View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21370_low_4 (Length: 450)

Name: NF21370_low_4
Description: NF21370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21370_low_4
NF21370_low_4
[»] chr3 (5 HSPs)
chr3 (44-295)||(32249243-32249497)
chr3 (294-432)||(32248885-32249023)
chr3 (294-432)||(38209214-38209352)
chr3 (294-395)||(32193313-32193414)
chr3 (10-217)||(32192817-32193023)
[»] chr7 (4 HSPs)
chr7 (44-293)||(8843785-8844037)
chr7 (294-425)||(8843432-8843563)
chr7 (44-266)||(8823832-8824058)
chr7 (10-295)||(8807895-8808178)
[»] chr1 (2 HSPs)
chr1 (44-295)||(36375967-36376221)
chr1 (294-432)||(36376441-36376579)
[»] chr5 (1 HSPs)
chr5 (332-432)||(35958383-35958483)


Alignment Details
Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 44 - 295
Target Start/End: Complemental strand, 32249497 - 32249243
Alignment:
Q  44 aatttgatttgagaaaa-gttccaaagtaagatttgttctgaggctaattgcacgtgtggtgaaaaatgaaaaggttcttatcttttc-cacaaccttgc 141  Q
    ||||||||||||||||| |||||||||||||||||||| |||| |||||  |||| || ||||||||||||||||||||||||||||  |||||||||||    
T  32249497 aatttgatttgagaaaaagttccaaagtaagatttgttttgagcctaatctcacgagtagtgaaaaatgaaaaggttcttatcttttgtcacaaccttgc 32249398  T
Q  142 acctgtgaggtttttattagagttatttgaaaagtattttcattggcaaaatggtgaagagattctgttactaa-ctgcgaactagatttgtttgaaaga 240  Q
    ||||||||| || ||| ||||||||||||| || |||||||| |||||||||||| |||||||| || |||||| | | || ||||| ||||||||||||    
T  32249397 acctgtgagattcttaatagagttatttgagaaatattttcagtggcaaaatggtaaagagattatggtactaaccggtgagctagacttgtttgaaaga 32249298  T
Q  241 ggggaagtgatagataaatttgaagaccattgcagcagttcgaagatacttcttg 295  Q
    ||| |||||||||||||||||||||| ||  ||||| |||| |||||||||||||    
T  32249297 gggaaagtgatagataaatttgaagatcaaagcagcggttcaaagatacttcttg 32249243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 294 - 432
Target Start/End: Complemental strand, 32249023 - 32248885
Alignment:
Q  294 tgatttttagtgaggagtttggtgatgatccttctaaatggcaagctgagaagatttaagataatatacttagggagatggttgaagaggataagtctaa 393  Q
    |||||||||||||||||||||  || |||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  32249023 tgatttttagtgaggagtttgtggaagatccttctaaatggcaagcagagaagattgaagatgatatacttagggagatggttgaagaggataagtctaa 32248924  T
Q  394 agctattcatatgactatgaagaatgaaaaggcttcaac 432  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  32248923 agctattcacatgattatgaagaatgaaaaggcttcaac 32248885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 294 - 432
Target Start/End: Original strand, 38209214 - 38209352
Alignment:
Q  294 tgatttttagtgaggagtttggtgatgatccttctaaatggcaagctgagaagatttaagataatatacttagggagatggttgaagaggataagtctaa 393  Q
    |||||||||||| |||| ||| | | ||||||||||||| | |||||||||||| | ||||| ||||||||||||| |||||||||||| ||||||||||    
T  38209214 tgatttttagtgcggaggttgttaaggatccttctaaatagaaagctgagaagaatgaagatgatatacttagggatatggttgaagagaataagtctaa 38209313  T
Q  394 agctattcatatgactatgaagaatgaaaaggcttcaac 432  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  38209314 agctattcatatgattatgaagaatgaaaaggcttcaac 38209352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 294 - 395
Target Start/End: Original strand, 32193313 - 32193414
Alignment:
Q  294 tgatttttagtgaggagtttggtgatgatccttctaaatggcaagctgagaagatttaagataatatacttagggagatggttgaagaggataagtctaa 393  Q
    |||||||||||||||||||||  || |||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||    
T  32193313 tgatttttagtgaggagtttgtggaagatccttctaaatggcaagctgagaagattgaagattatatacttagggagatagttgaagaggataagtctaa 32193412  T
Q  394 ag 395  Q
    ||    
T  32193413 ag 32193414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 10 - 217
Target Start/End: Original strand, 32192817 - 32193023
Alignment:
Q  10 agaagaattgaagagactggaaggatgcaaatttaatttgatttgagaaaagttccaaagtaagatttgttctgaggctaattgcacgtgtggtgaaaaa 109  Q
    |||| ||||||||||||| |||||| | |||||| | ||||     |||| |||| ||| |||| |||||| |||| |||||  |||||||   ||||||    
T  32192817 agaaaaattgaagagactagaaggaagaaaattttacttgag----gaaaggttctaaaataagttttgtt-tgagcctaatctcacgtgtaacgaaaaa 32192911  T
Q  110 tgaaaaggttcttatcttttc-cacaaccttgcacctgtgaggtttttattaga---gttatttgaaaagtattttcattggcaaaatggtgaagagatt 205  Q
    ||||||| |||||| |||||  | ||||||||||||||||||||||||  ||||   |||||||| |||||| ||||| |||| ||| ||| ||||||||    
T  32192912 tgaaaagattcttagcttttgtctcaaccttgcacctgtgaggtttttgatagatcagttatttgcaaagtactttcagtggcgaaagggtaaagagatt 32193011  T
Q  206 ctgttactaact 217  Q
     |||||||||||    
T  32193012 ttgttactaact 32193023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 3e-52; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 44 - 293
Target Start/End: Complemental strand, 8844037 - 8843785
Alignment:
Q  44 aatttgatttgagaaaag-ttccaaagtaagatttgttctgaggctaattgcacgtgtggtgaaaaatgaaaaggttcttatctttt-ccacaaccttgc 141  Q
    |||||||||| ||||||| ||||||| |||||||||||||||| |||||  ||||||| ||||||||||||||||||||||||||||  ||| |||||||    
T  8844037 aatttgatttaagaaaaggttccaaaataagatttgttctgagcctaatctcacgtgtagtgaaaaatgaaaaggttcttatcttttgtcactaccttgc 8843938  T
Q  142 acctgtgaggtttttattagagttatttgaaaagtattttcattggcaaaatggtgaagagattctgttactaact-gcgaactagatttgtttgaaaga 240  Q
    ||||||||| |||||  ||||||| ||||| || || ||||| |||||||||||  ||||| ||||| |||| ||| | || ||||||||||||||||||    
T  8843937 acctgtgagatttttcatagagttgtttgagaaatactttcaatggcaaaatggaaaagaggttctgatacttactggtgatctagatttgtttgaaaga 8843838  T
Q  241 ggggaagtgatagataaatttgaagaccattgcagcagttcgaagatacttct 293  Q
    ||  ||||||| ||||| |||||||| | | ||||| ||||||||||||||||    
T  8843837 ggaaaagtgattgataagtttgaagatcctcgcagcggttcgaagatacttct 8843785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 294 - 425
Target Start/End: Complemental strand, 8843563 - 8843432
Alignment:
Q  294 tgatttttagtgaggagtttggtgatgatccttctaaatggcaagctgagaagatttaagataatatacttagggagatggttgaagaggataagtctaa 393  Q
    |||||||||||||||||||||  || ||||| |||||||||||||| || |||||| ||||| | |||||||||||||||||||||||||||||||||||    
T  8843563 tgatttttagtgaggagtttgtggaagatccatctaaatggcaagcagaaaagattgaagatgaaatacttagggagatggttgaagaggataagtctaa 8843464  T
Q  394 agctattcatatgactatgaagaatgaaaagg 425  Q
    |||||||||||||| |||||||||||||||||    
T  8843463 agctattcatatgattatgaagaatgaaaagg 8843432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 44 - 266
Target Start/End: Original strand, 8823832 - 8824058
Alignment:
Q  44 aatttgatttgagaaaag-ttccaaagtaagatttgttctgaggctaattgcacgtgtggtgaaaaatgaaaaggttcttatctttt-ccacaaccttgc 141  Q
    |||||||||| || |||| ||||||| |||||||| || |||| |||||  ||| ||| ||||||||||||||||||||||||||||  ||| || ||||    
T  8823832 aatttgatttaagtaaaggttccaaaataagattttttatgagcctaatctcacatgtagtgaaaaatgaaaaggttcttatcttttgtcactacgttgc 8823931  T
Q  142 acctgtgaggtttttattagagttatttgaaaagtattttc-attggcaaaatggtgaagagattctgttactaact-gcgaactagatttgtttgaaag 239  Q
    ||||||||| |||||  ||||||||||||| ||||| |||| || || |||||||  ||||| || || |||||||| | || |||||||||||||||||    
T  8823932 acctgtgagattttttatagagttatttgagaagtactttcaatgggaaaaatggaaaagaggttttgctactaactagtgatctagatttgtttgaaag 8824031  T
Q  240 aggggaagtgatagataaatttgaaga 266  Q
    |||| || | || ||||| ||||||||    
T  8824032 agggaaaataattgataagtttgaaga 8824058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 10 - 295
Target Start/End: Complemental strand, 8808178 - 8807895
Alignment:
Q  10 agaagaattgaagagactggaaggatgcaaatttaatttgatttgagaaaagttccaaagtaagatttgttctgaggctaattgcacgtgtggtgaaaaa 109  Q
    ||||||||||||||| || ||| ||  ||||||||||||||   || |||| ||||||| | | ||||| |||||| |||||  ||| ||| ||||||||    
T  8808178 agaagaattgaagaggctagaacgaatcaaatttaatttga---ga-aaaatttccaaaattaaatttggtctgagcctaatctcacctgtagtgaaaaa 8808083  T
Q  110 tgaaaaggttcttatctttt-ccacaaccttgcacctgtgaggtttttattagagttatttgaaaagtattttcattggcaaaatggtgaagagattctg 208  Q
    |||| |||||||||||||||   || |||||||||||  ||  |||||| ||||||||||||| ||||| ||||| ||  |||||||  ||||| ||||     
T  8808082 tgaagaggttcttatcttttataactaccttgcaccttagaaatttttaatagagttatttgagaagtactttcaatgaaaaaatggaaaagaggttctt 8807983  T
Q  209 ttactaactgcgaa-ctagatttgtttgaaagaggggaagtgatagataaatttgaagaccattgcagcagttcgaagatacttcttg 295  Q
     |||||||||  || ||||||||||||||||||||  ||||||| ||||| ||||||||   | ||||  |||| |||||||||||||    
T  8807982 ctactaactggtaatctagatttgtttgaaagaggaaaagtgattgataagtttgaagattctcgcagtggttcaaagatacttcttg 8807895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 9e-37; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 44 - 295
Target Start/End: Original strand, 36375967 - 36376221
Alignment:
Q  44 aatttgatttgagaaaag-ttccaaagtaagatttgttctgaggctaattgcacgtgtggtgaaaaatgaaaaggttcttatcttttc-cacaaccttgc 141  Q
    |||||| ||||||||||| ||||||||||||||||||| |||| |||||  |||||||| ||| ||| ||||||||||| ||||| |  |||||||||||    
T  36375967 aatttgctttgagaaaaggttccaaagtaagatttgttttgagcctaatctcacgtgtgatgagaaaggaaaaggttctcatcttctgtcacaaccttgc 36376066  T
Q  142 acctgtgaggtttttattagagttatttgaaaagtattttcattggcaaaatggtgaagagattctgttactaact-gcgaactagatttgtttgaaaga 240  Q
    ||| |||||||||||  ||||||||||||| ||  ||||||  ||| |||||||| |||||||||||  ||||||| | |||| ||| || |||||||||    
T  36376067 accagtgaggtttttgatagagttatttgagaatcattttcggtggaaaaatggtaaagagattctgcaactaactggtgaacaagacttctttgaaaga 36376166  T
Q  241 ggggaagtgatagataaatttgaagaccattgcagcagttcgaagatacttcttg 295  Q
      | | |||||||||||||||||||| | |||  ||  ||| |||||||||||||    
T  36376167 acgaacgtgatagataaatttgaagatcgttgtggcgattcaaagatacttcttg 36376221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 294 - 432
Target Start/End: Original strand, 36376441 - 36376579
Alignment:
Q  294 tgatttttagtgaggagtttggtgatgatccttctaaatggcaagctgagaagatttaagataatatacttagggagatggttgaagaggataagtctaa 393  Q
    ||||||| ||||||||| ||| ||| |||||||| ||||||||||||||||| ||| ||||| | ||||| || ||||||||||||||||| ||||| ||    
T  36376441 tgattttcagtgaggagcttgttgaagatccttccaaatggcaagctgagaaaattgaagatgacatactcagagagatggttgaagaggacaagtccaa 36376540  T
Q  394 agctattcatatgactatgaagaatgaaaaggcttcaac 432  Q
    |  |||||||||||  ||||||||||||||| |||||||    
T  36376541 acttattcatatgatcatgaagaatgaaaagacttcaac 36376579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 332 - 432
Target Start/End: Complemental strand, 35958483 - 35958383
Alignment:
Q  332 tggcaagctgagaagatttaagataatatacttagggagatggttgaagaggataagtctaaagctattcatatgactatgaagaatgaaaaggcttcaa 431  Q
    |||||||||||||||||| ||||| |||| || ||||| ||||| || ||||||||||||||| |  | |||||||  ||||||||||||||||||||||    
T  35958483 tggcaagctgagaagattgaagatgatattctaagggaaatggtcgaggaggataagtctaaatcattccatatgatcatgaagaatgaaaaggcttcaa 35958384  T
Q  432 c 432  Q
    |    
T  35958383 c 35958383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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