View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21368_high_3 (Length: 383)
Name: NF21368_high_3
Description: NF21368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21368_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 10 - 364
Target Start/End: Complemental strand, 52135345 - 52134991
Alignment:
| Q |
10 |
ataattctgcaaagtatgaggctaagcatttttcgctttatgcttctgtgcttggtgttcctgaacttgatttagggaatcaccgtttggatattacacg |
109 |
Q |
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| T |
52135345 |
ataattctgcaaagtatgaggctaagcatttttcgctttatgcttctgtgcttggtgttcctgaacttgatttagggaatcaccgtttggatattacacg |
52135246 |
T |
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| Q |
110 |
gttgcttccgctttcgttggatgatcttgaagaggagaagaattcggggaaatggagtacgagttttagattatcaggaaaggctaaaggggctgtaatg |
209 |
Q |
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| T |
52135245 |
gttgcttccgctttcgttggatgatcttgaagaggagaagaattcggggaaatggagtacgatttttagattatcaggaaaggctaaaggggctgtaatg |
52135146 |
T |
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| Q |
210 |
aatgtgagttttgggtatatggtggtcggtgataacaatacttttgcgcctaatgtgttgacttcaaggcaaaattgtttggcattgagtgaaatggatg |
309 |
Q |
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| T |
52135145 |
aatgtgagttttgggtatatggtggttggtgataacaatacttttgcgcctaatgtgttgacttcaaggcaaaattgtttggcattgagtgaaacggatg |
52135046 |
T |
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| Q |
310 |
taaatccgtgtcagtattcatctcgggttatagatgaggtgaaggatcttcatga |
364 |
Q |
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| T |
52135045 |
taaatccgtgtcagtattcatctcgggttatagatgaggtgaaggatcttcatga |
52134991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 246
Target Start/End: Original strand, 17950687 - 17950920
Alignment:
| Q |
13 |
attctgcaaagtatgaggctaagcatttttcgctttatgcttctgtgcttggtgttcctgaacttgatttagggaatcaccgtttggatattacacggtt |
112 |
Q |
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| T |
17950687 |
attctgcaaaatatgaagctaagcactttttgctttacgcttcgcttctcagtgcgccggagcttgatttggggaaacatcgagttgatcttacgaggtt |
17950786 |
T |
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| Q |
113 |
gcttccgctttcgttggatgatcttgaagaggagaagaattcggggaaatggagtacgagttttagattatcaggaaaggctaaaggggctgtaatgaat |
212 |
Q |
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|||||| || | ||||| || ||||| |||||||||| |||||||| |||| ||||||||| || ||||| |||||||| || || || || |||||| |
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| T |
17950787 |
gcttcctctcactttggaggagcttgaggaggagaagagctcggggaagtggactacgagtttcaggttatcgggaaaggccaagggtgccgtgatgaat |
17950886 |
T |
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| Q |
213 |
gtgagttttgggtatatggtggtcggtgataaca |
246 |
Q |
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| T |
17950887 |
gtcagttttgggtatacggttgttggtgataaca |
17950920 |
T |
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