View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21369_high_5 (Length: 318)
Name: NF21369_high_5
Description: NF21369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21369_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 16 - 302
Target Start/End: Original strand, 55162506 - 55162792
Alignment:
| Q |
16 |
atcatagctagagggcacaatatattctgggaagaccctaaatacaatcctgcatgggttcttaaccttacaggtacacagttaagatctgctgtgaatt |
115 |
Q |
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| T |
55162506 |
atcatagctagagggcacaatatattctgggaagaccctaaatacaatcctgcatgggttcttaaccttacaggtacacagttaagatctgctgtgaatt |
55162605 |
T |
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| Q |
116 |
cacgaattcaaagtctcatgaaccaatacaaaacagaattcatacattgggatatcagtaacgaaatgcttcattttgatttctacgaacaaaggcttgg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55162606 |
cacgaattcaaagtctcatgaaccaatacaaaacagaattcatacattgggatatcagtaacgaaatgcttcattttgatttctacgaacaaaggcttgg |
55162705 |
T |
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| Q |
216 |
acccaatgctacatttcatttctttgaggcagcacatgaatcagatcctctagcaactctgtttatgaatgacttcaatgttgtaga |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55162706 |
acccaatgctacatttcatttctttgaggcagcacatgaatcagatcctctagcaactctgtttatgaatgacttcaatgttgtaga |
55162792 |
T |
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