View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21369_low_2 (Length: 393)
Name: NF21369_low_2
Description: NF21369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21369_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 13 - 212
Target Start/End: Original strand, 50634103 - 50634302
Alignment:
| Q |
13 |
gtaatttgggtttttcattgtttttaagttatatccggcttagtcatttgttgttggctaatatgtctggggtctctacctctcgatagttttctttaac |
112 |
Q |
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| T |
50634103 |
gtaatttgggtttttcattgtttttgagttatatccggcttagtcatttgttgttggctaatatgtctggggtctctacctctcgatagttttctttaac |
50634202 |
T |
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| Q |
113 |
tggggttggccatctttgttacaaaacctctctgtttggacttggatgctcggaatcaaaactaatccagttgcatgttatagctgctgcataaagcatc |
212 |
Q |
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| T |
50634203 |
tggggttggccatctttgttacaaagcccctctgtttggacttggatactcggaatcaaaactaatctagttgcatgttatagctgctgcataaagcatc |
50634302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 277 - 388
Target Start/End: Original strand, 50634322 - 50634433
Alignment:
| Q |
277 |
agtattactgtcatgttataactcataacagtactaaaaagaacaagttaaagaaaagccacaaggattagattagtggtgaaggtcttgagtagtttgt |
376 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50634322 |
agtattactgtcgtgttataactcataacagtactaaaaagaacaagctaaagaaaagccacaaggattagattagtggtgaaggtcttgagtagtttgt |
50634421 |
T |
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| Q |
377 |
atgaggtctgtg |
388 |
Q |
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| T |
50634422 |
atgaggtctgtg |
50634433 |
T |
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