View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21369_high_8 (Length: 267)
Name: NF21369_high_8
Description: NF21369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21369_high_8 |
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| [»] chr3 (3 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 139; Significance: 8e-73; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 113 - 267
Target Start/End: Original strand, 51856825 - 51856978
Alignment:
| Q |
113 |
ggtccttctaaaaatcatttagctccttcacgatgcgctttgaagccgttataattgaaacttcaaaataacaacaaatggaaaacataataaagattat |
212 |
Q |
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| T |
51856825 |
ggtccttctaaaaatcatttagctccttcacgatgcgctttgaagccgttataattggaacttcaaaataacaacaaatggaaaacataataaagattat |
51856924 |
T |
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| Q |
213 |
catgcaacacatcgttggatctagaaagcaataaaaagaaattgaaaggaaaaaa |
267 |
Q |
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| T |
51856925 |
catgcaacgcatcgttggatctagaaagcaataaaaag-aattgaaaggaaaaaa |
51856978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 51856737 - 51856620
Alignment:
| Q |
1 |
aattaaagtttaatttttattattaaagtttgaagggtaacaagccactcttatattggttgttgattattaaacagggaacataataataagacatgat |
100 |
Q |
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| T |
51856737 |
aattaaagtttaatttttattattaaagtttgaagggtaacaagccactcttatattggttgttgattattaaacagggaacataataataagacatgat |
51856638 |
T |
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| Q |
101 |
tctagtgaaattggtcct |
118 |
Q |
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| T |
51856637 |
tctagtgaaattggtcct |
51856620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 58
Target Start/End: Complemental strand, 51856569 - 51856538
Alignment:
| Q |
27 |
agtttgaagggtaacaagccactcttatattg |
58 |
Q |
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| T |
51856569 |
agtttgaagggtaacaagccactcttatattg |
51856538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 113 - 267
Target Start/End: Original strand, 8945869 - 8946012
Alignment:
| Q |
113 |
ggtccttctaaaaatcatttagctccttcacgatgcgctttgaagccgttataattgaaacttcaaaataacaacaaatggaaaacataataaagattat |
212 |
Q |
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| T |
8945869 |
ggtcgttctaaaaatcatttagctccttcacgatgtgctttgaagccgttataattgaaacttcaaaataac-----------aacataataaagattat |
8945957 |
T |
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| Q |
213 |
catgcaacacatcgttggatctagaaagcaataaaaagaaattgaaaggaaaaaa |
267 |
Q |
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| T |
8945958 |
catgcaacacatcgttggatctagaaagcaataaaatgaaattgaaaggaaaaaa |
8946012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 8945781 - 8945724
Alignment:
| Q |
1 |
aattaaagtttaatttttattattaaagtttgaagggtaacaagccactcttatattg |
58 |
Q |
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| T |
8945781 |
aattaaagtttgatttttattattaaagtttgaagggtaacaagccactcttatattg |
8945724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 113 - 209
Target Start/End: Original strand, 43263075 - 43263171
Alignment:
| Q |
113 |
ggtccttctaaaaatcatttagctccttcacgatgcgctttgaagccgttataattgaaacttcaaaataacaacaaatggaaaacataataaagat |
209 |
Q |
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| T |
43263075 |
ggtccttctacaaatcctttagctcattcacgatgcactttgaagccgtaataattgaaacttcaaaataacaacaaatgaaaaacataataaagat |
43263171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 5 - 89
Target Start/End: Complemental strand, 43262982 - 43262898
Alignment:
| Q |
5 |
aaagtttaatttttattattaaagtttgaagggtaacaagccactcttatattggttgttgattattaaacagggaacataataa |
89 |
Q |
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| T |
43262982 |
aaagtttaatttttattattaaagtttgaagggtaacaatccactctcatattggttgttgattattgaacaggcaacataataa |
43262898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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