View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2136_low_5 (Length: 344)
Name: NF2136_low_5
Description: NF2136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2136_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 119; Significance: 9e-61; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 26568420 - 26568562
Alignment:
| Q |
16 |
actaaaaatgaaatgttactaacagttcacgatctgaattgaattagtttggttaagttcagttcacgaactatctattacaattcagttcttttaggtc |
115 |
Q |
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| T |
26568420 |
actaaaaatgaaatgttactaacagttcacgatctgaattaaattagtttggttaagttcagttcgagaactatctattacaatgcagttcttttaggtc |
26568519 |
T |
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| Q |
116 |
agtagattgattcaatttttcatatttataaacagacctaggg |
158 |
Q |
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| T |
26568520 |
agtagattaattcagtttttcatatttataaacagacctaggg |
26568562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 187 - 325
Target Start/End: Original strand, 26568591 - 26568730
Alignment:
| Q |
187 |
cttcaacaatcctatttgttagtt-aataataccaatttgatacagtatgattcacaaataataaattcaatt-nnnnnnngtacaatttga--tttttt |
282 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
26568591 |
cttcaacaatcctatttgttagtttaataataccaatttgttacagtttgattcacaaataataaattcaattaaaaaaaagtacaatttgatttttttt |
26568690 |
T |
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| Q |
283 |
ataaatcaaattcatcagttccaaaacacaagaccaatacgtt |
325 |
Q |
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||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
26568691 |
ataaatcaaat---tcagttcgaaaacacaagaccaatacgtt |
26568730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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