View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21370_low_1 (Length: 700)
Name: NF21370_low_1
Description: NF21370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21370_low_1 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 405 - 688
Target Start/End: Complemental strand, 24084459 - 24084175
Alignment:
| Q |
405 |
gtgtaggcatcacatattgttgtcaagaaagtgtgttcatatagcattacacatgttctattgtaggtaattgttctacgagcatgtcagttttgctcaa |
504 |
Q |
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| T |
24084459 |
gtgtaggcatcacatattgttgtcaagaaagtgtgttcatatagcattacacgtgttctattgtaggtaattgttcaacgagcctgtcagttttgctcaa |
24084360 |
T |
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| Q |
505 |
atgccctttgatttatcgggtcgtaattcccgattgaataaaaatcatcaaatcttaactcccaatcgactt-ttttacattagatcgtaactcacggta |
603 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
24084359 |
atgccctttgatttatcgggtcgtaattcccgattgaataaaaatcatcaaatcttaactcccaatcgactttttttacattagatcgtaactcacggta |
24084260 |
T |
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| Q |
604 |
gacttattttagggattgagcaatccaaagggcgagtcttctctgccgtaaatgttgggaaaattgctctttagacacctatgct |
688 |
Q |
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| T |
24084259 |
gacttattttagggattgagcaatccaaagggtgagtcttctctgcagtaaatgttgggaaaattgctctttagacacctatgct |
24084175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 20 - 321
Target Start/End: Complemental strand, 24084840 - 24084544
Alignment:
| Q |
20 |
accacaaaacaaagaaatgtacgatgttaatcacttttggaaatataaatttcagtaaccacttttattacttcgttaacnnnnnnnnnnnnnnnntgca |
119 |
Q |
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| T |
24084840 |
accacaaaacaaagaaatgtacgatgttaatcacttttggaaatataaaattcagtaaccacttttattacttcgttaacaaaaaaaaaaa-----tgca |
24084746 |
T |
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| Q |
120 |
aggtgttaacaaattattttacgtagtttaaaaacaattgctacttatatttatttaaaataagtggttaatgttatgtatttttgtggttaatgaagta |
219 |
Q |
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| T |
24084745 |
aggtgttcacaaattattttacgtagtttaaaaacaattgctacttatatttatttaaaataagtggttaatgttatgtatttttatggttaatgaagta |
24084646 |
T |
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| Q |
220 |
gtcaaattggttaattaaatttatgtcnnnnnnntgattaacaaagttgtcaaattgattgacacaactcagattttgtgttataaaaatcatactctat |
319 |
Q |
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| T |
24084645 |
gtcaaattggttaattaaatttatgtcaaaaaaataattaacaaagttgtcaaattgattgacacagctcagattttgtgttataaaaatcatactctat |
24084546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 168 - 219
Target Start/End: Original strand, 34000712 - 34000763
Alignment:
| Q |
168 |
atttatttaaaataagtggttaatgttatgtatttttgtggttaatgaagta |
219 |
Q |
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| T |
34000712 |
atttatttaaaataaatggttaatgttttgcatttttgtggttaataaagta |
34000763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 165 - 220
Target Start/End: Original strand, 9180525 - 9180580
Alignment:
| Q |
165 |
tatatttatttaaaataagtggttaatgttatgtatttttgtggttaatgaagtag |
220 |
Q |
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| T |
9180525 |
tatatttatgtaaaatacgtggttaatattttctatttttgtggttaatgaagtag |
9180580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 244
Target Start/End: Complemental strand, 22807907 - 22807868
Alignment:
| Q |
205 |
gtggttaatgaagtagtcaaattggttaattaaatttatg |
244 |
Q |
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| T |
22807907 |
gtggttaatgaagtagtcaaagtggttaataaaatttatg |
22807868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 57020 - 57072
Alignment:
| Q |
161 |
tacttatatttatttaaaataagtggttaatgttatgtatttttgtggttaat |
213 |
Q |
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| T |
57020 |
tacttatatttatgtaaaataatttgttaatgttttgcatttttgtggttaat |
57072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 168 - 234
Target Start/End: Complemental strand, 41915095 - 41915029
Alignment:
| Q |
168 |
atttatttaaaataagtggttaatgttatgtatttttgtggttaatgaagtagtcaaattggttaat |
234 |
Q |
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| T |
41915095 |
atttatgtaaaataagtgtttaatgtgaaataattttgtggttaatgaagtaatcaaaatgtttaat |
41915029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 43356450 - 43356393
Alignment:
| Q |
168 |
atttatttaaaataagtggttaatgttatgtatttttgtggttaatgaagtagtcaaa |
225 |
Q |
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|||||| |||||||||||||||||| | || ||||||||| | ||| ||||||||||| |
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| T |
43356450 |
atttatgtaaaataagtggttaatgctttgcatttttgtgatcaataaagtagtcaaa |
43356393 |
T |
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