View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21370_high_2 (Length: 516)
Name: NF21370_high_2
Description: NF21370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21370_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 425; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 9 - 500
Target Start/End: Complemental strand, 19905235 - 19904744
Alignment:
| Q |
9 |
acatcatcaacaaagcaaaatacataacaccgttccataaaaatagaaaaccgtgttaatttatgctcaaatcatcaactactgctacatctgtcaaaac |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19905235 |
acatcatcaacaaagcaaaatacataacaccgttccataaaaatagaaaaccgtgttaatttatgctcaaatcatcaactactgctacatctgtcaaaac |
19905136 |
T |
|
| Q |
109 |
taaacagagtatgaacttgccacatacagttagtacttattttaannnnnnncatgaaagaaatacaggaaatagaagatgcactgacagtgtaaaatag |
208 |
Q |
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| T |
19905135 |
taaacagagtatgaacttgccacatacagttagtacttattttaatttttttcatgaaagaaatacaggaaatagaagatgcactgacagtgtaaaatag |
19905036 |
T |
|
| Q |
209 |
ttttacgttgtcgtccaatcagaaatcaactatcttatcctcagtgcatcaccgttaaaagctatcaaatcaagagcacaaaagcattatctacaaaatc |
308 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19905035 |
ttttacgttgtcgtccaatcagaaataaactatcttatcctcagtgcatcaccgttaaaagctatcaaatcaagagcacaaaagcattatctacaaaatc |
19904936 |
T |
|
| Q |
309 |
aagaatcatcaagaattgcaaccagactacaatagttatcataccatcatatataagtgcatcttctattttttctaattctagcattatcatatcatca |
408 |
Q |
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| T |
19904935 |
aagaatcatcaagaattgcaaccagactacaatagttatcataccatcatatataagtgcatcttctattttttctaattctagcattatcatatcatca |
19904836 |
T |
|
| Q |
409 |
acaaagcaaaatgcctaacaccgtttcatnnnnnnnnnnnnnnccatatttatttatattcaaattgtcaactacatcccatcaacaaaact |
500 |
Q |
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| T |
19904835 |
acaaagcaaaatgcctaacaccgtttcataaaaaaataaaaaaccatatttatttatattcaaattgtcaactacatcccatcaacaaaact |
19904744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 316
Target Start/End: Complemental strand, 19904490 - 19904438
Alignment:
| Q |
264 |
taaaagctatcaaatcaagagcacaaaagcattatctacaaaatcaagaatca |
316 |
Q |
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||||||||||||||||| || |||||| ||||||||| ||||||||||||||| |
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| T |
19904490 |
taaaagctatcaaatcatgaacacaaaggcattatctgcaaaatcaagaatca |
19904438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 37899664 - 37899628
Alignment:
| Q |
178 |
aaatagaagatgcactgacagtgtaaaatagttttac |
214 |
Q |
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|||||||| |||||||| ||||||||||||||||||| |
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| T |
37899664 |
aaatagaaaatgcactgtcagtgtaaaatagttttac |
37899628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 37906175 - 37906139
Alignment:
| Q |
178 |
aaatagaagatgcactgacagtgtaaaatagttttac |
214 |
Q |
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|||||||| |||||||| ||||||||||||||||||| |
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| T |
37906175 |
aaatagaaaatgcactgtcagtgtaaaatagttttac |
37906139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 207
Target Start/End: Original strand, 32461295 - 32461324
Alignment:
| Q |
178 |
aaatagaagatgcactgacagtgtaaaata |
207 |
Q |
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| T |
32461295 |
aaatagaagatgcactgacagtgtaaaata |
32461324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 3736551 - 3736587
Alignment:
| Q |
178 |
aaatagaagatgcactgacagtgtaaaatagttttac |
214 |
Q |
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||||||||||||||||||||||||||| || |||||| |
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| T |
3736551 |
aaatagaagatgcactgacagtgtaaattaattttac |
3736587 |
T |
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