View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21369_high_4 (Length: 338)
Name: NF21369_high_4
Description: NF21369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21369_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 6 - 158
Target Start/End: Original strand, 16192876 - 16193028
Alignment:
| Q |
6 |
ctgaaatgaataacaaataatgatgatgataattgtttagaacaaatataagactttacttgaagatggtaaggatactcacaatggtggtggagcactt |
105 |
Q |
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| T |
16192876 |
ctgaaatgaataagaaataatgatgatgataattgtttaaaacaaatataagactttacttgaagatggtaaggatactcacaatggtggtggagcactt |
16192975 |
T |
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| Q |
106 |
agttggtggttcaccctagacatcacctaagaataataatgttaataaaatta |
158 |
Q |
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| T |
16192976 |
agttggtggttcaccctagacatcacctaagaataataatgttaataaaatta |
16193028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 216 - 322
Target Start/End: Original strand, 16193067 - 16193173
Alignment:
| Q |
216 |
aatatatatttatcagtcaaaaggctctcctcggcacaaaaagtgcacgagaataactttgagaatcaaatgtatattgcaatactcgagaaagaccaac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
16193067 |
aatatatatttatcagtcaaaaggctctcctcggcacaaaaagtgcacgagaataactttgagaatcaaatgtatattacaatactcgagaaagaccaac |
16193166 |
T |
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| Q |
316 |
acgaaaa |
322 |
Q |
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| T |
16193167 |
acgaaaa |
16193173 |
T |
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