View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2136_high_3 (Length: 389)
Name: NF2136_high_3
Description: NF2136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2136_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 19 - 382
Target Start/End: Complemental strand, 47721348 - 47720985
Alignment:
| Q |
19 |
agggaggaagaaggaagaatggggtaatggttttgttggcttttcaattggcagcgaatactatgatctcttcaataccccacctgcaataccccaccat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47721348 |
agggaggaagaaggaagaatggggtaatggttttgttggcttttcaattggcagcgaatactatgatctcttcaataccccacctgcaataccccaccat |
47721249 |
T |
|
| Q |
119 |
ggacttatcttttttatctgagtttgatcctttcgaaagttaggttcaggcaagggctcacttcacataatgccaacatcttcgttgatgaggtgtggaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47721248 |
ggacttatcttttttatctgagtttgatcctttcgaaagttaggttcaggcaagggctcacttcacataatgccaacatcttcgttgatgaggtgtggaa |
47721149 |
T |
|
| Q |
219 |
gtcttggaaaaccacaactctagttgtgtttctaatactacgatcttgtcttatcatcttacaatggaagctaacaacatgtgtgttattcataacatga |
318 |
Q |
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||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47721148 |
gtcttggaaaaccacaactttagttgtgtttctaatactgcgatctcgtcttatcatcttacaatggaagctaacaacatgtgtgttattcataacatga |
47721049 |
T |
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| Q |
319 |
cttgcttttctagttcaccgaatacaagtcttatggacaaataggtttaatcaaattcttctca |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47721048 |
cttgcttttctagttcaccgaatacaagtcttatggacaaataggtttaatcaaattcttctca |
47720985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 19 - 382
Target Start/End: Complemental strand, 47728340 - 47727977
Alignment:
| Q |
19 |
agggaggaagaaggaagaatggggtaatggttttgttggcttttcaattggcagcgaatactatgatctcttcaataccccacctgcaataccccaccat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47728340 |
agggaggaagaaggaagaatggggtaatggttttgttggcttttcaattggcagcgaatactatgatctcttcaataccccacctgcaataccccaccat |
47728241 |
T |
|
| Q |
119 |
ggacttatcttttttatctgagtttgatcctttcgaaagttaggttcaggcaagggctcacttcacataatgccaacatcttcgttgatgaggtgtggaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47728240 |
ggacttatcttttttatctgagtttgatcctttcgaaagttaggttcaggcaagggctcacttcacataatgccaacatcttcgttgatgaggtgtggaa |
47728141 |
T |
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| Q |
219 |
gtcttggaaaaccacaactctagttgtgtttctaatactacgatcttgtcttatcatcttacaatggaagctaacaacatgtgtgttattcataacatga |
318 |
Q |
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||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47728140 |
gtcttggaaaaccacaactttagttgtgtttctaatactgcgatctcgtcttatcatcttacaatggaagctaacaacatgtgtgttattcataacatga |
47728041 |
T |
|
| Q |
319 |
cttgcttttctagttcaccgaatacaagtcttatggacaaataggtttaatcaaattcttctca |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47728040 |
cttgcttttctagttcaccgaatacaagtcttatggacaaataggtttaatcaaattcttctca |
47727977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 120 - 350
Target Start/End: Complemental strand, 47755023 - 47754796
Alignment:
| Q |
120 |
gacttatcttttttatctgagtttgatcctttcgaaagttaggttcaggcaagggctcacttcacataatgccaacatcttcgttgatgaggtgtggaag |
219 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
47755023 |
gacttatcttttttacatgagtttgatcctttcgaaagttaggttcaggcaaaggctcacttcacataataccaacatcttcgttgatgaggcgtggaag |
47754924 |
T |
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| Q |
220 |
tcttggaaaaccacaactctagttgtgtttctaatactacgatcttgtcttatcatcttacaatggaagctaacaacatgtgtgttattcataacatgac |
319 |
Q |
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|||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| || |
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| T |
47754923 |
tcttggaaaaccacaagtctaattgtgtttctaatactacgatctcgtcttatcatcttacaatggaagctaacaacatgtgtgttgctcataac---ac |
47754827 |
T |
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| Q |
320 |
ttgcttttctagttcaccgaatacaagtctt |
350 |
Q |
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|||||||||| |||||||||||||||||||| |
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| T |
47754826 |
ttgcttttctggttcaccgaatacaagtctt |
47754796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 160 - 296
Target Start/End: Complemental strand, 47709855 - 47709719
Alignment:
| Q |
160 |
aggttcaggcaagggctcacttcacataatgccaacatcttcgttgatgaggtgtggaagtcttggaaaaccacaactctagttgtgtttctaatactac |
259 |
Q |
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||||||| |||| ||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
47709855 |
aggttcaagcaaaggctcacttcacataatgctaacatcttcgatgatgaggtgtggtggtcttggaaaaccacaaatctagttgtgtttctaatactac |
47709756 |
T |
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| Q |
260 |
gatcttgtcttatcatcttacaatggaagctaacaac |
296 |
Q |
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|| | ||||||||||||||| ||||||||| ||||| |
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| T |
47709755 |
gaacccgtcttatcatcttactatggaagctcacaac |
47709719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 47714200 - 47714122
Alignment:
| Q |
19 |
agggaggaagaaggaagaatggggtaatggttttgttggcttttcaattggcagcgaatactatgatctcttcaatacc |
97 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
47714200 |
agggaggaagaaggaagaatggggtaatggttttgttggcttttcaattggcagcgaatattatgatctcttcaatacc |
47714122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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