View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21369_low_1 (Length: 471)
Name: NF21369_low_1
Description: NF21369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21369_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 11 - 439
Target Start/End: Original strand, 28553200 - 28553627
Alignment:
| Q |
11 |
cataggttcaaattgaattaaggagaactagtagattgcatggtttcaaatagtatcatagaggttcatcattcaatcataatctaatgagtttagctac |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
28553200 |
cataggttcaaattgaattaaggagaactagtagattgcatggtttcaaatagtatcatagaggttcatcattcaattataatctaatgagtttagctac |
28553299 |
T |
|
| Q |
111 |
tcataatagtaacaaaatacataatcgaaggttaaaggaataatacatgcaaatagtgtgacaataatcttcaatcttgttgacaaaggttgaaaatcgc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28553300 |
tcataatagtaacaaaatacataatcgaaggttaaaggaataatacatgcaaatagtgtgacaataatcttcaatcttgttgacaaaggttgaaaatcgc |
28553399 |
T |
|
| Q |
211 |
cacttcaggtcgtagggatcgcgacttatgtcttttaagtcttcaaaattcataatcagttgcatccggatgaaattttgaaattatagagaatatttca |
310 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
28553400 |
cacttcaggtcgtagggatcgcaccttatgtcttttaagtcttcaaaattcataatcagttgcatctggatgaaattttgaaattatagataatatttca |
28553499 |
T |
|
| Q |
311 |
gtatacgcttgcgtgtcgcgtaggactctacgtgcgttacat-ggttcagttgaactagcttcacagttaggcatcaaatgcatatctagcgtagattaa |
409 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28553500 |
gtatatgcttgcgcgtcgcgtaggactctacgtgcgttacatgggttcagttgaactagcttcacagttaggcat--aatgcatatctagcgtagattaa |
28553597 |
T |
|
| Q |
410 |
cattgtgtaatagtatcatctgaatccatg |
439 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |
|
|
| T |
28553598 |
cattgtgtaatagtataatctgaatccatg |
28553627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 74 - 219
Target Start/End: Complemental strand, 31008133 - 31007988
Alignment:
| Q |
74 |
gttcatcattcaatcataatctaatgagtttagctactcataatagtaacaaaatacataatcgaaggttaaaggaataatacatgcaaatagtgtgaca |
173 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||| ||| ||| | || |||||||| || | |||| |||| ||||||||||| | |||||| |
|
|
| T |
31008133 |
gttcatcattcaatcataatctaaagagtttagttacacatgataatggtcaataacataatcaaaagataaaagaatgatacatgcaaagatagtgaca |
31008034 |
T |
|
| Q |
174 |
ataatcttcaatcttgttgacaaaggttgaaaatcgccacttcagg |
219 |
Q |
| |
|
| |||||||||||||| ||| ||||||||| |||||||||||| |
|
|
| T |
31008033 |
ccactcttcaatcttgtttccaatggttgaaaaacgccacttcagg |
31007988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 29636502 - 29636566
Alignment:
| Q |
56 |
tcaaatagtatcatagaggttcatcattcaatcataatctaatgagtttagctactcataatagt |
120 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||| ||| ||||||||||||| | ||||| ||||| |
|
|
| T |
29636502 |
tcaaatagtaccatagatgttcatcattcaatcctaacctaatgagtttaggtgctcatgatagt |
29636566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 158
Target Start/End: Original strand, 52256612 - 52256676
Alignment:
| Q |
91 |
aatctaatgagtttagctactcataatagtaacaaaatacataatcgaaggttaaaggaataatacat |
158 |
Q |
| |
|
||||||| |||||||||||||||||||||||| || |||||||| |||||| || ||| ||||||| |
|
|
| T |
52256612 |
aatctaacgagtttagctactcataatagtaataa---acataatcaaaggtttaaagaacaatacat |
52256676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 26511811 - 26511771
Alignment:
| Q |
74 |
gttcatcattcaatcataatctaatgagtttagctactcat |
114 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| |||||||| |
|
|
| T |
26511811 |
gttcaccattcaatcatgatctaatgagtttaactactcat |
26511771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 8355532 - 8355585
Alignment:
| Q |
49 |
catggtttcaaatagtatcatagaggttcatcattcaatcataatctaatgagt |
102 |
Q |
| |
|
|||||||| ||| |||| |||||| ||| || |||||||||||||||||||||| |
|
|
| T |
8355532 |
catggttttaaacagtaccatagatgtttattattcaatcataatctaatgagt |
8355585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 136
Target Start/End: Original strand, 31258807 - 31258888
Alignment:
| Q |
55 |
ttcaaatagtatcatagaggttcatcattcaatcataatctaatgagtttagctactcataatagtaacaaaatacataatc |
136 |
Q |
| |
|
|||||| | ||||||| | |||||||||| |||| ||||||||||||||||||||| || ||| ||| ||| |||||||| |
|
|
| T |
31258807 |
ttcaaacaatatcatacaagttcatcattaaatctaaatctaatgagtttagctacttatcatattaataaacaacataatc |
31258888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University