View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2136_low_9 (Length: 288)
Name: NF2136_low_9
Description: NF2136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2136_low_9 |
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| [»] scaffold0617 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 17 - 281
Target Start/End: Original strand, 655635 - 655899
Alignment:
| Q |
17 |
cactcttgacatctaactggtatacttcccacttgttttgagctgcagttgccaggataagtcttattgtatcaagacgagccaccggagcaaacaccta |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
655635 |
cactcttgacatctaactggtatacttcccacttgttttgagctgcagttgccaggataagtcttattgtatcaagacaagccaccggagcaaacacctc |
655734 |
T |
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| Q |
117 |
tgtgtagtcaatcccatattgttgcgcatatcctttggccaccaacctagctttgtacttctctacattaccatgttcgttaagcttggttttaaaaacc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
655735 |
tgtgtagtcaatcccatattgttgcgcatatcctttggccaccaacctagctttgtacttctctacattaccatgttcgttaagcttggttttaaaaacc |
655834 |
T |
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| Q |
217 |
catttaactccaatagctttgactccattcggcaaggttgtaagtctccacgtgccattcttctc |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
655835 |
catttaactccaatagctttgactccattcggcaaggttgtaagtctccacgtgccatttttctc |
655899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 238
Target Start/End: Complemental strand, 14246640 - 14246499
Alignment:
| Q |
97 |
gccaccggagcaaacacctatgtgtagtcaatcccatattgttgcgcatatcctttggccaccaacctagctttgtacttctctacattaccatgttcgt |
196 |
Q |
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||||| ||||||||||||| || |||||||| |||| |||| ||||| ||||| || |||| ||| |||||| ||||||| ||| |||||| ||| | |
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| T |
14246640 |
gccactggagcaaacacctcagtatagtcaataccatggcgttgtgcatacccttttgctaccagcctcgctttgaacttctccacagtaccatcttcat |
14246541 |
T |
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| Q |
197 |
taagcttggttttaaaaacccatttaactccaatagctttga |
238 |
Q |
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| T |
14246540 |
ttaactttgttttaaatacccacttgactccaataggtttga |
14246499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0617 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0617
Description:
Target: scaffold0617; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 238
Target Start/End: Original strand, 6786 - 6927
Alignment:
| Q |
97 |
gccaccggagcaaacacctatgtgtagtcaatcccatattgttgcgcatatcctttggccaccaacctagctttgtacttctctacattaccatgttcgt |
196 |
Q |
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||||| ||||||||||||| || |||||||| |||| |||| ||||| ||||| || |||| ||| |||||| ||||||| ||| |||||| ||| | |
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| T |
6786 |
gccactggagcaaacacctcagtatagtcaataccatggcgttgtgcatacccttttgctaccagcctcgctttgaacttctccacagtaccatcttcat |
6885 |
T |
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| Q |
197 |
taagcttggttttaaaaacccatttaactccaatagctttga |
238 |
Q |
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| T |
6886 |
ttaactttgttttaaatacccacttgactccaataggtttga |
6927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0617; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 238
Target Start/End: Original strand, 1342 - 1483
Alignment:
| Q |
97 |
gccaccggagcaaacacctatgtgtagtcaatcccatattgttgcgcatatcctttggccaccaacctagctttgtacttctctacattaccatgttcgt |
196 |
Q |
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|||||||||||||| |||| || |||||||| |||| |||| ||||| ||||| || |||| ||| ||||| ||||||| | | |||||| ||| | |
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| T |
1342 |
gccaccggagcaaatacctcagtatagtcaataccatggcgttgtgcatacccttttgctaccagcctcactttgaacttctccatagtaccatcttcat |
1441 |
T |
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| Q |
197 |
taagcttggttttaaaaacccatttaactccaatagctttga |
238 |
Q |
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| T |
1442 |
ttaactttgttttaaatacccacttgactccaataggtttga |
1483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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