View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21367_low_19 (Length: 240)
Name: NF21367_low_19
Description: NF21367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21367_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 8627998 - 8628234
Alignment:
| Q |
1 |
ataaatacaaggtgtcaaatggatttcttcttatgcacgtcacaatttttgtcctagaatgtctaacacataaaggagtgaaagtaag-------ttttt |
93 |
Q |
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| T |
8627998 |
ataaatacaaggtctcaaatggattcccgcttatttacgtcacaatttttgtgctacaatgcctaccacataaaggagagaaagtaagaataattttttt |
8628097 |
T |
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| Q |
94 |
aaggatttttt-aattcaagtactcca---ttgagaaagttaacatagtatgaaaaggctcttgatgcacgttaaaataaggaaagataaagaaacttta |
189 |
Q |
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| T |
8628098 |
aaggattttttgaattcaagtactccaatattgagaaagttaagatagtatgaaaaggctcttgatgcacgttaaaataaggaaagataaagaaacttta |
8628197 |
T |
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| Q |
190 |
aaggcaagaaattcaaagccacttttgccaactttat |
226 |
Q |
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| T |
8628198 |
aaggcaagaaattcaaagccacttttgccaactttat |
8628234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 127
Target Start/End: Complemental strand, 8833100 - 8833061
Alignment:
| Q |
89 |
tttttaaggatttttt-aattcaagtactccattgagaaa |
127 |
Q |
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| T |
8833100 |
tttttaaggattttttcaattcaagtactccattgagaaa |
8833061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 176
Target Start/End: Original strand, 48775482 - 48775647
Alignment:
| Q |
22 |
gatttcttcttatgcacgtcacaatttttgtcctagaatgtctaacacataaaggagtgaaagtaag-------tttttaaggatttttt-aattcaagt |
113 |
Q |
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| T |
48775482 |
gattccttcttatgtacgtcacaatttttgtgttggaatgtccaccacccaaaggagtgaaagtatgaataaattttttaagggctttttgaattcaagt |
48775581 |
T |
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| Q |
114 |
actccattgagaaagtta---acatagtatgaaaaggctcttgatgcacgttaaaataaggaaaga |
176 |
Q |
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| T |
48775582 |
actccattgagcaagtttgtgacacaatatgagaaggctcttgatgcacgttataacaaggaaaga |
48775647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 226
Target Start/End: Complemental strand, 44884997 - 44884857
Alignment:
| Q |
89 |
tttttaaggatttttt-aattcaagtactccattgagaaagtta---acatagtatgaaaaggctcttgatgcacgttaaaataaggaaagataaagaaa |
184 |
Q |
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|||||||||||||||| |||||||||||||||||||| ||||| ||| | ||||| || ||||||||||||||||| || ||||||| | | ||| |
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| T |
44884997 |
tttttaaggattttttgaattcaagtactccattgagcaagtttctgacacaatatgagaaagctcttgatgcacgttacaacgaggaaagggaga-aaa |
44884899 |
T |
|
| Q |
185 |
ctttaaaggcaagaaattcaaagccacttttgccaactttat |
226 |
Q |
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| T |
44884898 |
ctgtcaagacaatgaattcaaaaccacttttgcgaactttat |
44884857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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