View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21368_low_2 (Length: 613)
Name: NF21368_low_2
Description: NF21368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21368_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 569; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 1 - 597
Target Start/End: Complemental strand, 40208565 - 40207969
Alignment:
| Q |
1 |
cattgccggtggactcaacaacgaaagctttcaaccttttcattgctagtttcaaagtctcttctgacatgtttgcgaaacacacacgaaaccaacctgg |
100 |
Q |
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| T |
40208565 |
cattgccagtggactcaacaacgaaagctttcaaccttttcattgctagtttcaaagtctcttctgacatgtttgcgaaacacacacgaaaccaacctgg |
40208466 |
T |
|
| Q |
101 |
ttctgtacaatgacaagatgaaccaggtgaaatgtttaaaccaacttggtacactattttcttccatagttccatttcagcttcaaatgtgttggattgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
40208465 |
ttctgtacaatgacaagatgaaccaggtgaaatgtttaaaccaacttggtacactattttcttccatagttccatttcagcttcaaatgtgttggaatgg |
40208366 |
T |
|
| Q |
201 |
agaagatgcctcatatcaacccaacaaaataatcctgcattgctttccaagcagcttattccggctttttgtaaccccgaaacaagcttgttctgacgtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40208365 |
agaagatgcctcatatcaacccaacaaaataatcctgcattgctttccaagcagcttattccggctttttgtaaccccgaaacaagcttgttctgacgtt |
40208266 |
T |
|
| Q |
301 |
tcttaagtctctttaagttttcagctaggtagtttttggtgaattttttgtcaccaagcatggcggaaagaaggtattgtgtttgcgacgagattaagcc |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40208265 |
tcttaagtctctttaagttttcagctaggtagtttttggtgaattttttgtcaccaagcatggcggaaagaaggtattgtgtttgcgacgagattaagcc |
40208166 |
T |
|
| Q |
401 |
gaagcttgacatcttcgtggcagcagcaacaactgtatcattttcggagtagatggcaccaacgcggaaacctggcaaacccaagtctttggaaagacta |
500 |
Q |
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| T |
40208165 |
gaagcttgacatcttcgtggcagcagcaacaaccgtatcattttcagagtagatggcgccaacgcggaaacctggcaaacccaagtctttggaaagacta |
40208066 |
T |
|
| Q |
501 |
tagacaacatgaactctctcaaaaatattatcagcgtctttgaagtcgttaaagtcatttctgtctttaagaatttccatgacgctgatgaaatttg |
597 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40208065 |
tagacaacatgaactctctcaaaaatattatcagcgtctttggagttgttaaagtcatttctgtctttaagaatttccatgacgctgatgaaatttg |
40207969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 5e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 33 - 517
Target Start/End: Original strand, 5134013 - 5134500
Alignment:
| Q |
33 |
aaccttttcattgctagtttcaaagtctcttctgacatgtttgcgaaacacacacgaaaccaacctggttctgtacaatgacaagatgaaccaggtgaaa |
132 |
Q |
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||||||||||| |||| || || || |||||||||||||| || ||||| ||||||||||| || ||||| || |||||||| || | ||||||||||| |
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| T |
5134013 |
aaccttttcatagctaagtttaatgtatcttctgacatgttagcaaaacaaacacgaaaccacccaggttcggtgcaatgacatgaagcaccaggtgaaa |
5134112 |
T |
|
| Q |
133 |
tgtttaaaccaacttggtacactattttcttccatagttccatttcagcttcaaatgtgttggattggagaagatgcctcatatcaacccaacaaaataa |
232 |
Q |
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|||| || | ||| | | | | ||| ||||||||||| |||||||||||||||||||| || || | ||||| || |||||||||||||| ||||| || |
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| T |
5134113 |
tgttcaaccgaacatcgaataatatcttcttccatagctccatttcagcttcaaatgtatttgaattaagaaggtgtctcatatcaacccagcaaaacaa |
5134212 |
T |
|
| Q |
233 |
tcctgc---attgctttccaagcagcttattccggctttttgtaaccccgaaacaagcttgttctgacgtttcttaagtctctttaagttttcagctagg |
329 |
Q |
| |
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|| || ||| |||| | || || || || ||||||||||| || ||||||| | || || | ||| ||||| |||||| || ||| | | |
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| T |
5134213 |
accagcattatttgtttcgagacaactaatacctgctttttgtaatccattaacaagcattttttgtctttttttaagcctcttttgattctcaaaaatg |
5134312 |
T |
|
| Q |
330 |
tagtttttggtgaattttttgtcaccaagcatggcggaaagaaggtattgtgtttgcgacgagattaagccgaagcttgacatcttcgtggcagcagcaa |
429 |
Q |
| |
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|||||||| ||||||||||||||||| ||||| | || || || ||||| ||||| || || | || || ||||| ||||| ||||| ||||| |||| |
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| T |
5134313 |
tagttttttgtgaattttttgtcacctagcatagatgagaggagatattgagtttgtgatgaaaccaaaccaaagctcgacattttcgttgcagcggcaa |
5134412 |
T |
|
| Q |
430 |
caactgtatcattttcggagtagatggcaccaacgcggaaacctggcaaacccaagtctttggaaagactatagacaacatgaactct |
517 |
Q |
| |
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| || | || ||||| || ||||| ||||| || |||||||| |||||||||||||||||||| |||||||| || ||||||||||| |
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| T |
5134413 |
cgaccatgtcgttttcagaatagatagcacctacacggaaaccgggcaaacccaagtctttggagagactataaacgacatgaactct |
5134500 |
T |
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