View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21370_high_7 (Length: 373)
Name: NF21370_high_7
Description: NF21370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21370_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 8388545 - 8388908
Alignment:
| Q |
1 |
catatataacccatagcataaatcagatttaattgtatatatttatgaacattttataagtggatgctgtattgattatgctcatccatccatctatgat |
100 |
Q |
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| T |
8388545 |
catatataacccatagcataaatcagatttaattgtatatatttatgaacattttataagtggatgctgtattgattatgctcatccatccatctatgat |
8388644 |
T |
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| Q |
101 |
ctatctattacactagtagagcactaaacccttttgagacacattactagttctggtgcttcaatttcccacataactgataccaatctggggaagtaca |
200 |
Q |
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| T |
8388645 |
ctatctattacactagtagagcactaaacccttttgagacacattactagttctggtgcttcaatttcccacataactgataccaatctggggaagtaca |
8388744 |
T |
|
| Q |
201 |
cgccgttttaggttgttatatgtctttctattattcttgtcaagtgagtcctaatgatattctgattccttctgtcctagtcgtatttactttagttact |
300 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8388745 |
cgccattttaggttgttatatgtctttctattattcttgtcaagtgagtcctaatgatattctgattccttctgtcctagtcgtatttactttagttact |
8388844 |
T |
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| Q |
301 |
tttcttgtgttggattttgtctttccagtgatcttcataatattattatgacgctatttcatct |
364 |
Q |
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| T |
8388845 |
tttcttgtgttggattttgtctttccagtgatcttcaaaatattattatgacgctatttcatct |
8388908 |
T |
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