View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21367_low_6 (Length: 432)
Name: NF21367_low_6
Description: NF21367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21367_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 28 - 417
Target Start/End: Original strand, 35415354 - 35415743
Alignment:
| Q |
28 |
ccatcaatctcatcaacatactccccctttgcaaacaatcctgtaaacaacaccccccatgcgccacaccctccatgtaactgcgccgcctctaaaggat |
127 |
Q |
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| T |
35415354 |
ccataaatctcatcaacatactccccctttgcaaacaatcccgtaaacaacaccccccatgcgccacaccctccgtgtaattgcgcagcctctaatggat |
35415453 |
T |
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| Q |
128 |
catcatacttcaccttaaccgccaatttgttaagcccaatcaaaacccacgccgcaacaaacccacacacaatcgcggcccatggttccacaacagaaca |
227 |
Q |
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| T |
35415454 |
catcatacttcaccttaatcgccaatttattaagcccaatcaaaacccacgcagcaacaaacccacacacaatcgcggcccatggttccacaacagaaca |
35415553 |
T |
|
| Q |
228 |
accggccgttatagcagcaaaaccgccaagtaaaccgttacacacgtcaatcacattccagtgtccaactaataaccgtttactaaacaaagttgttaaa |
327 |
Q |
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| T |
35415554 |
acccgcagttatagcagcaaaaccgccaagtaaaccgttacacacgtcagtcacattccagtgtccaactaataaccgtttactaaacaaagttgttaaa |
35415653 |
T |
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| Q |
328 |
gctgcagtgcatccagccaatgtcgttgtgacacctgttcttcctatagcactccattgaccataataattccttttgttactcatattt |
417 |
Q |
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| T |
35415654 |
gctgcagtgcatccagccaatgtcgttgtgacacctgttcttccaatagcactccattgaccataataattccttttgttactcatattt |
35415743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 259
Target Start/End: Original strand, 17090441 - 17090495
Alignment:
| Q |
205 |
gcccatggttccacaacagaacaaccggccgttatagcagcaaaaccgccaagta |
259 |
Q |
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| T |
17090441 |
gcccatggttctacaacggaacatccggcggttattgcagcaaaaccgccgagta |
17090495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 163 - 397
Target Start/End: Original strand, 46669427 - 46669661
Alignment:
| Q |
163 |
ccaatcaaaacccacgccgcaacaaacccacacacaatcgcggcccatggttccacaacagaacaaccggccgttatagcagcaaaaccgccaagtaaac |
262 |
Q |
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| T |
46669427 |
ccaatcaacacccaagcagcaacaaaaccacaaataatagcagcccatggatccacaacagaacaccctgcagttatagcagcaaaaccaccaagcaaac |
46669526 |
T |
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| Q |
263 |
cgttacacacgtcaatcacattccagtgtccaactaataaccgtttactaaacaaagttgttaaagctgcagtgcatccagccaatgtcgttgtgacacc |
362 |
Q |
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| T |
46669527 |
cattgcacacatcactaacactccaatgacctgtttgcatacgtttaccaaacaaagtagtgagagctgcagtacatccagccaatgtagttgtgacagc |
46669626 |
T |
|
| Q |
363 |
tgttcttcctatagcactccattgaccataataat |
397 |
Q |
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| T |
46669627 |
tgtcctcccaatagcactccattgaccatagtaat |
46669661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 163 - 398
Target Start/End: Original strand, 39641230 - 39641465
Alignment:
| Q |
163 |
ccaatcaaaacccacgccgcaacaaacccacacacaatcgcggcccatggttccacaacagaacaaccggccgttatagcagcaaaaccgccaagtaaac |
262 |
Q |
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| T |
39641230 |
ccaatcaaaacccaagcggcaatgaatccacaaataattgcagcccaaggatcaacaacagaacaacctgcagttatagcagcaaaaccacctaacaaac |
39641329 |
T |
|
| Q |
263 |
cgttacacacgtcaatcacattccagtgtccaactaataaccgtttactaaacaaagttgttaaagctgcagtgcatccagccaatgtcgttgtgacacc |
362 |
Q |
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| T |
39641330 |
cattacaaacatcagtaacattccaatgacctgtttgcaaacgtttcccaaacaaagtagtgagtgctgctgtgcatccagccaatgtagttgtcacagc |
39641429 |
T |
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| Q |
363 |
tgttcttcctatagcactccattgaccataataatt |
398 |
Q |
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| T |
39641430 |
tgttctcccaatagcactccattgaccatagtaatt |
39641465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 139
Target Start/End: Original strand, 25544184 - 25544265
Alignment:
| Q |
58 |
gcaaacaatcctgtaaacaacaccccccatgcgccacaccctccatgtaactgcgccgcctctaaaggatcatcatacttca |
139 |
Q |
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|||||||||||||||||||||| ||||| |||||||| ||||| || || || |||||||| ||||||||||| |||| |
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| T |
25544184 |
gcaaacaatcctgtaaacaacaagccccaaagaccacacccaccatgcaattgtgctgcctctaatggatcatcatagttca |
25544265 |
T |
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