View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21369_high_3 (Length: 388)
Name: NF21369_high_3
Description: NF21369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21369_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 117 - 377
Target Start/End: Original strand, 2446257 - 2446517
Alignment:
| Q |
117 |
acttgagcttggaaaatgggtggaatcatatgttgagaagaaaaatatcccaaaatctgtggaactctgtaacgcactgatagacatgtttgcaaagtgt |
216 |
Q |
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| T |
2446257 |
acttgagcttggaaaatgggtggaatcatatgttgagaagaaaaatatcccaaaatctgtggaactctgtaacgcactgatagacatgtttgcaaagtgt |
2446356 |
T |
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| Q |
217 |
ggcaatgttgacaaagctatcaaattgttcagacaaatggactcacgcaccatagtttcatggacttcagtaattgctggtctcgcgatgcatggtcgtg |
316 |
Q |
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| T |
2446357 |
ggcaatgttgacaaagctatcaaattgttcagacaaatggactcacgcaccatagtttcatggacttcagtaattgctggtctcgcgatgcatggtcgtg |
2446456 |
T |
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| Q |
317 |
gtttagacgccgtttctctatttgatgaaatggttgaaaatgggataacacctgatgatgt |
377 |
Q |
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| T |
2446457 |
gtttagacgccgtttctctatttgatgaaatggttgaaaatgggataacacctgatgatgt |
2446517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 2446156 - 2446033
Alignment:
| Q |
1 |
ataatgtttgacaagcaggtcagaacacatcagnnnnnnncaagctctttctgtatatcaatagtaaaacaggattacaagaaaaggatgtgatgtatta |
100 |
Q |
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| T |
2446156 |
ataatgtttgacaagcaggtcagaacacatcagtttttttcaagctctttctgtatatcaatagtaaaacaggattacaagaaaaggatgtgatgtatta |
2446057 |
T |
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| Q |
101 |
agtttttgtctttactacttgagc |
124 |
Q |
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| T |
2446056 |
agtttttgtctttactacttgagc |
2446033 |
T |
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