View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21369_low_7 (Length: 307)

Name: NF21369_low_7
Description: NF21369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21369_low_7
NF21369_low_7
[»] chr2 (1 HSPs)
chr2 (1-290)||(43200133-43200422)


Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 43200422 - 43200133
Alignment:
Q  1 cttcaccgtatcgttttcctctctctactctctcatgctccctccctgaatcacaaccagaaccaaccaccacaacctcaattcccaaaactccaaaccc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43200422 cttcaccgtatcgttttcctctctctactctctcatgctccctccctgaatcacaaccagaaccaaccaccacaacctcaattcccaaaactccaaaccc 43200323  T
Q  101 taacacctccacttcctatttccctaaacgcggccaaacccttgaactactctgcgaatccctcgctttcaaaggcaaaggtctttgcaaagttactgat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43200322 taacacctccacttcctatttccctaaacgcggccaaacccttgaactactctgcgaatccctcgctttcaaaggcaaaggtctttgcaaagttactgat 43200223  T
Q  201 accggttttgtagtcatgtgtgaccgtgctcttcccggtgaacgcttcattgggaggattactcgtaaaaaggggaattacgctgaagct 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43200222 accggttttgtagtcatgtgtgaccgtgctcttcccggtgaacgcttcattgggaggattactcgtaaaaaggggaattacgctgaagct 43200133  T

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