View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21368_low_5 (Length: 290)

Name: NF21368_low_5
Description: NF21368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21368_low_5
NF21368_low_5
[»] chr7 (4 HSPs)
chr7 (13-273)||(42176306-42176566)
chr7 (46-120)||(22388018-22388092)
chr7 (192-271)||(44615030-44615109)
chr7 (215-271)||(25511715-25511771)
[»] chr1 (1 HSPs)
chr1 (178-270)||(15579533-15579625)
[»] chr8 (3 HSPs)
chr8 (138-230)||(30918122-30918215)
chr8 (192-255)||(30191083-30191146)
chr8 (44-84)||(26499593-26499633)
[»] chr5 (5 HSPs)
chr5 (46-120)||(26516180-26516254)
chr5 (122-231)||(29659344-29659453)
chr5 (45-120)||(20982249-20982324)
chr5 (47-106)||(31723696-31723755)
chr5 (200-244)||(4619780-4619824)
[»] chr2 (3 HSPs)
chr2 (47-112)||(29318755-29318820)
chr2 (56-120)||(33192085-33192149)
chr2 (47-119)||(42826269-42826341)
[»] chr6 (3 HSPs)
chr6 (52-120)||(4003714-4003782)
chr6 (166-245)||(2460103-2460182)
chr6 (43-84)||(3155055-3155096)
[»] chr4 (3 HSPs)
chr4 (125-230)||(2996569-2996676)
chr4 (166-245)||(27123304-27123383)
chr4 (165-270)||(33534096-33534201)
[»] chr3 (3 HSPs)
chr3 (125-254)||(36646325-36646456)
chr3 (166-230)||(37273173-37273237)
chr3 (52-112)||(48271968-48272028)


Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 13 - 273
Target Start/End: Original strand, 42176306 - 42176566
Alignment:
Q  13 aatataaaatccaggttttacaaatgtggttatgtttgtataaacaacttatttaagcgcttaaaacataagttcttatcctttaagtgcttatatataa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42176306 aatataaaatccaggttttacaaatgtggttatgtttgtataaacaacttatttaagcgcttaaaacataagttcttatcctttaagtgcttatatataa 42176405  T
Q  113 actatttcgtacaagttataaattgttttcataagttgtcttagagagtatcaaaataagaagaaaacaacttaacgaaatgtcacaagttgttatcata 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  42176406 actatttcgtacaagttataaattgttttcataagttgtcttagagagtatcaaaataagaagaaaacaacttaacgaaatatcacaagttgttatcata 42176505  T
Q  213 agctctccgaaacagtcttgcaagttcttatgccaagagataaggtcaattaagtcaatac 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42176506 agctctccgaaacagtcttgcaagttcttatgccaagagataaggtcaattaagtcaatac 42176566  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 120
Target Start/End: Complemental strand, 22388092 - 22388018
Alignment:
Q  46 gtttgtataaacaacttatttaagcgcttaaaacataagttcttatcctttaagtgcttatatataaactatttc 120  Q
    ||||| |||||||||||| ||||||||||| |||||||   |||||| |||||||||||||  |||| |||||||    
T  22388092 gtttggataaacaacttaattaagcgcttataacataaacacttatcatttaagtgcttatggataagctatttc 22388018  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 271
Target Start/End: Complemental strand, 44615109 - 44615030
Alignment:
Q  192 atgtcacaagttgttatcataagctctccgaaacagtcttgcaagttcttatgccaagagataaggtcaattaagtcaat 271  Q
    |||||| |||||||| |||||||||||||  |||||| ||||||||  |||||| |  ||||||| ||||||||| ||||    
T  44615109 atgtcataagttgttttcataagctctcctgaacagttttgcaagtggttatgctagtagataagctcaattaaggcaat 44615030  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 25511715 - 25511771
Alignment:
Q  215 ctctccgaaacagtcttgcaagttcttatgccaagagataaggtcaattaagtcaat 271  Q
    |||||| |||||||||||||||||| ||||||   ||||||| |||| |||||||||    
T  25511715 ctctcccaaacagtcttgcaagttcgtatgcctgtagataagttcaaataagtcaat 25511771  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 178 - 270
Target Start/End: Original strand, 15579533 - 15579625
Alignment:
Q  178 aacaacttaacgaaatgtcacaagttgttatcataagctctccgaaacagtcttgcaagttcttatgccaagagataaggtcaattaagtcaa 270  Q
    |||||||||  || |||||| ||||||||  || ||||||||| |||||||||||||||||||||||| |  ||||||  |||||||||||||    
T  15579533 aacaacttatggacatgtcataagttgtttccacaagctctcccaaacagtcttgcaagttcttatgctagtagataaattcaattaagtcaa 15579625  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 138 - 230
Target Start/End: Original strand, 30918122 - 30918215
Alignment:
Q  138 ttttcataagttgtcttagagag--tatcaaaataagaagaaaacaacttaacgaaatgtcacaagttgttatcataagctctccgaaacagtct 230  Q
    |||||||||||| |||| |||||  |||  |||||||  ||||||||||||  |||||||||||||||||| ||||||||||||  |||||||||    
T  30918122 ttttcataagttttcttggagagcttatggaaataagctgaaaacaacttat-gaaatgtcacaagttgttttcataagctctctcaaacagtct 30918215  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 255
Target Start/End: Complemental strand, 30191146 - 30191083
Alignment:
Q  192 atgtcacaagttgttatcataagctctccgaaacagtcttgcaagttcttatgccaagagataa 255  Q
    |||||| ||||||||  |||||||||||| |||||||||  ||||| |||||||||| ||||||    
T  30191146 atgtcataagttgtttccataagctctcccaaacagtctaacaagtgcttatgccaatagataa 30191083  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 26499593 - 26499633
Alignment:
Q  44 atgtttgtataaacaacttatttaagcgcttaaaacataag 84  Q
    ||||||| |||||||||||| ||||| ||||||||||||||    
T  26499593 atgtttgaataaacaacttaattaagtgcttaaaacataag 26499633  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 120
Target Start/End: Original strand, 26516180 - 26516254
Alignment:
Q  46 gtttgtataaacaacttatttaagcgcttaaaacataagttcttatcctttaagtgcttatatataaactatttc 120  Q
    ||||| |||||||||||| ||||||||||| | ||||||  |||||| | ||||||||||| ||||| |||||||    
T  26516180 gtttggataaacaacttaattaagcgcttatagcataagcgcttatcatataagtgcttatgtataagctatttc 26516254  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 231
Target Start/End: Original strand, 29659344 - 29659453
Alignment:
Q  122 tacaagttataaattgttttcataagttgtcttagagag--tatcaaaataagaagaaaacaacttaacgaaatgtcacaagttgttatcataagctctc 219  Q
    |||||||||||| ||||||||||||||| ||||||||||  |||  |||||||  ||||||||||||  || | |||| ||| |||| |||||| |||||    
T  29659344 tacaagttataagttgttttcataagttatcttagagagtttatataaataagctgaaaacaactta--gatacgtcataagctgttttcataatctctc 29659441  T
Q  220 cgaaacagtctt 231  Q
    | || |||||||    
T  29659442 caaaccagtctt 29659453  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 120
Target Start/End: Complemental strand, 20982324 - 20982249
Alignment:
Q  45 tgtttgtataaacaacttatttaagcgcttaaaacataagttcttatcctttaagtgcttatatataaactatttc 120  Q
    |||||| |||||||||||  ||||| ||||| | ||||||| |||||| | ||||||||||| ||||| |||||||    
T  20982324 tgtttggataaacaacttcattaagtgcttatagcataagtgcttatcatataagtgcttatgtataagctatttc 20982249  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 106
Target Start/End: Original strand, 31723696 - 31723755
Alignment:
Q  47 tttgtataaacaacttatttaagcgcttaaaacataagttcttatcctttaagtgcttat 106  Q
    |||| |||||| ||||| ||||||||||| ||||||| |||||||| ||||||| |||||    
T  31723696 tttggataaacgacttaattaagcgcttataacataaattcttatcatttaagtacttat 31723755  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 244
Target Start/End: Original strand, 4619780 - 4619824
Alignment:
Q  200 agttgttatcataagctctccgaaacagtcttgcaagttcttatg 244  Q
    ||||||| ||||||||||||| ||||||| |||||||| ||||||    
T  4619780 agttgttttcataagctctcccaaacagtgttgcaagtgcttatg 4619824  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 29318755 - 29318820
Alignment:
Q  47 tttgtataaacaacttatttaagcgcttaaaacataagttcttatcctttaagtgcttatatataa 112  Q
    |||| ||||||||  || ||||||||||||||||||||| |||||| | |||||||||||| ||||    
T  29318755 tttggataaacaaaataattaagcgcttaaaacataagtgcttatcatataagtgcttatacataa 29318820  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 33192085 - 33192149
Alignment:
Q  56 acaacttatttaagcgcttaaaacataagttcttatcctttaagtgcttatatataaactatttc 120  Q
    |||||||| ||||||||||||| |||||  |||||||    ||||||||||||| ||||||||||    
T  33192085 acaacttaattaagcgcttaaagcataaactcttatcacacaagtgcttatataaaaactatttc 33192149  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 119
Target Start/End: Original strand, 42826269 - 42826341
Alignment:
Q  47 tttgtataaacaacttatttaagcgcttaaaacataagttcttatcctttaagtgcttatatataaactattt 119  Q
    |||| |||||||||||| ||||||||||||| ||||  | || | | | ||||||||||||||||| ||||||    
T  42826269 tttggataaacaacttaattaagcgcttaaagcatacatactcaccatataagtgcttatatataagctattt 42826341  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 4003782 - 4003714
Alignment:
Q  52 ataaacaacttatttaagcgcttaaaacataagttcttatcctttaagtgcttatatataaactatttc 120  Q
    |||||||||||| ||||| ||||| | |||||||| |||| || ||||||||||| ||||| |||||||    
T  4003782 ataaacaacttaattaagtgcttatagcataagtttttatgctataagtgcttatgtataagctatttc 4003714  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 245
Target Start/End: Complemental strand, 2460182 - 2460103
Alignment:
Q  166 aaataagaagaaaacaacttaacgaaatgtcacaagttgttatcataagctctccgaaacagtcttgcaagttcttatgc 245  Q
    |||||||  ||||||||||||| || |||||| ||||||||  |||||||||||  |||||||||  ||||| |||||||    
T  2460182 aaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctctcaaacagtctcacaagtacttatgc 2460103  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 3155055 - 3155096
Alignment:
Q  43 tatgtttgtataaacaacttatttaagcgcttaaaacataag 84  Q
    |||||||| |||||||||||||||||||||||| | ||||||    
T  3155055 tatgtttggataaacaacttatttaagcgcttatagcataag 3155096  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 230
Target Start/End: Original strand, 2996569 - 2996676
Alignment:
Q  125 aagttataaattgttttcataagttgtcttagagag--tatcaaaataagaagaaaacaacttaacgaaatgtcacaagttgttatcataagctctccga 222  Q
    ||||||||| ||||||||||||| | |||| |||||  ||| ||||||||  ||||| | ||||  || |||||| |||||||| ||||||||||||  |    
T  2996569 aagttataagttgttttcataagctatcttggagagcgtatgaaaataagttgaaaaaagcttatggacatgtcataagttgttttcataagctctctca 2996668  T
Q  223 aacagtct 230  Q
    ||||||||    
T  2996669 aacagtct 2996676  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 245
Target Start/End: Complemental strand, 27123383 - 27123304
Alignment:
Q  166 aaataagaagaaaacaacttaacgaaatgtcacaagttgttatcataagctctccgaaacagtcttgcaagttcttatgc 245  Q
    |||||||  ||||||||||||| || |||||| ||||||||  |||||||||||  |||||||||  ||||| |||||||    
T  27123383 aaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctctcaaacagtctcacaagtacttatgc 27123304  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 270
Target Start/End: Complemental strand, 33534201 - 33534096
Alignment:
Q  165 aaaataagaagaaaacaacttaacgaaatgtcacaagttgttatcataagctctccgaaacagtcttgcaagttcttatgccaagagataaggtcaatta 264  Q
    ||||||||  ||||||||||||  || ||||||||| ||||| ||||||||||||  ||| | |||  ||||| |||||| ||  ||||||| |||| ||    
T  33534201 aaaataagctgaaaacaacttatggatatgtcacaatttgttttcataagctctctcaaatactctcacaagtacttatgtcactagataagctcaaata 33534102  T
Q  265 agtcaa 270  Q
    ||||||    
T  33534101 agtcaa 33534096  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 254
Target Start/End: Complemental strand, 36646456 - 36646325
Alignment:
Q  125 aagttataaattgttttcataagttgtcttagagagt--atcaaaataagaagaaaacaacttaacgaaatgtcacaagttgttatcataagctctccga 222  Q
    ||||||||| ||||||||||||| | || ||||||||  ||  |||||||| ||||||| ||||  || ||| || |||| |||  |||||||||||| |    
T  36646456 aagttataacttgttttcataagctatcctagagagtttatagaaataagatgaaaacagcttatggacatgccataagtggtttccataagctctccca 36646357  T
Q  223 aacagtcttgcaagttcttatgccaagagata 254  Q
    || |||||| ||||| | |||||||| |||||    
T  36646356 aatagtcttacaagtgcctatgccaatagata 36646325  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 37273173 - 37273237
Alignment:
Q  166 aaataagaagaaaacaacttaacgaaatgtcacaagttgttatcataagctctccgaaacagtct 230  Q
    |||||||  ||||||||||||  || |||||| ||||||||  |||||||||||| |||||||||    
T  37273173 aaataagttgaaaacaacttatggacatgtcataagttgtttccataagctctcccaaacagtct 37273237  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 112
Target Start/End: Complemental strand, 48272028 - 48271968
Alignment:
Q  52 ataaacaacttatttaagcgcttaaaacataagttcttatcctttaagtgcttatatataa 112  Q
    ||||||| |||| ||||| ||||||||||||||| |||| | | ||||||||||| |||||    
T  48272028 ataaacagcttaattaagagcttaaaacataagtacttaacatataagtgcttatgtataa 48271968  T

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