
28642153 |
T |
|
| Q |
101 |
ctcaccttggcatcttgttggtgaaatctacaagttccattgatcatgtcatccaaaatatgtgttggaattccatgatttattacttgaaagaatcccc |
200 |
Q |
| |
|
|||||||| | ||| ||||| ||||||||||||||||| |||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||| |
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| T |
28642154 |
ctcaccttaggatcctgttgatgaaatctacaagttcctttgatcatctcatccaaaacatgaactggaattccatgatttattacttgaaagaatcccc |
28642253 |
T |
|
| Q |
201 |
atttctcacttgcattttgaacttttctcacaacttcatctc |
242 |
Q |
| |
|
||||||||| |||||||| || || ||||||||||||||||| |
|
|
| T |
28642254 |
atttctcacatgcattttcaagttgtctcacaacttcatctc |
28642295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 28650915 - 28651156
Alignment:
| Q |
1 |
tgcaagtgtgtccctccaatcagcagattggtcttggtaaagagtaaaattggaaagataaacaacttttttggtgagatcacgggtgtagtactccttc |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||| |
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| T |
28650915 |
tgcaagtgtgtccctccactcagcagattgatcttcggaaagagtaaaattggaaagataaacaacttttttagtgagatcacgggtgtaatactctttc |
28651014 |
T |
|
| Q |
101 |
ctcaccttggcatcttgttggtgaaatctacaagttccattgatcatgtcatccaaaatatgtgttggaattccatgatttattacttgaaagaatcccc |
200 |
Q |
| |
|
|||||||| | ||| ||||| ||||||||||||||||| |||||||| |||| ||||| ||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
28651015 |
ctcaccttaggatcctgttgatgaaatctacaagttcctttgatcatctcatgcaaaacatgaactggaattccatgatttattacttgaaagaatcccc |
28651114 |
T |
|
| Q |
201 |
atttctcacttgcattttgaacttttctcacaacttcatctc |
242 |
Q |
| |
|
||||||||| |||||||| || || ||||||||||||||||| |
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|
| T |
28651115 |
atttctcacatgcattttcaagttgtctcacaacttcatctc |
28651156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 3 - 241
Target Start/End: Original strand, 28696144 - 28696382
Alignment:
| Q |
3 |
caagtgtgtccctccaatcagcagattggtcttggtaaagagtaaaattggaaagataaacaacttttttggtgagatcacgggtgtagtactccttcct |
102 |
Q |
| |
|
|||||| ||||||||||| ||||| | || ||||||||| || |||| |||| |||||||||||| ||| || |||| | || || ||||| || || |
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| T |
28696144 |
caagtgagtccctccaattagcagcaggatcatggtaaagactataattagaaacataaacaactttcttgttgggatcgcatgtataatactcttttct |
28696243 |
T |
|
| Q |
103 |
caccttggcatcttgttggtgaaatctacaagttccattgatcatgtcatccaaaatatgtgttggaattccatgatttattacttgaaagaatccccat |
202 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
28696244 |
caccttggcatcttgttgatgaaatctacaagttcctttgatcatctcatccaaaatttgtgttggaattccatgatttattacttgaaagaatccccaa |
28696343 |
T |
|
| Q |
203 |
ttctcacttgcattttgaacttttctcacaacttcatct |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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| T |
28696344 |
ttctcacttgcattttgaacttttctcacaacttcatct |
28696382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 3 - 242
Target Start/End: Original strand, 28691259 - 28691498
Alignment:
| Q |
3 |
caagtgtgtccctccaatcagcagattggtcttggtaaagagtaaaattggaaagataaacaacttttttggtgagatcacgggtgtagtactccttcct |
102 |
Q |
| |
|
|||||| ||||||||||| ||||| | || ||||||||| || |||| |||| ||||||||||| ||| | ||||||| ||||| ||||| ||||| |
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|
| T |
28691259 |
caagtgagtccctccaattagcagcaggatcatggtaaagactataattagaaacgtaaacaactttcttgttaggatcacgtgtgtaatactctttcct |
28691358 |
T |
|
| Q |
103 |
caccttggcatcttgttggtgaaatctacaagttccattgatcatgtcatccaaaatatgtgttggaattccatgatttattacttgaaagaatccccat |
202 |
Q |
| |
|
||| | |||||||||| ||||||||||||||||| |||||||| |||||||||| ||| | || ||||||||||||||||||||||||||||||||| |
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|
| T |
28691359 |
taccataacatcttgttgatgaaatctacaagttcctttgatcatctcatccaaaacatgagctgaaattccatgatttattacttgaaagaatccccac |
28691458 |
T |
|
| Q |
203 |
ttctcacttgcattttgaacttttctcacaacttcatctc |
242 |
Q |
| |
|
||||||| |||||||| ||||||||||||| ||||||||| |
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|
| T |
28691459 |
ttctcacatgcattttcaacttttctcacagcttcatctc |
28691498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 48 - 192
Target Start/End: Original strand, 28717507 - 28717651
Alignment:
| Q |
48 |
aattggaaagataaacaacttttttggtgagatcacgggtgtagtactccttcctcaccttggcatcttgttggtgaaatctacaagttccattgatcat |
147 |
Q |
| |
|
|||| |||| |||||||||||| ||| | |||||| |||| ||||| ||||| ||| | |||||||||| ||||||||||||||||| |||||||| |
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|
| T |
28717507 |
aattagaaatataaacaactttcttgttaggatcacatatgtaatactctttccttaccctaacatcttgttgatgaaatctacaagttcctttgatcat |
28717606 |
T |
|
| Q |
148 |
gtcatccaaaatatgtgttggaattccatgatttattacttgaaa |
192 |
Q |
| |
|
|||||||||| ||| |||| |||||||||||||||||||||||| |
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|
| T |
28717607 |
ctcatccaaaacatgagttgaaattccatgatttattacttgaaa |
28717651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 206
Target Start/End: Complemental strand, 41238565 - 41238469
Alignment:
| Q |
110 |
gcatcttgttggtgaaatctacaagttccattgatcatgtcatccaaaatatgtgttggaattccatgatttattacttgaaagaatccccatttct |
206 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||| |||||||||| ||| |||||| |||||||| || ||||| || |||||||| |||| |
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| T |
41238565 |
gcatcttgttcatgaaatctacaaattccattgatcatctcatccaaaacatgaagtggaataccatgattgatcacttggaaaaatccccagttct |
41238469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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