View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21367_low_7 (Length: 427)
Name: NF21367_low_7
Description: NF21367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21367_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 11 - 364
Target Start/End: Original strand, 46428669 - 46429020
Alignment:
| Q |
11 |
aatgagaatggcgattgtgttactactccctatgtgtttgattgtgacaccatgcgtattgttaaggcaagttcttctggaaatcttaactaagtttatg |
110 |
Q |
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| T |
46428669 |
aatgagaatggcgattgtgttactactccctatgtgtttgattgtgacaccatgcgtattgttaaggcaagttcttctggaaatcttaactaagttt--g |
46428766 |
T |
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| Q |
111 |
tggccttaagcattgctttttaaataaatttcaatttaaattccttcaatttggtttctttgtgcacatttgaattccttaaatatcaatttctaaacca |
210 |
Q |
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| T |
46428767 |
tggccttaagcattgctttttaaataaatttcaatttgaattccttcaatttggtttctttgtgcacatttgaattccttaaatatcaatttctaaacca |
46428866 |
T |
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| Q |
211 |
acaggagggctatctcaatgaagaaccctcgtgcgagaatgctttactggagaagaaagagttggaggctgatggtgatgtggctacacgagttgatgaa |
310 |
Q |
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| T |
46428867 |
acaggagggctatctcaatgaagaaccctcgtgcgagaatgctttactggagaagaaagagttggaggctgatggtgatgtggctacacgagttgatgaa |
46428966 |
T |
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| Q |
311 |
ataagtgggtagataggttaagtattgtcaatctgttacctaactcaaatttgc |
364 |
Q |
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| T |
46428967 |
ataagtgggtagataggttaagtattgtcaatctgttacctaactcaaatttgc |
46429020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 72 - 137
Target Start/End: Original strand, 46021819 - 46021884
Alignment:
| Q |
72 |
ttaaggcaagttcttctggaaatcttaactaagtttatgtggccttaagcattgctttttaaataa |
137 |
Q |
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| T |
46021819 |
ttaaggcaagttcttctggaaatcttaactatgtttatgaggcctttagcattgctttttaaataa |
46021884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 320 - 408
Target Start/End: Original strand, 46441556 - 46441647
Alignment:
| Q |
320 |
tagataggttaagtattgtcaatctgtta-cctaactcaaatttgcggtaagaa--tttgctttaaaattggtaatctaattagaggctgag |
408 |
Q |
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| T |
46441556 |
tagataggttaagtattgtcaatcagtcaacctaactcaattttgcggtaagaaaatttgctttaaaattggtaatctaattggaggttgag |
46441647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 72 - 137
Target Start/End: Complemental strand, 46245773 - 46245708
Alignment:
| Q |
72 |
ttaaggcaagttcttctggaaatcttaactaagtttatgtggccttaagcattgctttttaaataa |
137 |
Q |
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| T |
46245773 |
ttaaggcaagttcttctggaaatcttaactatgtttatgaggcctttagcattgcttttgaaataa |
46245708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 73 - 130
Target Start/End: Complemental strand, 46303583 - 46303526
Alignment:
| Q |
73 |
taaggcaagttcttctggaaatcttaactaagtttatgtggccttaagcattgctttt |
130 |
Q |
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| T |
46303583 |
taagggaagttcttctggaaatctcaactaagttaatgtggcctttatcattgctttt |
46303526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 316
Target Start/End: Complemental strand, 46303032 - 46302953
Alignment:
| Q |
243 |
gcgagaatgctttactggagaagaaagagttggaggc------tgatggtgatgtggctacacgagttgatgaaataagt |
316 |
Q |
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| T |
46303032 |
gcgataatgctttacaggagaaggaagagttggaggctgatattgatagtgatgtggctaaatgagttgatgaaataagt |
46302953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 46022006 - 46022044
Alignment:
| Q |
245 |
gagaatgctttactggagaagaaagagttggaggctgat |
283 |
Q |
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| T |
46022006 |
gagaatgctttaccggagaaggaagagttggaggctgat |
46022044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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