View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21368_low_4 (Length: 370)
Name: NF21368_low_4
Description: NF21368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21368_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 4 - 344
Target Start/End: Complemental strand, 49921768 - 49921428
Alignment:
| Q |
4 |
ggatcaggggcatatgcatcttgtttgttactccgactccacgttggccattcaactggttaacacaacggtgaatccttggcacctttttgcacccatt |
103 |
Q |
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| T |
49921768 |
ggatcaggggcataggcatcttgtttgttactccgactccacgttggccattcaactggttaacacaatggtgaatccttgacacctttttgcacccatt |
49921669 |
T |
|
| Q |
104 |
atcagcaatataaaggacctgatgactcacgattggcatttacaactgagtcatacgtggcgggaggcgaatgccacgactgatttcatggcgaagatgg |
203 |
Q |
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| T |
49921668 |
atcagcaatataaaggacctgatggctcgcgattggcatttacaactgagtcatacgtggcgggaggcgaatgccacagctgatttcatggcgaagatgg |
49921569 |
T |
|
| Q |
204 |
gcgcgaactataacgaagcttggcaggagtttgtagaaccacctgatggtatcttgcctcttctgcatgatgatgcacttcgagttcagttcgttcgaca |
303 |
Q |
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| T |
49921568 |
gcgcgaactgtaacgaagcttggcaggagtttgtagaaccacctgatggtatcttgcctctgctgcaggatgatgcacttcgagttcagttcgctcggca |
49921469 |
T |
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| Q |
304 |
atagatgctgtttagctaccctgtagctgttttttcttctg |
344 |
Q |
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| T |
49921468 |
atagaagctgtttagctaccctgtagctgttttttcttctg |
49921428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 13799686 - 13799889
Alignment:
| Q |
1 |
gtgggatcaggggcatatgcatcttgtttgttactccgactccacgttggccattcaactggttaacacaacggtgaatccttggcacctttttgcaccc |
100 |
Q |
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||||||| || || ||| ||||||| |||||| ||| ||||| || |||||| ||||| ||||||||| ||||||| |||||||||| |||||||| |
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| T |
13799686 |
gtgggattagaggtataggcatcttatttgtttctcagactcaactttggcctttcaattggttaacatggaggtgaattcttggcacctctttgcacct |
13799785 |
T |
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| Q |
101 |
attatcagcaatataaaggacctgatgactcacgattggcatttacaactgagtcatacgtggcgggaggcgaatgccacgactgatttcatggcgaaga |
200 |
Q |
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||||||||||||| ||||| || ||| ||| ||| ||| |||| |||||||||||||||||| ||||||| ||||| || |||||||||||| ||||| |
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| T |
13799786 |
gttatcagcaatatcaaggatctaatggctcgcgactggaatttccaactgagtcatacgtggtgggaggcaaatgctacagctgatttcatggtgaaga |
13799885 |
T |
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| Q |
201 |
tggg |
204 |
Q |
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|||| |
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| T |
13799886 |
tggg |
13799889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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