View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21367_low_5 (Length: 452)
Name: NF21367_low_5
Description: NF21367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21367_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 417; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Complemental strand, 4363190 - 4362754
Alignment:
| Q |
1 |
ttgtatcagctaaaagcatattccaaacaagtggagtgaaactatctgccaaaatagctggaattcattggcattacaatgcaagatcacatgcaactga |
100 |
Q |
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| T |
4363190 |
ttgtatcagctaaaagcatattccaaacaagtggagtgaaactatctgccaaaatagctggaattcattggcattacaatgcaagatcacatgcaactga |
4363091 |
T |
|
| Q |
101 |
attaactgcaggttactataacacaaggtttcatgatggttatataccaatagcacaaatgcttgcaaaacatggagttatactaaatttcacatgcatg |
200 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||| |
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| T |
4363090 |
attaactgcaggttactataacacaaagtttcatgatggttatataccaatagcacaaatgctagcaaaacatggagttatattgaatttcacatgcatg |
4362991 |
T |
|
| Q |
201 |
gaaatgaaggataatgaacaaccttgtgatgcaaattgttcaccagaaggattggtaaatcaagtgagaatggcaacaaagatggcaggtggtgaacttg |
300 |
Q |
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| T |
4362990 |
gaaatgaaggataatgaacaaccttgtgatgcaaattgttcaccagaaggattggtaaatcaagtgagaatggcaacaaagattgcaggtggtgaacttg |
4362891 |
T |
|
| Q |
301 |
ctggtgagaatgctttggagagatatgattcaagtgcttatggtcaagttttgtcaacaagtggattaagtgcttttacatatctaagaataaataagag |
400 |
Q |
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| T |
4362890 |
ctggtgagaatgctttggagagatatgattcaagtgcttatggtcaagttttgtcaacaagtggattaagtgcttttacatatctaagaataaataagag |
4362791 |
T |
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| Q |
401 |
gttgcttgagggtgataattggaggaaatttgtggat |
437 |
Q |
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| T |
4362790 |
gttgcttgagggtgataattggaggaaatttgtggat |
4362754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Complemental strand, 4370993 - 4370558
Alignment:
| Q |
1 |
ttgtatcagctaaaagcatattccaaacaagtggagtgaaactatctgccaaaatagctggaattcattggcattacaatgcaagatcacatgcaactga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4370993 |
ttgtatcagctaaaagcatattccaaacaagtggagtgaaactatctgccaaaatagctggaattcattggcattacaatgcaagatcacatgcaactga |
4370894 |
T |
|
| Q |
101 |
attaactgcaggttactataacacaaggtttcatgatggttatataccaatagcacaaatgcttgcaaaacatggagttatactaaatttcacatgcatg |
200 |
Q |
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| T |
4370893 |
attaactgcaggttactataacacaaggtttcatgatggttatataccaatagcacaaatgctagcaaaacatggagttatattgaatttcacatgcatg |
4370794 |
T |
|
| Q |
201 |
gaaatgaaggataatgaacaaccttgtgatgcaaattgttcaccagaaggattggtaaatcaagtgagaatggcaacaaagatggcaggtggtgaacttg |
300 |
Q |
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| T |
4370793 |
gaaatgaaggataatgaacaacctggccatgctaattgttcaccagaaggattggtgaatcaagtgaagatggcaacaaagattgcaggtggtgaacttg |
4370694 |
T |
|
| Q |
301 |
ctggtgagaatgctttggagagatatgattcaagtgcttatggtcaagttttgtcaacaagtggattaagtgcttttacatatctaagaataaataagag |
400 |
Q |
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| T |
4370693 |
ctggtgagaatgcattggagagatatgattcaagtgcttatggtcaagttttgtctacaagtggattaagtgcttttacttatttaagaataaataagag |
4370594 |
T |
|
| Q |
401 |
gttgcttgagggtgataattggaggaaatttgtgga |
436 |
Q |
| |
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||||||||||||||| ||||||||| |||||||||| |
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| T |
4370593 |
gttgcttgagggtgaaaattggaggcaatttgtgga |
4370558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 41043863 - 41044224
Alignment:
| Q |
1 |
ttgtatcagctaaaagcatattccaaacaagtggagtgaaactatctgccaaaatagctggaattcattggcattacaatgcaagatcacatgcaactga |
100 |
Q |
| |
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|||||||||| ||| |||||||| ||| ||| ||||||||||||| ||| | || ||||| ||||||||||||| |||| || || ||| |||| |
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| T |
41043863 |
ttgtatcagccaaagaaatattccagacatctggtgtgaaactatctggtaaagttgcgggaatccattggcattacagatcaaggtcgcacgcagctga |
41043962 |
T |
|
| Q |
101 |
attaactgcaggttactataacacaaggtttcatgatggttatataccaatagcacaaatgcttgcaaaacatggagttatactaaatttcacatgcatg |
200 |
Q |
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| T |
41043963 |
actaactgctggttactataacactagacataatgatgggtatcttccaattgccaaaatgtttgcaaaccatgacgttgtcttcaatttcacctgcatg |
41044062 |
T |
|
| Q |
201 |
gaaatgaaggataatgaacaaccttgtgatgcaaattgttcaccagaaggattggtaaatcaagtgagaatggcaacaaagatggcaggtggtgaacttg |
300 |
Q |
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| T |
41044063 |
gaaatgaaagacagagaacaacctggacatgctaactgttcgccagaagggttagttcaccaagtcaagaaggcaacaaaaatggctaatatagaacttg |
41044162 |
T |
|
| Q |
301 |
ctggtgagaatgctttggagagatatgattcaagtgcttatggtcaagttttgtcaacaagt |
362 |
Q |
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|||| || ||||| ||||||||||||||||| ||| |||| ||||||||||||||||||| |
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| T |
41044163 |
ctggggaaaatgcactggagagatatgattcaggtggatatgctcaagttttgtcaacaagt |
41044224 |
T |
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