View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21369_low_8 (Length: 290)
Name: NF21369_low_8
Description: NF21369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21369_low_8 |
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| [»] chr3 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 10 - 290
Target Start/End: Original strand, 51856281 - 51856561
Alignment:
| Q |
10 |
gacatcatcacagagcnnnnnnntaagtatctacattgtcaaaagggaaaataggtagagaatgtcataaaaagaattcttattatgtataataatgttg |
109 |
Q |
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| T |
51856281 |
gacatcatcacagagcaaaaaaataagtatctacattgtcaaaagggaaaataggtagagaatgtcataaaaagaattcttattatgtataataatgttg |
51856380 |
T |
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| Q |
110 |
ctacttttagttaaattgattttatttttctgtaatgcctttgacctattgttgcaataaattgtcaagaatattgcttacaaaataacagtaatagtta |
209 |
Q |
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| T |
51856381 |
ctacttttagttaaattgattttatttttctgtaatgcctttgacctattgttgcaataaattgtcaagaatattgcttacaaaataacagtaatagtta |
51856480 |
T |
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| Q |
210 |
acattacattgaactttgagactgattttcatctctaattttcgtctnnnnnnncagcaatataagagtggcttgttaccc |
290 |
Q |
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| T |
51856481 |
acattacattgaactttgagactgattttcatctctaattttcgtctaaaaaaacagcaatataagagtggcttgttaccc |
51856561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 10 - 290
Target Start/End: Original strand, 8945467 - 8945747
Alignment:
| Q |
10 |
gacatcatcacagagcnnnnnnntaagtatctacattgtcaaaagggaaaataggtagagaatgtcataaaaagaattcttattatgtataataatgttg |
109 |
Q |
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| T |
8945467 |
gacatcatcacagagcaaaaaaataagtatctacattgtcaaaagggaaaataggtagagaatgtcataaaaagaattcttattatgtataataatgttg |
8945566 |
T |
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| Q |
110 |
ctacttttagttaaattgattttatttttctgtaatgcctttgacctattgttgcaataaattgtcaagaatattgcttacaaaataacagtaatagtta |
209 |
Q |
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| T |
8945567 |
ctacttttagttaaattgattttatttttctgtaatgcctttgacctattgttgcaataaattgtcaagaatattgcttacaaaataacagtaatagtta |
8945666 |
T |
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| Q |
210 |
acattacattgaactttgagactgattttcatctctaattttcgtctnnnnnnncagcaatataagagtggcttgttaccc |
290 |
Q |
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| T |
8945667 |
acattacattgaactttgagactgattttcatctataattttcgtctaaaaaaacagcaatataagagtggcttgttaccc |
8945747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 128 - 244
Target Start/End: Complemental strand, 128536 - 128421
Alignment:
| Q |
128 |
attttatttttctgtaatgcctttgacctattgttgcaataaattgtcaagaatattgcttacaaaataacagtaatagttaacattacattgaactttg |
227 |
Q |
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||||| |||||||||||| |||||||||||||||||||||||||||| |||| |||||| ||||||| ||||||||||||||| | |||||||||||||| |
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| T |
128536 |
attttttttttctgtaatacctttgacctattgttgcaataaattgttaagagtattgc-tacaaaagaacagtaatagttaataatacattgaactttg |
128438 |
T |
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| Q |
228 |
agactgattttcatctc |
244 |
Q |
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| T |
128437 |
agactaattttcatctc |
128421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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