View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21368_high_1 (Length: 784)

Name: NF21368_high_1
Description: NF21368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21368_high_1
NF21368_high_1
[»] chr4 (6 HSPs)
chr4 (362-766)||(16163127-16163536)
chr4 (1-368)||(16163572-16163939)
chr4 (437-683)||(16167289-16167534)
chr4 (233-368)||(10276860-10276996)
chr4 (282-368)||(16167647-16167736)
chr4 (362-403)||(16167570-16167611)
[»] chr8 (2 HSPs)
chr8 (233-368)||(10251051-10251184)
chr8 (235-370)||(12658905-12659039)
[»] scaffold0069 (3 HSPs)
scaffold0069 (240-368)||(11516-11643)
scaffold0069 (362-406)||(11704-11748)
scaffold0069 (437-475)||(14695-14733)
[»] scaffold0002 (1 HSPs)
scaffold0002 (238-364)||(356227-356352)
[»] chr7 (3 HSPs)
chr7 (233-365)||(24883385-24883516)
chr7 (365-409)||(11676275-11676319)
chr7 (365-400)||(24883585-24883620)
[»] scaffold0006 (3 HSPs)
scaffold0006 (236-368)||(89972-90106)
scaffold0006 (362-409)||(90168-90215)
scaffold0006 (437-475)||(90244-90282)
[»] chr2 (4 HSPs)
chr2 (233-368)||(23827648-23827784)
chr2 (233-353)||(11387753-11387873)
chr2 (364-409)||(11387930-11387975)
chr2 (437-490)||(11388006-11388058)
[»] chr1 (3 HSPs)
chr1 (233-329)||(24055567-24055662)
chr1 (299-368)||(24276262-24276332)
chr1 (362-409)||(16111375-16111422)
[»] chr3 (1 HSPs)
chr3 (233-356)||(1461569-1461690)
[»] scaffold0120 (1 HSPs)
scaffold0120 (299-368)||(1982-2052)
[»] chr6 (1 HSPs)
chr6 (299-353)||(11165928-11165982)


Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 362 - 766
Target Start/End: Complemental strand, 16163536 - 16163127
Alignment:
Q  362 tatttttaatagtttatctttctattagtttcgttcaaacagtttgttnnnnnnnntatagtctcgcnnnnnnnn-aaagaaatgaataattttaatcaa 460  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||| |         ||||||||||||||||||||| ||    
T  16163536 tatttttaatagtttatctttctattagtttcgttcaaacagtttgttaaaaaaaatatagtctcactttttttttaaagaaatgaataattttaattaa 16163437  T
Q  461 tgtcttggattaaaaatctggggctttacagtatctgttttgaatgttgattgatgaaagaaaaacataactatcttataaacaatacatcaaaattatt 560  Q
    |||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||| |    
T  16163436 tgtcttggattaaatatccggggcgttacagtatctgttttgaatgttgattgatgaaagaaaagcataactctcttataaataatacatcaaaattagt 16163337  T
Q  561 gttgtttaggtgtccacaatatgctggtttttgggccctcaagtcaacaataacaaggactatatacatggacgattcaagttcatttatgcattgcttg 660  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16163336 gttgttcaggtgtccacaatatgctggtttttgggcccccaagtcaacaataacaaggactatatacatggacgattcaagttcatttatgcattgcttg 16163237  T
Q  661 cgactgtgcaaatcaagttctaagaaat----gatatgcaggttattcctatctttatactacataaaggactgtgacaaaagcaaaaatatgcacatag 756  Q
    | ||||||||||||||||||||||||||    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  16163236 caactgtgcaaatcaagttctaagaaataagggatatgcaggttattcctagctttatactacataaaggactgtgacaaaagcaaaaatatggacatag 16163137  T
Q  757 atgggaaagt 766  Q
    ||||||||||    
T  16163136 atgggaaagt 16163127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 16163939 - 16163572
Alignment:
Q  1 gatgagcatctaatatggttaaatgacaatagtgccctcaatttttaaagtatttatcttctttaccacacattcatgtttttgattaaagttgatnnnn 100  Q
    |||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||        
T  16163939 gatgagcatctaatatggttaaatgacaatagcgtcctcattttttaaagtatttatcttctttaccacacattcatatttttgattaaagttgataaaa 16163840  T
Q  101 nnnntaaatttgcatctcacctaatattttactggatgttctaaacttgtttgctattatagtatcaaaatttggaggnnnnnnnn--cttctttcgttt 198  Q
        ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||          ||| |||| |||    
T  16163839 at--taaatttgcatctcacctaatatattactggatgttctaaacttgtttgctattatagtatcaaaatttggaggttttttttttcttttttcattt 16163742  T
Q  199 gtatgtattttattaatctatgtttctccttaattataatgttgtaggtaccaaagtttgacatacgaagcttgatgtgtgatgaatcgcgtacggggat 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  16163741 gtatgtattttattaatctatgtttctccttaattataatgttgtaggtatcaaagtttgatatatgaagcttgatgtgtgatgaatcgcgtacggggat 16163642  T
Q  299 aaattgagtttttcaatgaaaaagaagactagtattcattaatttgtatttgtaattttaaaatattttt 368  Q
    |||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  16163641 aaattggggttttcaatgaaaaagaagactagttttcattaatttgtatttgtaattttaaaatattttt 16163572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 437 - 683
Target Start/End: Complemental strand, 16167534 - 16167289
Alignment:
Q  437 aaagaaatgaataattttaatcaatgtcttggattaaaaatctggggctttacagtatctgttttgaatgttgattgatgaaagaaaaacataactatct 536  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||| || ||||||||||||||||||||||||||| |||||||| ||||||| |||    
T  16167534 aaagaaatgaataattttaatcaatgtcttggattaaaaatccagggcgtt-cagtatctgttttgaatgttgattgataaaagaaaagcataactctct 16167436  T
Q  537 tataaacaatacatcaaaattattgttgtttaggtgtccacaatatgctggtttttgggccctcaagtcaacaataacaaggactatatacatggacgat 636  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  16167435 tataaacaatacatcaaaattagtgttgttcaggtgtccacaatatactggtttttaggccctcaagtcaacaataacaaggactatatacatggacgat 16167336  T
Q  637 tcaagttcatttatgcattgcttgcgactgtgcaaatcaagttctaa 683  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||    
T  16167335 tcaagttcatttatgcattgcttgcgactctgcaaatcaagttctaa 16167289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 233 - 368
Target Start/End: Original strand, 10276860 - 10276996
Alignment:
Q  233 tataatgttgtaggtaccaaagtttgacatacgaagcttgatgtgtgatgaatcgcgtacggggataaattgagtttttcaatgaaaaagaagactag-t 331  Q
    |||||||||||||||||||||| | || ||| |||| ||||| ||||||||| ||| |||||||  |||||||||||||||||||||||||||||| | |    
T  10276860 tataatgttgtaggtaccaaagat-gaaatatgaagtttgatttgtgatgaaacgcttacgggggcaaattgagtttttcaatgaaaaagaagacttgtt 10276958  T
Q  332 attcattaatttgtatttgtaa-ttttaaaatattttt 368  Q
     |||||||||||||| | |||| |||||||||| ||||    
T  10276959 tttcattaatttgtaatagtaacttttaaaatagtttt 10276996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 282 - 368
Target Start/End: Complemental strand, 16167736 - 16167647
Alignment:
Q  282 gaatcgcgtacggggataaattgagtttttcaatgaaaaagaagactagtattcattaattt-----gtatttgtaattttaaaatattttt 368  Q
    |||||||||| |||||||||||| ||||  |||||||||||||||||||| |||||||||||     |||||||||||||||||||||||||    
T  16167736 gaatcgcgtaaggggataaattgggttt--caatgaaaaagaagactagttttcattaatttaatttgtatttgtaattttaaaatattttt 16167647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 362 - 403
Target Start/End: Complemental strand, 16167611 - 16167570
Alignment:
Q  362 tatttttaatagtttatctttctattagtttcgttcaaacag 403  Q
    ||||||||| |||||||||||||||||||||| || ||||||    
T  16167611 tatttttaacagtttatctttctattagtttcatttaaacag 16167570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 233 - 368
Target Start/End: Original strand, 10251051 - 10251184
Alignment:
Q  233 tataatgttgtaggtaccaaagtttgacatacgaagcttgatgtgtgatgaatcgcgtacggggataaattgagtttttcaatgaaaaagaagactagta 332  Q
    |||||| |||||||||||||||||||| ||| ||||||||||||| | ||||||||||||||| | ||||||  |||||||||||||||||||||||||     
T  10251051 tataatattgtaggtaccaaagtttgatatatgaagcttgatgtgcggtgaatcgcgtacgggaacaaattggatttttcaatgaaaaagaagactagtc 10251150  T
Q  333 ttcattaatttgtatttgtaattttaaaatattttt 368  Q
    || ||| | ||||| |||||||||  ||||||||||    
T  10251151 tttatttagttgtaattgtaattt--aaatattttt 10251184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 235 - 370
Target Start/End: Complemental strand, 12659039 - 12658905
Alignment:
Q  235 taatgttgtaggtaccaaagtttgacatacgaagcttgatgtgtgatgaatcgcgtacggggataaattgagtttttcaatgaaaaagaagactagtatt 334  Q
    |||| |||||| |||||||| | || ||| |||||||||||||||||||| ||| ||||| || |||||| | ||||||||||||| ||||||| || ||    
T  12659039 taatattgtagctaccaaagat-gaaatatgaagcttgatgtgtgatgaaacgcttacggaga-aaattggggttttcaatgaaaaggaagactggtttt 12658942  T
Q  335 cattaatttgtatttgtaa-ttttaaaatatttttaa 370  Q
    ||||||||| || | |||| ||||| |||||||||||    
T  12658941 cattaatttctaatcgtaacttttataatatttttaa 12658905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 54; Significance: 1e-21; HSPs: 3)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 240 - 368
Target Start/End: Original strand, 11516 - 11643
Alignment:
Q  240 ttgtaggtaccaaagtttgacatacgaagcttgatgtgtgatgaatcgcgtacggggataaattgagtttttcaatgaaaaagaagactagtattcatta 339  Q
    ||||||||||||||| | || ||| |||||||||||||||||||| |||||||||||  |||||| ||||||||||||||| |||||||||| ||| |||    
T  11516 ttgtaggtaccaaagat-gaaatatgaagcttgatgtgtgatgaaacgcgtacgggg-caaattgggtttttcaatgaaaatgaagactagttttcttta 11613  T
Q  340 atttgtatttgtaa-ttttaaaatattttt 368  Q
    |  |||| |||||| || ||||||||||||    
T  11614 aaatgtaattgtaacttgtaaaatattttt 11643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 362 - 406
Target Start/End: Original strand, 11704 - 11748
Alignment:
Q  362 tatttttaatagtttatctttctattagtttcgttcaaacagttt 406  Q
    ||||||||||||||| |||||||||||||||||||||||||||||    
T  11704 tatttttaatagtttgtctttctattagtttcgttcaaacagttt 11748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 437 - 475
Target Start/End: Original strand, 14695 - 14733
Alignment:
Q  437 aaagaaatgaataattttaatcaatgtcttggattaaaa 475  Q
    ||||||||||||||||||||| |||||||||||| ||||    
T  14695 aaagaaatgaataattttaataaatgtcttggatgaaaa 14733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 238 - 364
Target Start/End: Complemental strand, 356352 - 356227
Alignment:
Q  238 tgttgtaggtaccaaagtttgacatacgaagcttgatgtgtgatgaatcgcgtacggggataaattgagtttttcaatgaaaaagaagactagtattcat 337  Q
    ||||||||||||||||| | ||  || |||||||||||||||||||| ||| |||||||  |||||| ||||||||||||||||||| | |||| || ||    
T  356352 tgttgtaggtaccaaagat-gaattatgaagcttgatgtgtgatgaaacgcttacggggtcaaattgggtttttcaatgaaaaagaaaattagtctt-at 356255  T
Q  338 taatttgtatttgtaa-ttttaaaatat 364  Q
    ||||||||| |||||| |||||||||||    
T  356254 taatttgtaattgtaacttttaaaatat 356227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 233 - 365
Target Start/End: Original strand, 24883385 - 24883516
Alignment:
Q  233 tataatgttgtaggtaccaaagtttgacatacgaagcttgatgtgtgatgaatcgcgtacggggataaattgagtttttcaatgaaaaagaagactagta 332  Q
    ||||||||||||||||| |||| | || ||| |||||||||||| ||||||| ||| ||||| || |||||| ||||||||||||||||| ||| ||||     
T  24883385 tataatgttgtaggtactaaagat-gaaatatgaagcttgatgtatgatgaaacgcttacggaga-aaattgggtttttcaatgaaaaaggagattagtt 24883482  T
Q  333 ttcattaatttgtatttgtaa-ttttaaaatatt 365  Q
    || |||| |||||| |||||| ||||||||||||    
T  24883483 tttattattttgtaattgtaatttttaaaatatt 24883516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 365 - 409
Target Start/End: Complemental strand, 11676319 - 11676275
Alignment:
Q  365 ttttaatagtttatctttctattagtttcgttcaaacagtttgtt 409  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||    
T  11676319 ttttaatagtttatctttctattagttttgttcaaatagtttgtt 11676275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 365 - 400
Target Start/End: Original strand, 24883585 - 24883620
Alignment:
Q  365 ttttaatagtttatctttctattagtttcgttcaaa 400  Q
    ||||||||||||||||||| ||||||||||||||||    
T  24883585 ttttaatagtttatctttccattagtttcgttcaaa 24883620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 236 - 368
Target Start/End: Original strand, 89972 - 90106
Alignment:
Q  236 aatgttgtaggtaccaaagtttgacatacgaagcttgatgtgtgatgaatcgcgtacggggataaattgagtttttcaatgaaaaagaagac--tagtat 333  Q
    ||||||||||||||||||| | || ||| |||||||||||||||||||| ||||||| |||  | |||| ||||||||||||||| ||||||  |||| |    
T  89972 aatgttgtaggtaccaaagat-gaaatatgaagcttgatgtgtgatgaaacgcgtacaggggcagattgggtttttcaatgaaaatgaagactatagttt 90070  T
Q  334 tcattaatttgtatttgtaa-ttttaaaatattttt 368  Q
    || ||||  |||| |||||| |||||||||||||||    
T  90071 tctttaaaatgtaattgtaacttttaaaatattttt 90106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 362 - 409
Target Start/End: Original strand, 90168 - 90215
Alignment:
Q  362 tatttttaatagtttatctttctattagtttcgttcaaacagtttgtt 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  90168 tatttttaatagtttatctttctattagtttcgttcaaacagtttgtt 90215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 437 - 475
Target Start/End: Original strand, 90244 - 90282
Alignment:
Q  437 aaagaaatgaataattttaatcaatgtcttggattaaaa 475  Q
    ||||||||||||||||||||| |||||||||||| ||||    
T  90244 aaagaaatgaataattttaattaatgtcttggatgaaaa 90282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 8e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 233 - 368
Target Start/End: Complemental strand, 23827784 - 23827648
Alignment:
Q  233 tataatgttgtaggtaccaaagtttgacatacgaagcttgatgtgtgatgaatcgcgtacggggataaattgagtttttcaatgaaaaagaagactag-t 331  Q
    ||||||||||||||||||||||   || ||| |||| ||||||||||||||| ||| ||| |||  |||||| ||||||||||||||||||||||| | |    
T  23827784 tataatgttgtaggtaccaaagag-gaaatatgaagtttgatgtgtgatgaaacgcttacaggggcaaattgggtttttcaatgaaaaagaagacttgtt 23827686  T
Q  332 attcattaatttgtatttgtaa-ttttaaaatattttt 368  Q
     |||||||||| ||| | |||| |||||||||| ||||    
T  23827685 tttcattaattagtaatagtaacttttaaaatagtttt 23827648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 233 - 353
Target Start/End: Original strand, 11387753 - 11387873
Alignment:
Q  233 tataatgttgtaggtaccaaagtttgacatacgaagcttgatgtgtgatgaatcgcgtac-ggggataaattgagtttttcaatgaaaaagaagactagt 331  Q
    |||||||||||||||| ||||| | || ||| ||||||| |||||||||||| ||| ||| ||||  |||||||| ||||||||||||||||| | | ||    
T  11387753 tataatgttgtaggtatcaaagat-gaaatatgaagctttatgtgtgatgaaacgcttactgggggaaaattgaggttttcaatgaaaaagaataatggt 11387851  T
Q  332 attcattaatttgtatttgtaa 353  Q
     ||| |||||||||| ||||||    
T  11387852 cttcgttaatttgtaattgtaa 11387873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 364 - 409
Target Start/End: Original strand, 11387930 - 11387975
Alignment:
Q  364 tttttaatagtttatctttctattagtttcgttcaaacagtttgtt 409  Q
    ||||||||| ||||||||||||||||||| ||||||||| ||||||    
T  11387930 tttttaatattttatctttctattagttttgttcaaacaatttgtt 11387975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 437 - 490
Target Start/End: Original strand, 11388006 - 11388058
Alignment:
Q  437 aaagaaatgaataattttaatcaatgtcttggattaaaaatctggggctttaca 490  Q
    ||||||||||||||||||||| ||||||||||| | |||||||||||| |||||    
T  11388006 aaagaaatgaataattttaattaatgtcttgga-tgaaaatctggggcattaca 11388058  T

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Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 233 - 329
Target Start/End: Complemental strand, 24055662 - 24055567
Alignment:
Q  233 tataatgttgtaggtaccaaagtttgacatacgaagcttgatgtgtgatgaatcgcgtacggggataaattgagtttttcaatgaaaaagaagacta 329  Q
    |||||||||||||||||||||| | || ||| |||||||||||| |||||||  || |||||||  |||||  ||||||||||||||||||||||||    
T  24055662 tataatgttgtaggtaccaaagat-gaaatatgaagcttgatgtatgatgaaatgcttacggggcaaaatttggtttttcaatgaaaaagaagacta 24055567  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 299 - 368
Target Start/End: Original strand, 24276262 - 24276332
Alignment:
Q  299 aaattgagtttttcaatgaaaaagaagactagtattcattaatttgtatttgtaa-ttttaaaatattttt 368  Q
    |||||| ||||||||||| ||||||||| || | |||||||| |||||||||||| |||||||||| ||||    
T  24276262 aaattgggtttttcaatgtaaaagaagattaattttcattaagttgtatttgtaacttttaaaatactttt 24276332  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 362 - 409
Target Start/End: Original strand, 16111375 - 16111422
Alignment:
Q  362 tatttttaatagtttatctttctattagtttcgttcaaacagtttgtt 409  Q
    ||||||| | |||| |||||||||||||||||||||||||| ||||||    
T  16111375 tattttttaaagttcatctttctattagtttcgttcaaacattttgtt 16111422  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 233 - 356
Target Start/End: Original strand, 1461569 - 1461690
Alignment:
Q  233 tataatgttgtaggtaccaaagtttgacatacgaagcttgatgtgtgatgaatcgcgtacggggataaattgagtttttcaatgaaaaagaagactagta 332  Q
    ||||||| |||| ||||||||| | || ||| |||| |||||||||||| || ||| |||||||| | ||||| |||||||||||||||||||||||||     
T  1461569 tataatgatgtaagtaccaaagat-gaaatatgaaggttgatgtgtgataaaacgcttacgggga-acattgaatttttcaatgaaaaagaagactagtt 1461666  T
Q  333 ttcattaatttgtatttgtaattt 356  Q
    || ||| | ||||| || ||||||    
T  1461667 tttatttagttgtaattttaattt 1461690  T

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Target: scaffold0120 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 299 - 368
Target Start/End: Complemental strand, 2052 - 1982
Alignment:
Q  299 aaattgagtttttcaatgaaaaagaagactagtattcattaatttgtatttgtaa-ttttaaaatattttt 368  Q
    |||||| ||||||||||| ||||||||| || | |||||||| | |||||||||| |||||||||| ||||    
T  2052 aaattgggtttttcaatgtaaaagaagattaattttcattaagtcgtatttgtaacttttaaaatactttt 1982  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 299 - 353
Target Start/End: Complemental strand, 11165982 - 11165928
Alignment:
Q  299 aaattgagtttttcaatgaaaaagaagactagtattcattaatttgtatttgtaa 353  Q
    |||||| ||||||||||| ||||||||| || | |||||||| ||||||||||||    
T  11165982 aaattgcgtttttcaatgtaaaagaagattaattttcattaagttgtatttgtaa 11165928  T

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