View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21369_low_6 (Length: 313)
Name: NF21369_low_6
Description: NF21369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21369_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 300
Target Start/End: Original strand, 54302703 - 54302985
Alignment:
| Q |
18 |
ccaaaaacaatcagctgccgtagtgataatatagacttcaatacctcttaaagccaaatgatctgcaacaaattctctaatctgcagacaatttcaatgt |
117 |
Q |
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| T |
54302703 |
ccaaaaacaatcagctgccgtagtgataatatggacttcaatacctcttaaagccaaatgatccgcaacaaattctctaatctgcagacaatttgaatgt |
54302802 |
T |
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| Q |
118 |
aaagaaagagttaacacgatggcaactttagagcttgacattttgaaaaaagtaaagggtgatttcagaatnnnnnnngataaacctgtatatatggagc |
217 |
Q |
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| T |
54302803 |
aaagaaagagctaacactatggcaactttagagcttgacattctgaaaaaagtaaagggtgatttcagaataaaaaaagataaacctgtatatatggagc |
54302902 |
T |
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| Q |
218 |
accgttcgccactttatacatgacaatcatgacttcctgctgcttccgtaacatttacagaaaaatgtcaccgcgttcatctc |
300 |
Q |
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| T |
54302903 |
atcgttcgccactttatatatgacaatcatgacttcctgctgcttccgtaacatttacagaaaaatgtcaccacgttcatctc |
54302985 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 31306903 - 31306850
Alignment:
| Q |
54 |
ttcaatacctcttaaagccaaatgatctgcaacaaattctctaatctgcagaca |
107 |
Q |
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| T |
31306903 |
ttcaatacctcttagtgccatattttctgcaacaaaatctctaatctgcagaca |
31306850 |
T |
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