View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2136_low_12 (Length: 215)
Name: NF2136_low_12
Description: NF2136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2136_low_12 |
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| [»] scaffold0781 (1 HSPs) |
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Alignment Details
Target: scaffold0781 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: scaffold0781
Description:
Target: scaffold0781; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 17 - 197
Target Start/End: Original strand, 5031 - 5211
Alignment:
| Q |
17 |
tatgaaaacatgtttataagacatttctctaatatttcatactttgtcccattttagctaatgcgagaaccaaaaaatcacatttaaatttttaattata |
116 |
Q |
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|||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
5031 |
tatgaaaacatgtttataagtcgtttctctaatatttcatactttgtccc-ttttagctaatgcgagaaccaaaaaatcacatttaaatttttaattaga |
5129 |
T |
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| Q |
117 |
tctcccattttactatattaaaaatactttaatcgttttcaagtattat-aaatcatacaccattccaagcctattgaaaaa |
197 |
Q |
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| T |
5130 |
tctcccattttactatattaaaaatactttaatcgttttcaagtattataaaatcatacaccattccaagcctattgaaaaa |
5211 |
T |
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Target: chr6 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 17 - 197
Target Start/End: Original strand, 2216574 - 2216754
Alignment:
| Q |
17 |
tatgaaaacatgtttataagacatttctctaatatttcatactttgtcccattttagctaatgcgagaaccaaaaaatcacatttaaatttttaattata |
116 |
Q |
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|||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2216574 |
tatgaaaacatgtttataagtcgtttctctaatatttcatactttgtccc-ttttagctaatgcgagaaccaaaaaatcacatttaaatttttaattaga |
2216672 |
T |
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| Q |
117 |
tctcccattttactatattaaaaatactttaatcgttttcaagtattat-aaatcatacaccattccaagcctattgaaaaa |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2216673 |
tctcccattttactatattaaaaatactttaatcgttttcaagtattataaaatcatacaccattccaagcctattgaaaaa |
2216754 |
T |
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