View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2136_high_2 (Length: 436)
Name: NF2136_high_2
Description: NF2136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2136_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 173 - 422
Target Start/End: Original strand, 28395735 - 28395982
Alignment:
| Q |
173 |
cgcttgagttaaatattcaatcgcattagttattaggtttttatattagatctaactcgttgttttaaaacctgcttataagacgaagatagtctctatt |
272 |
Q |
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| T |
28395735 |
cgcttgagttaaatattcaatcgcattagttattaggtttttatattagatctaactcgttgttttaaaacctgcttataagacgaagatagtctctatt |
28395834 |
T |
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| Q |
273 |
tgtaaaatctaatcaaaccgtgtgtcttttttcaggttcggttcaatgatcgaagcgtatatccaccccacttcgcgacagggcatataggaagaatccg |
372 |
Q |
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||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28395835 |
tgtaaaatctaatcaaaccgtat--cttttttcaggttcggttcaatgatcgaagtgtatatccaccccacttcgcgacagggcatataggaagaatccg |
28395932 |
T |
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| Q |
373 |
aggagacaattgcatacaaagacatggaattcatggattgtataggttgt |
422 |
Q |
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| T |
28395933 |
aggagacaattgcatacaaagacatggaattcatggattgtataggttgt |
28395982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 11 - 180
Target Start/End: Original strand, 28395196 - 28395368
Alignment:
| Q |
11 |
cacagaaaataatacatatgaaccaacaacatggcaaattatatttgaaca---acatgacttaatgagtggaaactacacactacaacttgccttggcc |
107 |
Q |
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| T |
28395196 |
cacagaaaataatacatatgaaccaacaacatggcaaattatatttgaacatcaacatgacttaaagagtggaaactacacactacaacttgccttggcc |
28395295 |
T |
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| Q |
108 |
agtgctgctgatgcttacctacaggtacatcattaccnnnnnnnnaatcaatttagttttcgcaacgcttgag |
180 |
Q |
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| T |
28395296 |
agtgctgctgatgcttacctacaggtacatcattaccttttttttaatcaatttagttttcgcaacgcttgag |
28395368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 28386876 - 28387002
Alignment:
| Q |
18 |
aataatacatatgaaccaacaacatggcaaattatatttgaaca---acatgacttaatgagtggaaactacacactacaacttgccttggccagtgctg |
114 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| ||| ||| |||| ||||||||||||||||| ||||| |||||||| ||||||| |
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| T |
28386876 |
aataaaacatatgaaccaacaacatggcaaattatatttgaacatgaacaagacataatcagtggaaactacacactgcaactggccttggctagtgctg |
28386975 |
T |
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| Q |
115 |
ctgatgcttacctacaggtacatcatt |
141 |
Q |
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| T |
28386976 |
ccgatgctgacctacaggtacatcatt |
28387002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 9 - 141
Target Start/End: Complemental strand, 28408925 - 28408790
Alignment:
| Q |
9 |
agcacagaaaataatacatatgaaccaacaacatggcaaattatatttgaac---aacatgacttaatgagtggaaactacacactacaacttgccttgg |
105 |
Q |
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||||||| |||||| ||||||||||||||||||||||| ||||||||||||| || ||||| |||| ||||||||||||||||| ||||| ||||| | |
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| T |
28408925 |
agcacaggaaataaaacatatgaaccaacaacatggcagattatatttgaacataaaaatgacataatcagtggaaactacacacttcaactggccttag |
28408826 |
T |
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| Q |
106 |
ccagtgctgctgatgcttacctacaggtacatcatt |
141 |
Q |
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| T |
28408825 |
ctagtgctgctgattctaacctacaggcacgtcatt |
28408790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 422
Target Start/End: Original strand, 28387103 - 28387212
Alignment:
| Q |
304 |
tcaggttcggttcaatgatcgaagcgtatatccaccccacttcgcgacagggcatataggaagaatccgaggagacaattgcatacaaagacatggaatt |
403 |
Q |
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|||||| ||||||||||||| ||| |||||||||| ||||| |||||||||| |||| ||||||||||| |||| ||||||||||||| |
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| T |
28387103 |
tcaggtacggttcaatgatcctagcatatatccaccgcactttgcgacagggctcatag---------gaggagacaatgccatagcaagacatggaatt |
28387193 |
T |
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| Q |
404 |
catggattgtataggttgt |
422 |
Q |
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| T |
28387194 |
catggattgcattggttgt |
28387212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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