View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21370_high_3 (Length: 496)

Name: NF21370_high_3
Description: NF21370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21370_high_3
NF21370_high_3
[»] chr6 (3 HSPs)
chr6 (98-480)||(33987153-33987540)
chr6 (391-471)||(12676515-12676595)
chr6 (334-374)||(17154675-17154715)
[»] chr7 (5 HSPs)
chr7 (388-471)||(24934799-24934882)
chr7 (334-389)||(47201271-47201326)
chr7 (391-465)||(48646047-48646121)
chr7 (388-461)||(35727694-35727767)
chr7 (420-472)||(21062844-21062896)
[»] chr2 (4 HSPs)
chr2 (391-470)||(38854787-38854866)
chr2 (390-471)||(11985688-11985769)
chr2 (388-470)||(12746247-12746329)
chr2 (430-472)||(38853792-38853834)
[»] chr4 (4 HSPs)
chr4 (395-465)||(54574427-54574497)
chr4 (312-374)||(53376474-53376535)
chr4 (311-386)||(37784925-37784998)
chr4 (311-363)||(51268680-51268733)
[»] chr1 (3 HSPs)
chr1 (390-465)||(32664510-32664584)
chr1 (391-467)||(18897939-18898015)
chr1 (438-471)||(39726731-39726764)
[»] chr5 (5 HSPs)
chr5 (395-465)||(28591165-28591235)
chr5 (395-471)||(9538094-9538170)
chr5 (416-471)||(9537046-9537101)
chr5 (416-465)||(21069312-21069361)
chr5 (390-466)||(16611725-16611801)
[»] chr3 (4 HSPs)
chr3 (311-377)||(30472955-30473020)
chr3 (418-465)||(55388098-55388145)
chr3 (395-465)||(34263807-34263877)
chr3 (331-383)||(1569273-1569325)
[»] scaffold0039 (1 HSPs)
scaffold0039 (395-472)||(79075-79152)
[»] chr8 (3 HSPs)
chr8 (390-465)||(32898496-32898571)
chr8 (232-285)||(34741695-34741748)
chr8 (330-386)||(5573328-5573384)


Alignment Details
Target: chr6 (Bit Score: 344; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 98 - 480
Target Start/End: Complemental strand, 33987540 - 33987153
Alignment:
Q  98 gaacccaaagcttgtaaaataataaataaaatggaaataaaggtttattcatgttttttattttgatattggagaaagcttgttatacagaataggggtg 197  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  33987540 gaactcaaaacttgtaaaataataaataaaatggaaataaaggtttattcatgttttttattttgatattggagaaagcttgttatacataataagggtg 33987441  T
Q  198 aaatgaaacttgtgaattctatcctttacacgaattaaagagtttaaaataacaagtttgttttaaaacttgtgcattgcatattaaaa-----agtttt 292  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||     ||||||    
T  33987440 aaatgaaacttgtgaattatatcctttacacgaattaaaaagtttaaaataacaagtttgttttaaaacttgtgcattgcatattaaaataaaaagtttt 33987341  T
Q  293 aaatagtttgttttagaattgtgcattttatgttaaatatatataattttctaataattgattgttgtttttaaataaaaaattgctagttttaatttga 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33987340 aaatagtttgttttagaattgtgcattttatgttaaatatatataattttctaataattgattgttgtttttaaataaaaaattgctagttttaatttga 33987241  T
Q  393 gtaaatagtcaatttgattccttactctgcaactcgctgtcatagaggtctttgacttaggattaaatacaaagtagtccatgaatat 480  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33987240 gtaaatagtcaatttgattccttactctgcaactcgctgtcatagaggtctttgacttaggattaaatacaaagtagtccatgaatat 33987153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 471
Target Start/End: Complemental strand, 12676595 - 12676515
Alignment:
Q  391 gagtaaatagtcaatttgattccttactctgcaactcgctgtcatagaggtctttgacttaggattaaatacaaagtagtc 471  Q
    ||||||||||||| ||||||  || |||||||| |||| ||||| |  ||||| || || |||||||||||||||||||||    
T  12676595 gagtaaatagtcactttgatatctgactctgcacctcgttgtcacaatggtctctgtctcaggattaaatacaaagtagtc 12676515  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 334 - 374
Target Start/End: Complemental strand, 17154715 - 17154675
Alignment:
Q  334 tataattttctaataattgattgttgtttttaaataaaaaa 374  Q
    ||||||||| |||||||||||| |||||||| |||||||||    
T  17154715 tataattttttaataattgattattgtttttcaataaaaaa 17154675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 388 - 471
Target Start/End: Original strand, 24934799 - 24934882
Alignment:
Q  388 tttgagtaaatagtcaatttgattccttactctgcaactcgctgtcatagaggtctttgacttaggattaaatacaaagtagtc 471  Q
    ||||||||||| |||| |||| | ||| ||||||||  ||||||||| | |||||| ||||||||||||||||||||| |||||    
T  24934799 tttgagtaaatggtcactttggtccctaactctgcatatcgctgtcacaaaggtctctgacttaggattaaatacaaaatagtc 24934882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 334 - 389
Target Start/End: Complemental strand, 47201326 - 47201271
Alignment:
Q  334 tataattttctaataattgattgttgtttttaaataaaaaattgctagttttaatt 389  Q
    ||||| ||| |||||||||||||||||||||||  |||||||||||| ||||||||    
T  47201326 tataactttttaataattgattgttgtttttaataaaaaaattgctacttttaatt 47201271  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 391 - 465
Target Start/End: Original strand, 48646047 - 48646121
Alignment:
Q  391 gagtaaatagtcaatttgattccttactctgcaactcgctgtcatagaggtctttgacttaggattaaatacaaa 465  Q
    ||||||||||||| |||| | ||| ||| |||| |||||||||| | |||||  ||||| |||||||||||||||    
T  48646047 gagtaaatagtcactttggtccctgactatgcacctcgctgtcacataggtccctgactcaggattaaatacaaa 48646121  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 461
Target Start/End: Original strand, 35727694 - 35727767
Alignment:
Q  388 tttgagtaaatagtcaatttgattccttactctgcaactcgctgtcatagaggtctttgacttaggattaaata 461  Q
    |||||| ||| ||||| |||||| ||| |||||||| |||||||||| | |||||  ||||| |||||||||||    
T  35727694 tttgagcaaacagtcactttgatccctgactctgcacctcgctgtcacataggtccctgactcaggattaaata 35727767  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 472
Target Start/End: Original strand, 21062844 - 21062896
Alignment:
Q  420 tgcaactcgctgtcatagaggtctttgacttaggattaaatacaaagtagtcc 472  Q
    |||| |||||||||||| ||||| |||||| ||||||||||||| || |||||    
T  21062844 tgcacctcgctgtcataaaggtccttgactcaggattaaatacatagaagtcc 21062896  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 391 - 470
Target Start/End: Original strand, 38854787 - 38854866
Alignment:
Q  391 gagtaaatagtcaatttgattccttactctgcaactcgctgtcatagaggtctttgacttaggattaaatacaaagtagt 470  Q
    ||||||||||||| |||| | ||| ||||| ||  ||| ||||||| |||||||||||| ||||||||||||||||||||    
T  38854787 gagtaaatagtcactttggtccctgactctacacttcgttgtcataaaggtctttgactcaggattaaatacaaagtagt 38854866  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 390 - 471
Target Start/End: Original strand, 11985688 - 11985769
Alignment:
Q  390 tgagtaaatagtcaatttgattccttactctgcaactcgctgtcatagaggtctttgacttaggattaaatacaaagtagtc 471  Q
    ||||||||| |||  |||||| ||| ||||  || |||||||| ||| |||||| ||||| |||||||||||||||||||||    
T  11985688 tgagtaaattgtcgttttgatccctgactccacacctcgctgttataaaggtctctgactcaggattaaatacaaagtagtc 11985769  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 470
Target Start/End: Complemental strand, 12746329 - 12746247
Alignment:
Q  388 tttgagtaaatagtcaatttgattccttactctgcaactcgctgtcatagaggtctttgacttaggattaaatacaaagtagt 470  Q
    ||||||||||| |||| |||| ||| | |||||||| ||||| ||| || ||||   ||||| ||||||||||||||||||||    
T  12746329 tttgagtaaatggtcactttggttcttgactctgcacctcgcagtcttaaaggttcctgactcaggattaaatacaaagtagt 12746247  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 430 - 472
Target Start/End: Original strand, 38853792 - 38853834
Alignment:
Q  430 tgtcatagaggtctttgacttaggattaaatacaaagtagtcc 472  Q
    ||||||| |||||| ||||| ||||||||||||||||||||||    
T  38853792 tgtcataaaggtctctgactcaggattaaatacaaagtagtcc 38853834  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 395 - 465
Target Start/End: Original strand, 54574427 - 54574497
Alignment:
Q  395 aaatagtcaatttgattccttactctgcaactcgctgtcatagaggtctttgacttaggattaaatacaaa 465  Q
    ||||||||| |||| ||||| |||||||| |||||||||| | |||||| ||||| |||||||||||||||    
T  54574427 aaatagtcattttgcttcctcactctgcatctcgctgtcacataggtctctgactcaggattaaatacaaa 54574497  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 374
Target Start/End: Original strand, 53376474 - 53376535
Alignment:
Q  312 tgtgcattttatgttaaatatatataattttctaataattgattgttgtttttaaataaaaaa 374  Q
    |||||||||||| |||||| ||||||| ||| |||||| |||||||||||||| |||||||||    
T  53376474 tgtgcattttatattaaat-tatataactttttaataaatgattgttgtttttcaataaaaaa 53376535  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 311 - 386
Target Start/End: Original strand, 37784925 - 37784998
Alignment:
Q  311 ttgtgcattttatgttaaatatatataattttctaataattgattgttgtttttaaataaaaaattgctagtttta 386  Q
    ||||||||||||||||||  |||| ||| ||| |||||| ||||| |||||||| |||||||| |||||| |||||    
T  37784925 ttgtgcattttatgttaa--atatgtaactttttaataaatgattattgtttttcaataaaaagttgctactttta 37784998  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 363
Target Start/End: Original strand, 51268680 - 51268733
Alignment:
Q  311 ttgtgcattttatgttaaatata-tataattttctaataattgattgttgtttt 363  Q
    ||||||||||||| | ||||||| |||||||||||||||| | |||||||||||    
T  51268680 ttgtgcattttatataaaatatagtataattttctaataaataattgttgtttt 51268733  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 390 - 465
Target Start/End: Original strand, 32664510 - 32664584
Alignment:
Q  390 tgagtaaatagtcaatttgattccttactctgcaactcgctgtcatagaggtctttgacttaggattaaatacaaa 465  Q
    |||| ||||| |||||||| ||||| |||||||| |||||||| ||| ||||||| |||| |||||||||||||||    
T  32664510 tgagcaaatactcaatttggttcctcactctgcacctcgctgttatataggtctt-gactcaggattaaatacaaa 32664584  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 467
Target Start/End: Complemental strand, 18898015 - 18897939
Alignment:
Q  391 gagtaaatagtcaatttgattccttactctgcaactcgctgtcatagaggtctttgacttaggattaaatacaaagt 467  Q
    |||||||| |||| |||||||| | ||||||||||||  ||||| | |||||| ||||| ||||||||||| |||||    
T  18898015 gagtaaatggtcactttgattcttgactctgcaactcattgtcacaaaggtctctgactcaggattaaatataaagt 18897939  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 471
Target Start/End: Complemental strand, 39726764 - 39726731
Alignment:
Q  438 aggtctttgacttaggattaaatacaaagtagtc 471  Q
    |||||||||||||||||||||||| |||||||||    
T  39726764 aggtctttgacttaggattaaatataaagtagtc 39726731  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 395 - 465
Target Start/End: Complemental strand, 28591235 - 28591165
Alignment:
Q  395 aaatagtcaatttgattccttactctgcaactcgctgtcatagaggtctttgacttaggattaaatacaaa 465  Q
    ||||||||| |||||| ||| |||||||| |||||||||| | |||||  ||||| |||||||||||||||    
T  28591235 aaatagtcactttgatccctgactctgcacctcgctgtcacataggtccctgactcaggattaaatacaaa 28591165  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 471
Target Start/End: Complemental strand, 9538170 - 9538094
Alignment:
Q  395 aaatagtcaatttgattccttactctgcaactcgctgtcatagaggtctttgacttaggattaaatacaaagtagtc 471  Q
    ||||||||| |||| | ||| |||||||| |||| ||||||| |||||  ||||| |||||||||||||||| ||||    
T  9538170 aaatagtcactttggtccctgactctgcatctcgttgtcatataggtccctgactcaggattaaatacaaagaagtc 9538094  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 471
Target Start/End: Original strand, 9537046 - 9537101
Alignment:
Q  416 actctgcaactcgctgtcatagaggtctttgacttaggattaaatacaaagtagtc 471  Q
    |||||||| |||||||||| | |||||| |||||||| ||||||||||||| ||||    
T  9537046 actctgcacctcgctgtcacataggtctctgacttagaattaaatacaaagaagtc 9537101  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 465
Target Start/End: Original strand, 21069312 - 21069361
Alignment:
Q  416 actctgcaactcgctgtcatagaggtctttgacttaggattaaatacaaa 465  Q
    |||||||| |||| ||||| |||||||| ||||| |||||||||||||||    
T  21069312 actctgcacctcgttgtcacagaggtctctgactcaggattaaatacaaa 21069361  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 390 - 466
Target Start/End: Original strand, 16611725 - 16611801
Alignment:
Q  390 tgagtaaatagtcaatttgattccttactctgcaactcgctgtcatagaggtctttgacttaggattaaatacaaag 466  Q
    |||| |||| |||| ||| |||| | ||||| || |||||||||| | |||||| ||||| ||||||||||||||||    
T  16611725 tgagcaaatggtcactttaattcttgactctacacctcgctgtcacataggtctctgactcaggattaaatacaaag 16611801  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 377
Target Start/End: Original strand, 30472955 - 30473020
Alignment:
Q  311 ttgtgcattttatgttaaatatatataattttctaataattgattgttgtttttaaataaaaaattg 377  Q
    ||||| ||||||| |||||| |||||  |||| |||||| |||||||||||||||||||||||||||    
T  30472955 ttgtgtattttatattaaatgtatatcttttt-taataaatgattgttgtttttaaataaaaaattg 30473020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 465
Target Start/End: Original strand, 55388098 - 55388145
Alignment:
Q  418 tctgcaactcgctgtcatagaggtctttgacttaggattaaatacaaa 465  Q
    |||||| |||||||||||| |||||| ||||| |||||||||||||||    
T  55388098 tctgcagctcgctgtcatataggtctctgactcaggattaaatacaaa 55388145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 395 - 465
Target Start/End: Original strand, 34263807 - 34263877
Alignment:
Q  395 aaatagtcaatttgattccttactctgcaactcgctgtcatagaggtctttgacttaggattaaatacaaa 465  Q
    ||||||||| ||||   ||| |||||||| |||||||||| ||||||| |||| | |||||||||||||||    
T  34263807 aaatagtcactttggcccctgactctgcacctcgctgtcacagaggtccttgattcaggattaaatacaaa 34263877  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 331 - 383
Target Start/End: Original strand, 1569273 - 1569325
Alignment:
Q  331 atatataattttctaataattgattgttgtttttaaataaaaaattgctagtt 383  Q
    |||| ||| |||||||||| | |||||||||||| ||||||||||| ||||||    
T  1569273 atatgtaactttctaataaattattgttgttttttaataaaaaattactagtt 1569325  T

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Target: scaffold0039 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 395 - 472
Target Start/End: Original strand, 79075 - 79152
Alignment:
Q  395 aaatagtcaatttgattccttactctgcaactcgctgtcatagaggtctttgacttaggattaaatacaaagtagtcc 472  Q
    |||||||||||||  ||||| |||||||| |||||||||| | ||||| |||||| | ||||||||| |||| |||||    
T  79075 aaatagtcaatttagttcctgactctgcacctcgctgtcacataggtccttgactcatgattaaataaaaagaagtcc 79152  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 465
Target Start/End: Complemental strand, 32898571 - 32898496
Alignment:
Q  390 tgagtaaatagtcaatttgattccttactctgcaactcgctgtcatagaggtctttgacttaggattaaatacaaa 465  Q
    |||| ||||||||| |||  | ||| |||||||||||| |||||| | |||||  |||||||||||||||||||||    
T  32898571 tgagcaaatagtcactttagtccctgactctgcaactcactgtcacataggtccctgacttaggattaaatacaaa 32898496  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 285
Target Start/End: Original strand, 34741695 - 34741748
Alignment:
Q  232 ttaaagagtttaaaataacaagtttgttttaaaacttgtgcattgcatattaaa 285  Q
    ||||| |||||||||||| |||||||| ||| ||||||||||||  ||||||||    
T  34741695 ttaaaaagtttaaaataataagtttgtattagaacttgtgcattttatattaaa 34741748  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 330 - 386
Target Start/End: Complemental strand, 5573384 - 5573328
Alignment:
Q  330 tatatataattttctaataattgattgttgtttttaaataaaaaattgctagtttta 386  Q
    ||||||||| ||| |||||| |||||||||||||| |||||||| ||| || |||||    
T  5573384 tatatataactttttaataaatgattgttgtttttcaataaaaacttgttattttta 5573328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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