View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21370_low_5 (Length: 433)

Name: NF21370_low_5
Description: NF21370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21370_low_5
NF21370_low_5
[»] chr3 (32 HSPs)
chr3 (6-300)||(32773140-32773440)
chr3 (299-357)||(3283374-3283432)
chr3 (294-357)||(54160388-54160451)
chr3 (303-357)||(50090936-50090990)
chr3 (305-357)||(42092807-42092859)
chr3 (310-357)||(6125770-6125817)
chr3 (294-357)||(21395958-21396021)
chr3 (294-357)||(35180573-35180636)
chr3 (307-357)||(13700360-13700410)
chr3 (299-357)||(35711930-35711988)
chr3 (299-357)||(54253897-54253955)
chr3 (302-354)||(34673573-34673625)
chr3 (306-357)||(5232726-5232777)
chr3 (294-357)||(9665309-9665372)
chr3 (309-356)||(27027332-27027379)
chr3 (299-349)||(8351060-8351110)
chr3 (304-354)||(39328415-39328465)
chr3 (299-356)||(8674537-8674594)
chr3 (304-357)||(36418713-36418766)
chr3 (299-356)||(45408247-45408304)
chr3 (319-356)||(46969958-46969995)
chr3 (305-357)||(39867178-39867230)
chr3 (305-357)||(54411900-54411952)
chr3 (299-357)||(37702672-37702730)
chr3 (310-356)||(46770495-46770541)
chr3 (299-356)||(52945571-52945627)
chr3 (294-346)||(20513128-20513180)
chr3 (299-334)||(4125996-4126031)
chr3 (306-357)||(19855464-19855515)
chr3 (320-357)||(41355378-41355415)
chr3 (302-338)||(34673449-34673485)
chr3 (302-338)||(34673511-34673547)
[»] chr7 (29 HSPs)
chr7 (299-355)||(21993471-21993527)
chr7 (294-357)||(45099970-45100033)
chr7 (299-357)||(35983106-35983164)
chr7 (299-357)||(36004518-36004576)
chr7 (294-357)||(3203384-3203447)
chr7 (305-355)||(3961178-3961228)
chr7 (304-356)||(35221773-35221825)
chr7 (305-357)||(46003837-46003889)
chr7 (306-357)||(9522568-9522619)
chr7 (294-357)||(31953158-31953221)
chr7 (299-357)||(5995151-5995209)
chr7 (312-357)||(32392287-32392332)
chr7 (304-357)||(43077596-43077649)
chr7 (305-357)||(3875108-3875160)
chr7 (315-355)||(20009233-20009273)
chr7 (305-357)||(41378475-41378527)
chr7 (305-356)||(27946927-27946978)
chr7 (304-357)||(42373561-42373614)
chr7 (305-349)||(12362936-12362980)
chr7 (305-357)||(48227335-48227387)
chr7 (310-357)||(27130996-27131043)
chr7 (299-354)||(41037127-41037182)
chr7 (310-356)||(14313952-14313998)
chr7 (319-357)||(48625002-48625040)
chr7 (310-355)||(7596926-7596971)
chr7 (310-355)||(20417981-20418026)
chr7 (299-356)||(28059323-28059379)
chr7 (310-338)||(24251909-24251937)
chr7 (319-355)||(28333819-28333855)
[»] chr2 (24 HSPs)
chr2 (294-357)||(1750009-1750072)
chr2 (299-355)||(10664787-10664843)
chr2 (305-357)||(29471736-29471788)
chr2 (305-356)||(18924641-18924692)
chr2 (294-357)||(39089194-39089257)
chr2 (310-356)||(4206430-4206476)
chr2 (310-356)||(39961645-39961691)
chr2 (310-353)||(27175517-27175560)
chr2 (299-357)||(9548306-9548364)
chr2 (299-356)||(12725813-12725870)
chr2 (308-357)||(16719832-16719881)
chr2 (304-357)||(33740234-33740287)
chr2 (319-355)||(34450317-34450353)
chr2 (312-356)||(39435040-39435084)
chr2 (294-357)||(25810496-25810559)
chr2 (310-357)||(25880575-25880622)
chr2 (319-357)||(10862576-10862614)
chr2 (319-357)||(29511892-29511930)
chr2 (294-338)||(21950658-21950702)
chr2 (319-356)||(6231221-6231258)
chr2 (320-357)||(14747413-14747450)
chr2 (319-356)||(36779860-36779897)
chr2 (325-357)||(27097033-27097065)
chr2 (307-355)||(44539948-44539996)
[»] chr8 (28 HSPs)
chr8 (299-357)||(26912421-26912479)
chr8 (294-357)||(38498344-38498407)
chr8 (299-357)||(9479414-9479472)
chr8 (299-357)||(10078304-10078362)
chr8 (305-356)||(5224300-5224351)
chr8 (294-357)||(33568162-33568225)
chr8 (294-356)||(16784331-16784393)
chr8 (299-357)||(30774125-30774183)
chr8 (294-355)||(12295260-12295321)
chr8 (305-356)||(1983583-1983634)
chr8 (309-355)||(13327038-13327084)
chr8 (309-354)||(14371613-14371658)
chr8 (299-356)||(16930903-16930960)
chr8 (299-356)||(44873913-44873970)
chr8 (305-357)||(12176311-12176363)
chr8 (305-357)||(12420739-12420791)
chr8 (305-357)||(23472514-23472565)
chr8 (305-349)||(39077388-39077432)
chr8 (294-357)||(28539163-28539226)
chr8 (319-357)||(16645537-16645575)
chr8 (305-347)||(31272879-31272921)
chr8 (310-356)||(38071134-38071180)
chr8 (319-357)||(39589995-39590033)
chr8 (319-356)||(3210924-3210961)
chr8 (305-356)||(1271131-1271182)
chr8 (309-356)||(42806210-42806257)
chr8 (294-355)||(22812416-22812476)
chr8 (310-338)||(1271070-1271098)
[»] chr5 (22 HSPs)
chr5 (299-357)||(9741725-9741783)
chr5 (299-357)||(38758721-38758779)
chr5 (294-357)||(23204376-23204439)
chr5 (294-356)||(27365716-27365778)
chr5 (299-357)||(28038305-28038363)
chr5 (299-357)||(33429243-33429301)
chr5 (294-357)||(16994235-16994298)
chr5 (294-357)||(19323796-19323859)
chr5 (310-357)||(23129647-23129694)
chr5 (306-357)||(37172500-37172551)
chr5 (305-355)||(20269235-20269285)
chr5 (305-357)||(13960484-13960536)
chr5 (305-357)||(19994565-19994617)
chr5 (305-357)||(21913853-21913905)
chr5 (310-357)||(16273677-16273724)
chr5 (311-357)||(19863159-19863205)
chr5 (311-357)||(31056485-31056531)
chr5 (299-335)||(38293580-38293616)
chr5 (305-355)||(15978804-15978854)
chr5 (319-357)||(16490776-16490814)
chr5 (299-357)||(17689439-17689497)
chr5 (309-357)||(18015643-18015690)
[»] chr4 (28 HSPs)
chr4 (293-355)||(5975657-5975719)
chr4 (294-357)||(6137259-6137322)
chr4 (294-357)||(20835706-20835769)
chr4 (299-357)||(13386983-13387041)
chr4 (299-357)||(34728322-34728380)
chr4 (294-354)||(52719062-52719122)
chr4 (294-357)||(22254222-22254285)
chr4 (294-357)||(32090060-32090123)
chr4 (294-357)||(48860820-48860883)
chr4 (294-356)||(34041289-34041351)
chr4 (294-356)||(38427166-38427228)
chr4 (299-355)||(38963344-38963400)
chr4 (310-357)||(54158116-54158163)
chr4 (299-357)||(51702456-51702514)
chr4 (305-357)||(43837798-43837850)
chr4 (305-357)||(51682667-51682719)
chr4 (299-346)||(32626164-32626211)
chr4 (294-357)||(42434326-42434389)
chr4 (294-356)||(52344494-52344556)
chr4 (304-357)||(13387863-13387915)
chr4 (305-357)||(11020456-11020508)
chr4 (305-357)||(20503432-20503484)
chr4 (305-349)||(47960403-47960447)
chr4 (305-356)||(19329360-19329411)
chr4 (305-356)||(33117514-33117565)
chr4 (310-357)||(42560177-42560224)
chr4 (309-338)||(28755403-28755432)
chr4 (299-335)||(6944662-6944698)
[»] scaffold0006 (1 HSPs)
scaffold0006 (305-357)||(231234-231286)
[»] chr6 (12 HSPs)
chr6 (294-354)||(17347140-17347200)
chr6 (294-357)||(6322489-6322552)
chr6 (294-357)||(18096330-18096393)
chr6 (309-355)||(10074994-10075040)
chr6 (294-347)||(12159542-12159595)
chr6 (294-338)||(15081139-15081183)
chr6 (319-357)||(19143629-19143667)
chr6 (304-357)||(9891372-9891425)
chr6 (315-355)||(24553313-24553353)
chr6 (320-356)||(28295551-28295587)
chr6 (320-356)||(28516486-28516522)
chr6 (320-356)||(32645436-32645472)
[»] scaffold0168 (1 HSPs)
scaffold0168 (299-357)||(35053-35111)
[»] chr1 (28 HSPs)
chr1 (294-356)||(26213793-26213855)
chr1 (294-355)||(9005430-9005491)
chr1 (300-357)||(44720065-44720122)
chr1 (305-357)||(1406709-1406761)
chr1 (309-355)||(5226801-5226847)
chr1 (299-356)||(25671076-25671133)
chr1 (299-355)||(14463321-14463377)
chr1 (294-357)||(7336152-7336215)
chr1 (294-357)||(25825392-25825455)
chr1 (294-357)||(30414196-30414259)
chr1 (305-355)||(17168157-17168207)
chr1 (299-357)||(38509719-38509777)
chr1 (299-356)||(1838760-1838817)
chr1 (305-357)||(2964967-2965019)
chr1 (305-356)||(1627779-1627830)
chr1 (304-355)||(47921562-47921613)
chr1 (319-357)||(1469752-1469790)
chr1 (299-357)||(17452995-17453053)
chr1 (309-355)||(40460983-40461029)
chr1 (299-357)||(42470756-42470814)
chr1 (299-352)||(41146547-41146600)
chr1 (294-338)||(43939546-43939590)
chr1 (305-357)||(49659891-49659943)
chr1 (309-356)||(30289073-30289120)
chr1 (319-357)||(26842810-26842848)
chr1 (305-355)||(30819618-30819668)
chr1 (309-357)||(14345694-14345743)
chr1 (294-343)||(24992959-24993008)
[»] scaffold0004 (1 HSPs)
scaffold0004 (299-356)||(121732-121789)
[»] scaffold0001 (1 HSPs)
scaffold0001 (299-357)||(392405-392463)
[»] scaffold0093 (1 HSPs)
scaffold0093 (299-353)||(9155-9209)
[»] scaffold0002 (1 HSPs)
scaffold0002 (305-351)||(478315-478361)
[»] scaffold0007 (1 HSPs)
scaffold0007 (307-354)||(77027-77074)
[»] scaffold0112 (2 HSPs)
scaffold0112 (310-356)||(24631-24677)
scaffold0112 (319-356)||(35956-35993)
[»] scaffold0086 (1 HSPs)
scaffold0086 (315-357)||(8581-8623)


Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 6 - 300
Target Start/End: Original strand, 32773140 - 32773440
Alignment:
Q  6 cataggcaaccaaaaagatagaacaaaatttgggaattttttaacaacctaattgccttatttgataataagaaattcaaagaacaaaagaaattgtacc 105  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  32773140 cataggcaaccaaaaagaaagaacaaaatttgggaattttttaacaacctaattgccttatttgataataagaaattcgaagaacaaaagaaattgtacc 32773239  T
Q  106 cagatttattgttcgaatatgaatcttcgataattctagagttttctttacataacaaagacataggttttaagttcaaattttttagttcatgcttaac 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  32773240 cagatttattgttcgaatatgaatcttcgataattctagagttttctagacataataaagacataggttttaagttcaaattttttagttcatgcttaac 32773339  T
Q  206 tacagttcatgtagtttacacccacggcccacccactcaaatgacga-------ttttttcttaaaacaaaacactaaaatgatgtactgcatgcaacat 298  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||       |||||| |||||||||||||| ||||||||||||||||||||||||    
T  32773340 tacagttcatgtagtttacacccacggcccacccactcaaatgatgattttttttttttttttaaaacaaaacac-aaaatgatgtactgcatgcaacat 32773438  T
Q  299 at 300  Q
    ||    
T  32773439 at 32773440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 3283374 - 3283432
Alignment:
Q  299 atgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3283374 atgctcatagaataacttgctaaaagacaccttcataaaatgtgtcttctagcaaaacc 3283432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 294 - 357
Target Start/End: Complemental strand, 54160451 - 54160388
Alignment:
Q  294 aacatatgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||| ||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  54160451 aacaaatgcttatagaataacttgctaaaagacaccttcataaaaggtgtcttctagcaaaacc 54160388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 303 - 357
Target Start/End: Original strand, 50090936 - 50090990
Alignment:
Q  303 taatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  50090936 taatagaataacttgctaaaagacaccttcataaaaggtgtcttctagcaaaacc 50090990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 305 - 357
Target Start/End: Complemental strand, 42092859 - 42092807
Alignment:
Q  305 atagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  42092859 atagaataacttgctaaaagacaccttcataaaaggtgtcttctagcaaaacc 42092807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 310 - 357
Target Start/End: Complemental strand, 6125817 - 6125770
Alignment:
Q  310 ataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||    
T  6125817 ataacttgctaaaagacaccttcataaaatgtgtcttctagcaaaacc 6125770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 294 - 357
Target Start/End: Original strand, 21395958 - 21396021
Alignment:
Q  294 aacatatgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||| ||||| ||||||||||||| ||||| |||||||||||||| ||||||||||||||||||    
T  21395958 aacaaatgctcatagaataacttgctaaaaaacaccttcataaaaggtgtcttctagcaaaacc 21396021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 294 - 357
Target Start/End: Complemental strand, 35180636 - 35180573
Alignment:
Q  294 aacatatgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||| ||||||||| |||||||| |||||||||||||||||||||| | |||||||||||||||    
T  35180636 aacaaatgctaataaaataactttttaaaagacaccttcataaaatatatcttctagcaaaacc 35180573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 307 - 357
Target Start/End: Original strand, 13700360 - 13700410
Alignment:
Q  307 agaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  13700360 agaataacttattaaaaaacaccttcataaaatgtgtcttctagcaaaacc 13700410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 35711930 - 35711988
Alignment:
Q  299 atgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    ||||| ||||||||||||| ||||||||||| || ||||||||||||||||||||||||    
T  35711930 atgctcatagaataacttgctaaaagacaccctcgtaaaatgtgtcttctagcaaaacc 35711988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 54253897 - 54253955
Alignment:
Q  299 atgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    ||||| ||||||||||||| ||||| |||||||||||||||| ||||||||||||||||    
T  54253897 atgctcatagaataacttgctaaaatacaccttcataaaatgcgtcttctagcaaaacc 54253955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 302 - 354
Target Start/End: Original strand, 34673573 - 34673625
Alignment:
Q  302 ctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaa 354  Q
    |||||| ||||||||| |||||||||||||||||||| |||||||||||||||    
T  34673573 ctaatataataacttgctaaaagacaccttcataaaaggtgtcttctagcaaa 34673625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 306 - 357
Target Start/End: Original strand, 5232726 - 5232777
Alignment:
Q  306 tagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||||||||||| |||| ||||||||||||||||||||||| ||||||||||    
T  5232726 tagaataacttgctaaatgacaccttcataaaatgtgtcttgtagcaaaacc 5232777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 294 - 357
Target Start/End: Complemental strand, 9665372 - 9665309
Alignment:
Q  294 aacatatgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||| ||| ||||||||||||||||||||||||||||||||| || ||||||| || |||||||    
T  9665372 aacaaatgttaatagaataacttgttaaaagacaccttcatagaaggtgtcttttaacaaaacc 9665309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 309 - 356
Target Start/End: Original strand, 27027332 - 27027379
Alignment:
Q  309 aataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaac 356  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||||    
T  27027332 aataacttgctaaaagacaccttcataaaaggtgtcttctagcaaaac 27027379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 299 - 349
Target Start/End: Complemental strand, 8351110 - 8351060
Alignment:
Q  299 atgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttcta 349  Q
    ||||| ||||||||||||| |||||||||||||||||||| ||||||||||    
T  8351110 atgctcatagaataacttgctaaaagacaccttcataaaaagtgtcttcta 8351060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 304 - 354
Target Start/End: Complemental strand, 39328465 - 39328415
Alignment:
Q  304 aatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaa 354  Q
    ||||| |||||||| |||||||||||||||||||| |||||||||||||||    
T  39328465 aataggataacttgctaaaagacaccttcataaaaggtgtcttctagcaaa 39328415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 299 - 356
Target Start/End: Complemental strand, 8674594 - 8674537
Alignment:
Q  299 atgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaac 356  Q
    ||||| ||| ||||||||| |||||||||| ||||||||| |||||||||||||||||    
T  8674594 atgctcataaaataacttgctaaaagacactttcataaaaggtgtcttctagcaaaac 8674537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 304 - 357
Target Start/End: Complemental strand, 36418766 - 36418713
Alignment:
Q  304 aatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    ||||| |||||||| |||||||||| ||||||||| ||||||||||||||||||    
T  36418766 aataggataacttgctaaaagacactttcataaaaggtgtcttctagcaaaacc 36418713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 299 - 356
Target Start/End: Complemental strand, 45408304 - 45408247
Alignment:
Q  299 atgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaac 356  Q
    ||||| ||||||||||||| |||||||||| ||||||||| |||| ||||||||||||    
T  45408304 atgctcatagaataacttgctaaaagacactttcataaaaggtgttttctagcaaaac 45408247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 319 - 356
Target Start/End: Original strand, 46969958 - 46969995
Alignment:
Q  319 taaaagacaccttcataaaatgtgtcttctagcaaaac 356  Q
    ||||||||||||||||||||||||||||||||||||||    
T  46969958 taaaagacaccttcataaaatgtgtcttctagcaaaac 46969995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 39867178 - 39867230
Alignment:
Q  305 atagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    ||||||||| ||| |||| |||||||||||||||||| |||||||||||||||    
T  39867178 atagaataatttgataaatgacaccttcataaaatgtttcttctagcaaaacc 39867230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 54411900 - 54411952
Alignment:
Q  305 atagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||||||| |||| ||||| |||||||||||||| ||||||||||||||||||    
T  54411900 atagaatatcttgctaaaaaacaccttcataaaaggtgtcttctagcaaaacc 54411952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 37702672 - 37702730
Alignment:
Q  299 atgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||| ||||| |||||||| |||||||||| |||| |||| ||||||||||||||||||    
T  37702672 atgccaataggataacttgctaaaagacactttcaaaaaaggtgtcttctagcaaaacc 37702730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 356
Target Start/End: Complemental strand, 46770541 - 46770495
Alignment:
Q  310 ataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaac 356  Q
    |||||||| |||||||||||||||||||  |||||||||||||||||    
T  46770541 ataacttgctaaaagacaccttcataaagggtgtcttctagcaaaac 46770495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 356
Target Start/End: Complemental strand, 52945627 - 52945571
Alignment:
Q  299 atgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaac 356  Q
    ||||| || |||||||||| |||||||||| |||||||||||| ||||||||||||||    
T  52945627 atgctcattgaataacttgctaaaagacactttcataaaatgt-tcttctagcaaaac 52945571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 346
Target Start/End: Original strand, 20513128 - 20513180
Alignment:
Q  294 aacatatgctaatagaataacttgttaaaagacaccttcataaaatgtgtctt 346  Q
    |||| ||||| ||||||||| ||| |||||||||||||||||||| |||||||    
T  20513128 aacaaatgctcatagaataaattgctaaaagacaccttcataaaaagtgtctt 20513180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 334
Target Start/End: Complemental strand, 4126031 - 4125996
Alignment:
Q  299 atgctaatagaataacttgttaaaagacaccttcat 334  Q
    ||||| ||||||||||||||||||||||||||||||    
T  4126031 atgctcatagaataacttgttaaaagacaccttcat 4125996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 357
Target Start/End: Complemental strand, 19855515 - 19855464
Alignment:
Q  306 tagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||||||||||| ||| |||||||||||||||| || |||||| ||||||||    
T  19855515 tagaataacttgctaatagacaccttcataaaaggtttcttctcgcaaaacc 19855464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 357
Target Start/End: Complemental strand, 41355415 - 41355378
Alignment:
Q  320 aaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||||||||||| ||||||||| |||||||||||||||    
T  41355415 aaaagacacctttataaaatgtatcttctagcaaaacc 41355378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 338
Target Start/End: Original strand, 34673449 - 34673485
Alignment:
Q  302 ctaatagaataacttgttaaaagacaccttcataaaa 338  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  34673449 ctaatataataacttgctaaaagacaccttcataaaa 34673485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 338
Target Start/End: Original strand, 34673511 - 34673547
Alignment:
Q  302 ctaatagaataacttgttaaaagacaccttcataaaa 338  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  34673511 ctaatataataacttgctaaaagacaccttcataaaa 34673547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 299 - 355
Target Start/End: Complemental strand, 21993527 - 21993471
Alignment:
Q  299 atgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaa 355  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  21993527 atgctaatagaataacttgctaaaagacaccttcataaaatgtgtcttctagcaaaa 21993471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 294 - 357
Target Start/End: Complemental strand, 45100033 - 45099970
Alignment:
Q  294 aacatatgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||| ||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  45100033 aacaaatgctcattgaataacttgttaaaaaacaccttcataaaatgtgtcttctagcaaaacc 45099970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 35983164 - 35983106
Alignment:
Q  299 atgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    ||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  35983164 atgctcatagaataacttgctaaaagacatcttcataaaatgtgtcttctagcaaaacc 35983106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 36004576 - 36004518
Alignment:
Q  299 atgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    ||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  36004576 atgctcatagaataacttgctaaaagacatcttcataaaatgtgtcttctagcaaaacc 36004518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 294 - 357
Target Start/End: Original strand, 3203384 - 3203447
Alignment:
Q  294 aacatatgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||| ||||| ||||||||||||| |||||||||||||||||||| || |||||||||||||||    
T  3203384 aacaaatgctcatagaataacttgctaaaagacaccttcataaaaggtatcttctagcaaaacc 3203447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 305 - 355
Target Start/End: Complemental strand, 3961228 - 3961178
Alignment:
Q  305 atagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaa 355  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  3961228 atagaataacttgctaaaagacactttcataaaatgtgtcttctagcaaaa 3961178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 304 - 356
Target Start/End: Original strand, 35221773 - 35221825
Alignment:
Q  304 aatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaac 356  Q
    |||||||||||||| |||||||||||||||||||| || ||||||||||||||    
T  35221773 aatagaataacttgctaaaagacaccttcataaaaagtatcttctagcaaaac 35221825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 46003837 - 46003889
Alignment:
Q  305 atagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    ||||| ||||||| |||||||||||||||| ||||||||||||||||||||||    
T  46003837 atagagtaacttgctaaaagacaccttcatgaaatgtgtcttctagcaaaacc 46003889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 306 - 357
Target Start/End: Original strand, 9522568 - 9522619
Alignment:
Q  306 tagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||| ||||||| ||||||||| |||||||||||||||||||||||||||||    
T  9522568 tagattaacttgctaaaagacatcttcataaaatgtgtcttctagcaaaacc 9522619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 294 - 357
Target Start/End: Complemental strand, 31953221 - 31953158
Alignment:
Q  294 aacatatgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||| ||||| ||||| ||||||| |||||||||||||||||||| |||| |||||||||||||    
T  31953221 aacaaatgctcatagactaacttgctaaaagacaccttcataaaaggtgtgttctagcaaaacc 31953158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 5995151 - 5995209
Alignment:
Q  299 atgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    ||||| ||| ||||||||| |||||||||| ||||||||| ||||||||||||||||||    
T  5995151 atgctcatataataacttgctaaaagacactttcataaaaggtgtcttctagcaaaacc 5995209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 312 - 357
Target Start/End: Original strand, 32392287 - 32392332
Alignment:
Q  312 aacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||    
T  32392287 aacttgctaaaagacaccttcataaaaggtgtcttctagcaaaacc 32392332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 304 - 357
Target Start/End: Original strand, 43077596 - 43077649
Alignment:
Q  304 aatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    ||||||| |||||| ||||| |||||||||||||| ||||||||||||||||||    
T  43077596 aatagaaaaacttgctaaaaaacaccttcataaaaggtgtcttctagcaaaacc 43077649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 357
Target Start/End: Complemental strand, 3875160 - 3875108
Alignment:
Q  305 atagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||| |||||||| ||||| |||| ||||||||||||||||||||||||||||    
T  3875160 ataggataacttgctaaaatacactttcataaaatgtgtcttctagcaaaacc 3875108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 315 - 355
Target Start/End: Original strand, 20009233 - 20009273
Alignment:
Q  315 ttgttaaaagacaccttcataaaatgtgtcttctagcaaaa 355  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  20009233 ttgttaaaagacaccttcataaaatgtgtcttatagcaaaa 20009273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 41378475 - 41378527
Alignment:
Q  305 atagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    ||||||||||||| ||||| ||||||| |||||| ||||||||||||||||||    
T  41378475 atagaataacttgctaaaaaacaccttaataaaaagtgtcttctagcaaaacc 41378527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 305 - 356
Target Start/End: Original strand, 27946927 - 27946978
Alignment:
Q  305 atagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaac 356  Q
    ||||||||||||| |||||||||||| ||||||  |||||||||||||||||    
T  27946927 atagaataacttgctaaaagacacctccataaagagtgtcttctagcaaaac 27946978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 304 - 357
Target Start/End: Original strand, 42373561 - 42373614
Alignment:
Q  304 aatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    ||||| |||| ||| |||||||||| ||||||||| ||||||||||||||||||    
T  42373561 aataggataatttgctaaaagacacattcataaaaggtgtcttctagcaaaacc 42373614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 349
Target Start/End: Original strand, 12362936 - 12362980
Alignment:
Q  305 atagaataacttgttaaaagacaccttcataaaatgtgtcttcta 349  Q
    |||||||||||||||||||||||| ||||||||  ||||||||||    
T  12362936 atagaataacttgttaaaagacacattcataaagggtgtcttcta 12362980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 48227335 - 48227387
Alignment:
Q  305 atagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||||||| |||| ||||| |||||||||||||| |||||||| |||||||||    
T  48227335 atagaatatcttgctaaaatacaccttcataaaaggtgtcttccagcaaaacc 48227387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 357
Target Start/End: Complemental strand, 27131043 - 27130996
Alignment:
Q  310 ataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||||||| ||||| |||||||||||||  ||||||||||||||||||    
T  27131043 ataacttgctaaaaaacaccttcataaagggtgtcttctagcaaaacc 27130996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 354
Target Start/End: Complemental strand, 41037182 - 41037127
Alignment:
Q  299 atgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaa 354  Q
    ||||| ||||||||| ||  |||||||||||||||||||| |||||||||| ||||    
T  41037182 atgctcatagaataatttactaaaagacaccttcataaaaggtgtcttctaacaaa 41037127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 356
Target Start/End: Complemental strand, 14313998 - 14313952
Alignment:
Q  310 ataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaac 356  Q
    |||||||| |||||||||||||||||||| || ||||||| ||||||    
T  14313998 ataacttgctaaaagacaccttcataaaaggtatcttctaacaaaac 14313952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 357
Target Start/End: Original strand, 48625002 - 48625040
Alignment:
Q  319 taaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||||||||||||||||||| ||||||| ||||||||||    
T  48625002 taaaagacaccttcataaaaggtgtcttatagcaaaacc 48625040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 355
Target Start/End: Original strand, 7596926 - 7596971
Alignment:
Q  310 ataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaa 355  Q
    |||| |||||||||||||||||||||||  ||||||| ||||||||    
T  7596926 ataatttgttaaaagacaccttcataaagagtgtcttttagcaaaa 7596971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 355
Target Start/End: Original strand, 20417981 - 20418026
Alignment:
Q  310 ataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaa 355  Q
    |||| ||| |||||||||| ||||||||| ||||||||||||||||    
T  20417981 ataatttgctaaaagacacattcataaaaggtgtcttctagcaaaa 20418026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 356
Target Start/End: Original strand, 28059323 - 28059379
Alignment:
Q  299 atgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaac 356  Q
    ||||| ||||||||||||  |||||||  ||||||||||| |||||||||||||||||    
T  28059323 atgctcatagaataacttcctaaaagat-ccttcataaaaggtgtcttctagcaaaac 28059379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 338
Target Start/End: Complemental strand, 24251937 - 24251909
Alignment:
Q  310 ataacttgttaaaagacaccttcataaaa 338  Q
    |||||||||||||||||||||||||||||    
T  24251937 ataacttgttaaaagacaccttcataaaa 24251909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 355
Target Start/End: Original strand, 28333819 - 28333855
Alignment:
Q  319 taaaagacaccttcataaaatgtgtcttctagcaaaa 355  Q
    ||||||||||||||||| || ||||||||||||||||    
T  28333819 taaaagacaccttcatacaaggtgtcttctagcaaaa 28333855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 294 - 357
Target Start/End: Original strand, 1750009 - 1750072
Alignment:
Q  294 aacatatgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  1750009 aacaaatgctaatagaataacctgctaaaagacaccttcataaaatgtgtcttctagcaaaacc 1750072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 299 - 355
Target Start/End: Original strand, 10664787 - 10664843
Alignment:
Q  299 atgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaa 355  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  10664787 atgctcatagaataacttgctaaaagacaccttcataaaatgtgtcttatagcaaaa 10664843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 29471736 - 29471788
Alignment:
Q  305 atagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  29471736 atagaataacttgctaaaagacaccttcataaaaggtgtcttctagcaaaacc 29471788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 305 - 356
Target Start/End: Original strand, 18924641 - 18924692
Alignment:
Q  305 atagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaac 356  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  18924641 atagaataacttgctaaaagacaccttcataaaaggtgtcttctagcaaaac 18924692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 294 - 357
Target Start/End: Original strand, 39089194 - 39089257
Alignment:
Q  294 aacatatgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||| ||| |||||||||||||||||||||||||| ||||||||| |||||||||| |||||||    
T  39089194 aacaaatgttaatagaataacttgttaaaagacacattcataaaaggtgtcttctaacaaaacc 39089257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 310 - 356
Target Start/End: Complemental strand, 4206476 - 4206430
Alignment:
Q  310 ataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaac 356  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  4206476 ataacttgctaaaagacaccttcataaaatgtgtcttctagcaaaac 4206430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 310 - 356
Target Start/End: Original strand, 39961645 - 39961691
Alignment:
Q  310 ataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaac 356  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||    
T  39961645 ataacttgttaaaagacaccttcataaaatgtatcttctagcaaaac 39961691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 310 - 353
Target Start/End: Original strand, 27175517 - 27175560
Alignment:
Q  310 ataacttgttaaaagacaccttcataaaatgtgtcttctagcaa 353  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  27175517 ataacttgctaaaagacaccttcataaaatgtgtcttctagcaa 27175560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 9548306 - 9548364
Alignment:
Q  299 atgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    ||||| ||||||||||||| ||||||||||||||||||||  |||||| ||||||||||    
T  9548306 atgctcatagaataacttgctaaaagacaccttcataaaagatgtcttatagcaaaacc 9548364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 299 - 356
Target Start/End: Original strand, 12725813 - 12725870
Alignment:
Q  299 atgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaac 356  Q
    ||||| ||||||||||||| ||||||||| ||| |||||| |||||||||||||||||    
T  12725813 atgctcatagaataacttgctaaaagacatctttataaaaggtgtcttctagcaaaac 12725870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 308 - 357
Target Start/End: Original strand, 16719832 - 16719881
Alignment:
Q  308 gaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||||||| | |||||||||||||||||||| ||||||||||||||||||    
T  16719832 gaataactagctaaaagacaccttcataaaaggtgtcttctagcaaaacc 16719881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 304 - 357
Target Start/End: Complemental strand, 33740287 - 33740234
Alignment:
Q  304 aatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    ||||| |||||||| |||||||||||||||||||| ||||||||||| ||||||    
T  33740287 aataggataacttgctaaaagacaccttcataaaaggtgtcttctagtaaaacc 33740234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 319 - 355
Target Start/End: Complemental strand, 34450353 - 34450317
Alignment:
Q  319 taaaagacaccttcataaaatgtgtcttctagcaaaa 355  Q
    |||||||||||||||||||||||||||||||||||||    
T  34450353 taaaagacaccttcataaaatgtgtcttctagcaaaa 34450317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 356
Target Start/End: Original strand, 39435040 - 39435084
Alignment:
Q  312 aacttgttaaaagacaccttcataaaatgtgtcttctagcaaaac 356  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||    
T  39435040 aacttgttaaaagacactttcataaaaggtgtcttctagcaaaac 39435084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 294 - 357
Target Start/End: Original strand, 25810496 - 25810559
Alignment:
Q  294 aacatatgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||| ||| ||||| ||||||||| ||||| |||||||||||||| || |||||||||||||||    
T  25810496 aacaaatgataatataataacttgctaaaaaacaccttcataaaaggtatcttctagcaaaacc 25810559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 310 - 357
Target Start/End: Complemental strand, 25880622 - 25880575
Alignment:
Q  310 ataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||||||| ||||| |||||||||||||| ||||||||||||||||||    
T  25880622 ataacttgctaaaaaacaccttcataaaaagtgtcttctagcaaaacc 25880575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 357
Target Start/End: Complemental strand, 10862614 - 10862576
Alignment:
Q  319 taaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  10862614 taaaagacaccttcataaaaggtgtcttctagcaaaacc 10862576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 357
Target Start/End: Original strand, 29511892 - 29511930
Alignment:
Q  319 taaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  29511892 taaaagacaccttcataaaatgtgttttctagcaaaacc 29511930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 338
Target Start/End: Complemental strand, 21950702 - 21950658
Alignment:
Q  294 aacatatgctaatagaataacttgttaaaagacaccttcataaaa 338  Q
    |||| ||||| ||||||||||||| ||||||||||||||||||||    
T  21950702 aacaaatgctcatagaataacttgctaaaagacaccttcataaaa 21950658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 356
Target Start/End: Complemental strand, 6231258 - 6231221
Alignment:
Q  319 taaaagacaccttcataaaatgtgtcttctagcaaaac 356  Q
    |||||||||||||||||||  |||||||||||||||||    
T  6231258 taaaagacaccttcataaatggtgtcttctagcaaaac 6231221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 357
Target Start/End: Original strand, 14747413 - 14747450
Alignment:
Q  320 aaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||||||||||||||||||  |||||||||||||||||    
T  14747413 aaaagacaccttcataaaagatgtcttctagcaaaacc 14747450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 356
Target Start/End: Original strand, 36779860 - 36779897
Alignment:
Q  319 taaaagacaccttcataaaatgtgtcttctagcaaaac 356  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  36779860 taaaagacaccttcataaaaggtgtcttctaggaaaac 36779897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 357
Target Start/End: Complemental strand, 27097065 - 27097033
Alignment:
Q  325 acaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||||||||||||| ||||||||||||||||||    
T  27097065 acaccttcataaaaggtgtcttctagcaaaacc 27097033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 355
Target Start/End: Original strand, 44539948 - 44539996
Alignment:
Q  307 agaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaa 355  Q
    ||||||||||| |||| |||||||||||||||  ||||||||| |||||    
T  44539948 agaataacttgctaaatgacaccttcataaaagatgtcttctaacaaaa 44539996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 26912421 - 26912479
Alignment:
Q  299 atgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26912421 atgctcatagaataacttgttaaaagacacattcataaaatgtgtcttctagcaaaacc 26912479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 294 - 357
Target Start/End: Original strand, 38498344 - 38498407
Alignment:
Q  294 aacatatgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||| ||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  38498344 aacaaatgttaatagaataacttgctaaaagacaccttcataaaaggtgtcttctagcaaaacc 38498407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 9479472 - 9479414
Alignment:
Q  299 atgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  9479472 atgctcatagaataacttgctaaaagacaccttcataaaatgtgtcttctaacaaaacc 9479414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 10078362 - 10078304
Alignment:
Q  299 atgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    ||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  10078362 atgctcatagaataacttgctaaaagacaccttcataaaaggtgtcttctagcaaaacc 10078304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 305 - 356
Target Start/End: Complemental strand, 5224351 - 5224300
Alignment:
Q  305 atagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaac 356  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  5224351 atagaataacttgttaaaagacaccttcataaaaagtgtcttatagcaaaac 5224300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 294 - 357
Target Start/End: Original strand, 33568162 - 33568225
Alignment:
Q  294 aacatatgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||| ||||| ||||||||||||| ||||||||||||| ||||||||||||||||| |||||||    
T  33568162 aacaaatgctcatagaataacttgataaaagacacctttataaaatgtgtcttctaacaaaacc 33568225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 294 - 356
Target Start/End: Complemental strand, 16784393 - 16784331
Alignment:
Q  294 aacatatgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaac 356  Q
    |||| ||| ||||| ||||||||| |||||||||||||||||||| |||||||||||||||||    
T  16784393 aacaaatgttaatataataacttgctaaaagacaccttcataaaaggtgtcttctagcaaaac 16784331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 30774183 - 30774125
Alignment:
Q  299 atgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    ||||| ||||||||||||| ||||| |||||||||||||| ||||||||||||||||||    
T  30774183 atgctcatagaataacttgctaaaaaacaccttcataaaaggtgtcttctagcaaaacc 30774125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 294 - 355
Target Start/End: Original strand, 12295260 - 12295321
Alignment:
Q  294 aacatatgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaa 355  Q
    |||| ||||||||||||||||||| |||||||||| ||||||||| ||||||| ||||||||    
T  12295260 aacaaatgctaatagaataacttgctaaaagacacattcataaaaggtgtcttatagcaaaa 12295321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 356
Target Start/End: Original strand, 1983583 - 1983634
Alignment:
Q  305 atagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaac 356  Q
    ||||||||| ||||||||||||||||||||||||||||||||| || |||||    
T  1983583 atagaataatttgttaaaagacaccttcataaaatgtgtcttccagtaaaac 1983634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 309 - 355
Target Start/End: Original strand, 13327038 - 13327084
Alignment:
Q  309 aataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaa 355  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||||    
T  13327038 aataacttgctaaaagataccttcataaaatgtgtcttctagcaaaa 13327084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 309 - 354
Target Start/End: Original strand, 14371613 - 14371658
Alignment:
Q  309 aataacttgttaaaagacaccttcataaaatgtgtcttctagcaaa 354  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||    
T  14371613 aataacttgctaaaagacaccttcataaaaggtgtcttctagcaaa 14371658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 299 - 356
Target Start/End: Original strand, 16930903 - 16930960
Alignment:
Q  299 atgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaac 356  Q
    ||||| ||||||||||||| |||||||||||||||||||| || ||||||| ||||||    
T  16930903 atgctcatagaataacttgctaaaagacaccttcataaaaggtatcttctatcaaaac 16930960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 299 - 356
Target Start/End: Complemental strand, 44873970 - 44873913
Alignment:
Q  299 atgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaac 356  Q
    ||||| ||||||||||||| ||||| |||||||||||||| |||||||||| ||||||    
T  44873970 atgctcatagaataacttgctaaaaaacaccttcataaaaggtgtcttctaacaaaac 44873913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 12176311 - 12176363
Alignment:
Q  305 atagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||| |||||||| ||||| |||||||||||||| ||||||||||||||||||    
T  12176311 ataggataacttgctaaaacacaccttcataaaaggtgtcttctagcaaaacc 12176363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 12420739 - 12420791
Alignment:
Q  305 atagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||| |||||||| ||||| |||||||||||||| ||||||||||||||||||    
T  12420739 ataggataacttgctaaaacacaccttcataaaaggtgtcttctagcaaaacc 12420791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 357
Target Start/End: Complemental strand, 23472565 - 23472514
Alignment:
Q  305 atagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    ||||||||||| | |||||||||||||||||||| ||||||||||||||||||    
T  23472565 atagaataact-gctaaaagacaccttcataaaaggtgtcttctagcaaaacc 23472514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 349
Target Start/End: Original strand, 39077388 - 39077432
Alignment:
Q  305 atagaataacttgttaaaagacaccttcataaaatgtgtcttcta 349  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||    
T  39077388 atagaataacttgctaaaagacaccttcataaaaggtgtcttcta 39077432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 294 - 357
Target Start/End: Complemental strand, 28539226 - 28539163
Alignment:
Q  294 aacatatgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||| ||||| ||| ||||||||| |||||||||  |||||||||||||||||||| |||||||    
T  28539226 aacaaatgctcataaaataacttgctaaaagacatattcataaaatgtgtcttctaacaaaacc 28539163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 357
Target Start/End: Original strand, 16645537 - 16645575
Alignment:
Q  319 taaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  16645537 taaaagacaccttcataaaaggtgtcttctagcaaaacc 16645575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 347
Target Start/End: Original strand, 31272879 - 31272921
Alignment:
Q  305 atagaataacttgttaaaagacaccttcataaaatgtgtcttc 347  Q
    ||||||||| ||||||||| |||||||||||||||||||||||    
T  31272879 atagaataatttgttaaaaaacaccttcataaaatgtgtcttc 31272921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 356
Target Start/End: Complemental strand, 38071180 - 38071134
Alignment:
Q  310 ataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaac 356  Q
    |||||||| |||||||||| ||||||||||||||||| |||||||||    
T  38071180 ataacttgctaaaagacacattcataaaatgtgtcttttagcaaaac 38071134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 357
Target Start/End: Original strand, 39589995 - 39590033
Alignment:
Q  319 taaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  39589995 taaaagacaccttcataaaaggtgtcttctagcaaaacc 39590033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 319 - 356
Target Start/End: Original strand, 3210924 - 3210961
Alignment:
Q  319 taaaagacaccttcataaaatgtgtcttctagcaaaac 356  Q
    |||||||||||||||||||| |||||||||||||||||    
T  3210924 taaaagacaccttcataaaaggtgtcttctagcaaaac 3210961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 356
Target Start/End: Original strand, 1271131 - 1271182
Alignment:
Q  305 atagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaac 356  Q
    |||| |||||||||||||| ||||||| |||||  |||||||||||||||||    
T  1271131 ataggataacttgttaaaaaacacctttataaagggtgtcttctagcaaaac 1271182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 356
Target Start/End: Complemental strand, 42806257 - 42806210
Alignment:
Q  309 aataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaac 356  Q
    ||||| ||| ||||||||| |||||||||| |||||||||||||||||    
T  42806257 aataatttgctaaaagacatcttcataaaaggtgtcttctagcaaaac 42806210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 355
Target Start/End: Original strand, 22812416 - 22812476
Alignment:
Q  294 aacatatgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaa 355  Q
    |||| ||||| |||||||||| || ||||||| ||||  |||||||||||||||||||||||    
T  22812416 aacaaatgctcatagaataacgtgctaaaagataccta-ataaaatgtgtcttctagcaaaa 22812476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 338
Target Start/End: Original strand, 1271070 - 1271098
Alignment:
Q  310 ataacttgttaaaagacaccttcataaaa 338  Q
    |||||||||||||||||||||||||||||    
T  1271070 ataacttgttaaaagacaccttcataaaa 1271098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 9741783 - 9741725
Alignment:
Q  299 atgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  9741783 atgctcatagaataatttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 9741725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 38758721 - 38758779
Alignment:
Q  299 atgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  38758721 atgctcatagaataacttgctaaaagacaccttcataaaatgtgtcttctagcaaaacc 38758779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 294 - 357
Target Start/End: Complemental strand, 23204439 - 23204376
Alignment:
Q  294 aacatatgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  23204439 aacaaatgctcatagaataacttgttaaaagacaccttcataaaagatgtcttctagcaaaacc 23204376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 294 - 356
Target Start/End: Complemental strand, 27365778 - 27365716
Alignment:
Q  294 aacatatgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaac 356  Q
    |||| ||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  27365778 aacaaatgctcatagaataacttgctaaaagacaccttcataaaaggtgtcttctagcaaaac 27365716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 28038305 - 28038363
Alignment:
Q  299 atgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    ||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  28038305 atgctcatagaataacttgctaaaagacactttcataaaatgtgtcttctagcaaaacc 28038363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 33429243 - 33429301
Alignment:
Q  299 atgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    ||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  33429243 atgctcatagaataacttgctaaaaggcaccttcataaaatgtgtcttctagcaaaacc 33429301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 294 - 357
Target Start/End: Original strand, 16994235 - 16994298
Alignment:
Q  294 aacatatgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||| ||||| ||||||||||||| ||||  |||||||||||||||||||||||||||||||||    
T  16994235 aacaaatgctcatagaataacttgctaaacaacaccttcataaaatgtgtcttctagcaaaacc 16994298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 294 - 357
Target Start/End: Original strand, 19323796 - 19323859
Alignment:
Q  294 aacatatgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||| ||||||| || |||||||| |||||||||||||||||||| ||||||||||||||||||    
T  19323796 aacaaatgctaaaaggataacttgctaaaagacaccttcataaaaggtgtcttctagcaaaacc 19323859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 310 - 357
Target Start/End: Original strand, 23129647 - 23129694
Alignment:
Q  310 ataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||    
T  23129647 ataacttgttaaaagacaccttcataaaatgtgtattctaacaaaacc 23129694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 306 - 357
Target Start/End: Original strand, 37172500 - 37172551
Alignment:
Q  306 tagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||| |||||    
T  37172500 tagaataacttgttaaaagacaccttcataaaaggtgacttctagccaaacc 37172551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 305 - 355
Target Start/End: Complemental strand, 20269285 - 20269235
Alignment:
Q  305 atagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaa 355  Q
    ||||||||||||| ||||||||||||||||||||  |||||||||||||||    
T  20269285 atagaataacttgctaaaagacaccttcataaaagctgtcttctagcaaaa 20269235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 13960484 - 13960536
Alignment:
Q  305 atagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||| |||||||| |||||||||||||||||||| |||||||||||| |||||    
T  13960484 ataggataacttgctaaaagacaccttcataaaaagtgtcttctagcgaaacc 13960536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 357
Target Start/End: Complemental strand, 19994617 - 19994565
Alignment:
Q  305 atagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    ||||||||||||| |||||||||  ||| ||||||||||||||||||||||||    
T  19994617 atagaataacttgctaaaagacatgttcttaaaatgtgtcttctagcaaaacc 19994565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 21913853 - 21913905
Alignment:
Q  305 atagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||| |||||||| |||||||||||||||||||  ||||||||||||||||||    
T  21913853 ataggataacttgctaaaagacaccttcataaagggtgtcttctagcaaaacc 21913905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 310 - 357
Target Start/End: Original strand, 16273677 - 16273724
Alignment:
Q  310 ataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||||||| |||||||||||||||||||  ||||||||||||||||||    
T  16273677 ataacttgctaaaagacaccttcataaagggtgtcttctagcaaaacc 16273724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 357
Target Start/End: Original strand, 19863159 - 19863205
Alignment:
Q  311 taacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    ||||||||||||||||||||||| |||| |||||||| |||||||||    
T  19863159 taacttgttaaaagacaccttcacaaaaagtgtcttccagcaaaacc 19863205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 357
Target Start/End: Original strand, 31056485 - 31056531
Alignment:
Q  311 taacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    ||||||| ||||| |||||||||||||| ||||||||||||||||||    
T  31056485 taacttgctaaaatacaccttcataaaaggtgtcttctagcaaaacc 31056531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 335
Target Start/End: Original strand, 38293580 - 38293616
Alignment:
Q  299 atgctaatagaataacttgttaaaagacaccttcata 335  Q
    ||||| |||||||||||||||||||||||||||||||    
T  38293580 atgctcatagaataacttgttaaaagacaccttcata 38293616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 355
Target Start/End: Complemental strand, 15978854 - 15978804
Alignment:
Q  305 atagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaa 355  Q
    ||||| ||| ||| ||||||||||||||||||||||||||| ||| |||||    
T  15978854 atagattaatttgctaaaagacaccttcataaaatgtgtctcctaccaaaa 15978804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 357
Target Start/End: Original strand, 16490776 - 16490814
Alignment:
Q  319 taaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    ||||||||| |||||||||| ||||||||||||||||||    
T  16490776 taaaagacatcttcataaaaggtgtcttctagcaaaacc 16490814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 17689439 - 17689497
Alignment:
Q  299 atgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    ||||| |||||||||| |  ||||||||| ||| ||||||||||||||||| |||||||    
T  17689439 atgctcatagaataacctactaaaagacatctttataaaatgtgtcttctaacaaaacc 17689497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 357
Target Start/End: Complemental strand, 18015690 - 18015643
Alignment:
Q  309 aataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    ||||||||| ||||||||||||||||| || ||||| ||||||||||||    
T  18015690 aataacttgctaaaagacaccttcatataaggtgtc-tctagcaaaacc 18015643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 293 - 355
Target Start/End: Complemental strand, 5975719 - 5975657
Alignment:
Q  293 caacatatgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaa 355  Q
    ||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  5975719 caacaaatgctaatataataacttgctaaaagacaccttcataaaatgtgtcttctagcaaaa 5975657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 294 - 357
Target Start/End: Complemental strand, 6137322 - 6137259
Alignment:
Q  294 aacatatgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||| ||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||    
T  6137322 aacaaatgctaatagaataacttgctaaaagacacattcataaaaggtgtcttctagcaaaacc 6137259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 294 - 357
Target Start/End: Complemental strand, 20835769 - 20835706
Alignment:
Q  294 aacatatgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||| ||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||    
T  20835769 aacaaatgctaatagaataacttgctaaaagacaccttcataaaaggtgtcttatagcaaaacc 20835706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 13387041 - 13386983
Alignment:
Q  299 atgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    ||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  13387041 atgctcatagaataacttgctaaaagacacctttataaaatgtgtcttctagcaaaacc 13386983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 34728322 - 34728380
Alignment:
Q  299 atgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    ||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  34728322 atgcttatagaataacttgctaaaagacaccttcataaaaggtgtcttctagcaaaacc 34728380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 294 - 354
Target Start/End: Complemental strand, 52719122 - 52719062
Alignment:
Q  294 aacatatgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaa 354  Q
    |||| ||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||    
T  52719122 aacaaatgctaatagaataatttgttaaagaacaccttcataaaatgtgtcttctagcaaa 52719062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 294 - 357
Target Start/End: Complemental strand, 22254285 - 22254222
Alignment:
Q  294 aacatatgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||| |||| |||||||||||||| ||||||||||||||||||||  |||||||||||||||||    
T  22254285 aacaaatgccaatagaataacttgctaaaagacaccttcataaaaaatgtcttctagcaaaacc 22254222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 294 - 357
Target Start/End: Original strand, 32090060 - 32090123
Alignment:
Q  294 aacatatgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||| ||||||||| ||||||||| ||||||||||||||||||||  |||||||||||||||||    
T  32090060 aacaaatgctaataaaataacttgctaaaagacaccttcataaaagatgtcttctagcaaaacc 32090123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 294 - 357
Target Start/End: Original strand, 48860820 - 48860883
Alignment:
Q  294 aacatatgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||| ||||| ||||||||||||| ||||||||||||| |||||| ||||||||||||||||||    
T  48860820 aacaaatgctcatagaataacttgctaaaagacacctttataaaaggtgtcttctagcaaaacc 48860883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 294 - 356
Target Start/End: Original strand, 34041289 - 34041351
Alignment:
Q  294 aacatatgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaac 356  Q
    |||| ||||| ||||| ||||||| |||||||||| |||||||||||||||||||||||||||    
T  34041289 aacaaatgcttatagagtaacttgctaaaagacacattcataaaatgtgtcttctagcaaaac 34041351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 294 - 356
Target Start/End: Original strand, 38427166 - 38427228
Alignment:
Q  294 aacatatgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaac 356  Q
    |||| ||| ||||||||||||||| |||||||||| ||||||||| |||||||||||||||||    
T  38427166 aacaaatgttaatagaataacttgctaaaagacactttcataaaaggtgtcttctagcaaaac 38427228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 299 - 355
Target Start/End: Original strand, 38963344 - 38963400
Alignment:
Q  299 atgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaa 355  Q
    ||||| ||||||||||||| |||||||||| ||||||||| ||||||||||||||||    
T  38963344 atgctcatagaataacttgctaaaagacacattcataaaaggtgtcttctagcaaaa 38963400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 310 - 357
Target Start/End: Complemental strand, 54158163 - 54158116
Alignment:
Q  310 ataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||    
T  54158163 ataacttgctaaaagacaccttcataaaaggtgtcttctagcaaaacc 54158116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 51702514 - 51702456
Alignment:
Q  299 atgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    ||||| ||||||||||||| |||||||||| ||||||| | ||||||||||||||||||    
T  51702514 atgctcatagaataacttgctaaaagacactttcataagaggtgtcttctagcaaaacc 51702456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 43837798 - 43837850
Alignment:
Q  305 atagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||| |||||||| |||| ||||||||||||||| ||||||||||||||||||    
T  43837798 ataggataacttgctaaacgacaccttcataaaaggtgtcttctagcaaaacc 43837850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 51682667 - 51682719
Alignment:
Q  305 atagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    ||||||||||||| ||||| |||||||||||||| |||| |||||||||||||    
T  51682667 atagaataacttgctaaaaaacaccttcataaaaggtgttttctagcaaaacc 51682719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 346
Target Start/End: Original strand, 32626164 - 32626211
Alignment:
Q  299 atgctaatagaataacttgttaaaagacaccttcataaaatgtgtctt 346  Q
    ||||| ||||||||||||| |||||||||||||||||||| |||||||    
T  32626164 atgctcatagaataacttgctaaaagacaccttcataaaaggtgtctt 32626211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 294 - 357
Target Start/End: Original strand, 42434326 - 42434389
Alignment:
Q  294 aacatatgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||| ||||| ||||||||||||| ||||| |||||||| ||||| |||||||||| |||||||    
T  42434326 aacaaatgctcatagaataacttgctaaaaaacaccttcctaaaaggtgtcttctaacaaaacc 42434389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 356
Target Start/End: Complemental strand, 52344556 - 52344494
Alignment:
Q  294 aacatatgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaac 356  Q
    |||| ||||| |||||||||| | ||||| || || |||||||||||||||||||||||||||    
T  52344556 aacaaatgcttatagaataacatattaaatgatacattcataaaatgtgtcttctagcaaaac 52344494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 304 - 357
Target Start/End: Complemental strand, 13387915 - 13387863
Alignment:
Q  304 aatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    ||||| |||||||| |||||||||||| ||||||||||||| ||||||||||||    
T  13387915 aataggataacttgctaaaagacacct-cataaaatgtgtcatctagcaaaacc 13387863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 11020456 - 11020508
Alignment:
Q  305 atagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    ||||||||||||| ||||| |||||||||||||| ||||||| || |||||||    
T  11020456 atagaataacttgctaaaacacaccttcataaaaggtgtcttttaacaaaacc 11020508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 357
Target Start/End: Complemental strand, 20503484 - 20503432
Alignment:
Q  305 atagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||||||| |||| ||||| |||||||||||||| ||| ||||||||||||||    
T  20503484 atagaatatcttgctaaaaaacaccttcataaaaggtgccttctagcaaaacc 20503432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 349
Target Start/End: Original strand, 47960403 - 47960447
Alignment:
Q  305 atagaataacttgttaaaagacaccttcataaaatgtgtcttcta 349  Q
    |||| |||||||| |||||||||||||||||||| ||||||||||    
T  47960403 ataggataacttgctaaaagacaccttcataaaaggtgtcttcta 47960447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 356
Target Start/End: Complemental strand, 19329411 - 19329360
Alignment:
Q  305 atagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaac 356  Q
    ||||||||| ||||||||| ||||||||||||||  ||| ||||||||||||    
T  19329411 atagaataatttgttaaaatacaccttcataaaagatgttttctagcaaaac 19329360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 356
Target Start/End: Complemental strand, 33117565 - 33117514
Alignment:
Q  305 atagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaac 356  Q
    |||||||| |||| ||||| |||||||||||||| || ||||||||||||||    
T  33117565 atagaatatcttgctaaaatacaccttcataaaaggtatcttctagcaaaac 33117514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 357
Target Start/End: Original strand, 42560177 - 42560224
Alignment:
Q  310 ataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||||||||||||| ||| ||||||||||||||| |||||| ||||||    
T  42560177 ataacttgttaaaatacatcttcataaaatgtgtgttctagtaaaacc 42560224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 338
Target Start/End: Complemental strand, 28755432 - 28755403
Alignment:
Q  309 aataacttgttaaaagacaccttcataaaa 338  Q
    ||||||||||||||||||||||||||||||    
T  28755432 aataacttgttaaaagacaccttcataaaa 28755403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 335
Target Start/End: Original strand, 6944662 - 6944698
Alignment:
Q  299 atgctaatagaataacttgttaaaagacaccttcata 335  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  6944662 atgctcatagaataacttgctaaaagacaccttcata 6944698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 231234 - 231286
Alignment:
Q  305 atagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  231234 atagaataatttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 231286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 294 - 354
Target Start/End: Original strand, 17347140 - 17347200
Alignment:
Q  294 aacatatgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaa 354  Q
    |||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  17347140 aacaaatgctaatataataacttgctaaaagacaccttcataaaatgtgtcttctagcaaa 17347200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 294 - 357
Target Start/End: Complemental strand, 6322552 - 6322489
Alignment:
Q  294 aacatatgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||| ||||||||||||||||||||||||| ||||| ||||||||  |||||||||||||||||    
T  6322552 aacaaatgctaatagaataacttgttaaaaaacaccctcataaaagatgtcttctagcaaaacc 6322489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 294 - 357
Target Start/End: Complemental strand, 18096393 - 18096330
Alignment:
Q  294 aacatatgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||| ||||| ||||||||||||| ||||||||||||||| ||||  |||||||||||||||||    
T  18096393 aacaaatgctcatagaataacttgctaaaagacaccttcacaaaagatgtcttctagcaaaacc 18096330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 309 - 355
Target Start/End: Complemental strand, 10075040 - 10074994
Alignment:
Q  309 aataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaa 355  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||    
T  10075040 aataacttgttaaaagacactttcataaaaggtgtcttctagcaaaa 10074994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 294 - 347
Target Start/End: Original strand, 12159542 - 12159595
Alignment:
Q  294 aacatatgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttc 347  Q
    |||| ||||||||| ||||||||| |||||||||||||||||||| ||||||||    
T  12159542 aacaaatgctaatataataacttgctaaaagacaccttcataaaaggtgtcttc 12159595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 338
Target Start/End: Complemental strand, 15081183 - 15081139
Alignment:
Q  294 aacatatgctaatagaataacttgttaaaagacaccttcataaaa 338  Q
    |||| ||||| ||||||||||||| ||||||||||||||||||||    
T  15081183 aacaaatgctcatagaataacttgctaaaagacaccttcataaaa 15081139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 357
Target Start/End: Complemental strand, 19143667 - 19143629
Alignment:
Q  319 taaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||||||||||||||||||| || |||||||||||||||    
T  19143667 taaaagacaccttcataaaaggtatcttctagcaaaacc 19143629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 357
Target Start/End: Complemental strand, 9891425 - 9891372
Alignment:
Q  304 aatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    ||||| |||| ||| ||||||||||||| |||||| || |||||||||||||||    
T  9891425 aataggataatttgctaaaagacacctttataaaaggtatcttctagcaaaacc 9891372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 355
Target Start/End: Original strand, 24553313 - 24553353
Alignment:
Q  315 ttgttaaaagacaccttcataaaatgtgtcttctagcaaaa 355  Q
    ||||||||||||||||  ||||||||||||||||| |||||    
T  24553313 ttgttaaaagacacctcgataaaatgtgtcttctaacaaaa 24553353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 356
Target Start/End: Complemental strand, 28295587 - 28295551
Alignment:
Q  320 aaaagacaccttcataaaatgtgtcttctagcaaaac 356  Q
    |||||||||||||||||||  ||||||||||||||||    
T  28295587 aaaagacaccttcataaaagatgtcttctagcaaaac 28295551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 356
Target Start/End: Original strand, 28516486 - 28516522
Alignment:
Q  320 aaaagacaccttcataaaatgtgtcttctagcaaaac 356  Q
    |||||||||||||||||||  ||||||||||||||||    
T  28516486 aaaagacaccttcataaaagatgtcttctagcaaaac 28516522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 356
Target Start/End: Complemental strand, 32645472 - 32645436
Alignment:
Q  320 aaaagacaccttcataaaatgtgtcttctagcaaaac 356  Q
    ||||||||| ||||||| |||||||||||||||||||    
T  32645472 aaaagacactttcataatatgtgtcttctagcaaaac 32645436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 35111 - 35053
Alignment:
Q  299 atgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    ||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  35111 atgctcatagaataacttgctaaaagacaccttcataaaaggtgtcttctagcaaaacc 35053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 294 - 356
Target Start/End: Original strand, 26213793 - 26213855
Alignment:
Q  294 aacatatgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaac 356  Q
    |||| ||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  26213793 aacaaatgctcatagaataacttgctaaaagacaccttcgtaaaatgtgtcttctagcaaaac 26213855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 294 - 355
Target Start/End: Complemental strand, 9005491 - 9005430
Alignment:
Q  294 aacatatgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaa 355  Q
    |||| ||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  9005491 aacaaatgctgatagaataacttgctaaaagacaccttcataaaaggtgtcttctagcaaaa 9005430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 300 - 357
Target Start/End: Complemental strand, 44720122 - 44720065
Alignment:
Q  300 tgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||    
T  44720122 tgctaatagaataacttgctaaaagacaccttcataaaaggtgtcttctaacaaaacc 44720065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 305 - 357
Target Start/End: Complemental strand, 1406761 - 1406709
Alignment:
Q  305 atagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  1406761 atagaataatttgctaaaagacaccttcataaaatgtgtcttctagcaaaacc 1406709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 309 - 355
Target Start/End: Complemental strand, 5226847 - 5226801
Alignment:
Q  309 aataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaa 355  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||    
T  5226847 aataacttgttaaaagacaccttcataaaatgtgtcttttagcaaaa 5226801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 299 - 356
Target Start/End: Original strand, 25671076 - 25671133
Alignment:
Q  299 atgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaac 356  Q
    ||||| ||||||||||||| ||||||||||||||||||||| |||||| |||||||||    
T  25671076 atgctcatagaataacttgctaaaagacaccttcataaaatatgtcttttagcaaaac 25671133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 299 - 355
Target Start/End: Complemental strand, 14463377 - 14463321
Alignment:
Q  299 atgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaa 355  Q
    ||||| ||||||||||||| ||||| |||||||||||||| ||||||||||||||||    
T  14463377 atgctcatagaataacttgctaaaaaacaccttcataaaaggtgtcttctagcaaaa 14463321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 294 - 357
Target Start/End: Original strand, 7336152 - 7336215
Alignment:
Q  294 aacatatgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||| ||||| ||||| ||| ||| ||||||||||||| |||||||||||||||||||||||||    
T  7336152 aacaaatgcttatagagtaatttgctaaaagacaccttaataaaatgtgtcttctagcaaaacc 7336215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 294 - 357
Target Start/End: Original strand, 25825392 - 25825455
Alignment:
Q  294 aacatatgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||| ||||| ||| ||||||||| |||||||||||||||||||| |||||||||| |||||||    
T  25825392 aacaaatgctcataaaataacttgctaaaagacaccttcataaaaggtgtcttctaacaaaacc 25825455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 294 - 357
Target Start/End: Original strand, 30414196 - 30414259
Alignment:
Q  294 aacatatgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||| ||||||||| ||||||||| ||||| |||||||||||||| |||| |||||||||||||    
T  30414196 aacaaatgctaatataataacttgctaaaaaacaccttcataaaaggtgtattctagcaaaacc 30414259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 305 - 355
Target Start/End: Complemental strand, 17168207 - 17168157
Alignment:
Q  305 atagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaa 355  Q
    ||||||||||||||||||||||||||||||||   ||||||||||||||||    
T  17168207 atagaataacttgttaaaagacaccttcataattggtgtcttctagcaaaa 17168157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 38509719 - 38509777
Alignment:
Q  299 atgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    ||||| |||| |||| ||| ||||||||||||||||||||||||||||||| |||||||    
T  38509719 atgcttataggataatttgctaaaagacaccttcataaaatgtgtcttctaacaaaacc 38509777  T

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Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 299 - 356
Target Start/End: Original strand, 1838760 - 1838817
Alignment:
Q  299 atgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaac 356  Q
    ||||| ||||||||||||  |||||||||| |||||||||||||||||||| ||||||    
T  1838760 atgctcatagaataacttactaaaagacactttcataaaatgtgtcttctaacaaaac 1838817  T

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Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 2964967 - 2965019
Alignment:
Q  305 atagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    ||||||||||||| || ||||||||||||||||  ||||||||||||||||||    
T  2964967 atagaataacttgctagaagacaccttcataaacggtgtcttctagcaaaacc 2965019  T

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Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 305 - 356
Target Start/End: Original strand, 1627779 - 1627830
Alignment:
Q  305 atagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaac 356  Q
    ||||||||||||| ||||||||| ||| |||||| |||||||||||||||||    
T  1627779 atagaataacttgctaaaagacatctttataaaaggtgtcttctagcaaaac 1627830  T

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Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 355
Target Start/End: Complemental strand, 47921613 - 47921562
Alignment:
Q  304 aatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaa 355  Q
    ||||| |||||||||||||| |||||||||||||| | ||||||||||||||    
T  47921613 aataggataacttgttaaaaaacaccttcataaaaggcgtcttctagcaaaa 47921562  T

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Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 357
Target Start/End: Original strand, 1469752 - 1469790
Alignment:
Q  319 taaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  1469752 taaaagacaccttcataaaaggtgtcttctagcaaaacc 1469790  T

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Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 17452995 - 17453053
Alignment:
Q  299 atgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    ||||| |||||||| |||| |||||||||||||||||||| |||||||| || ||||||    
T  17452995 atgctcatagaatagcttgctaaaagacaccttcataaaaagtgtcttcgagtaaaacc 17453053  T

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Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 355
Target Start/End: Complemental strand, 40461029 - 40460983
Alignment:
Q  309 aataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaa 355  Q
    ||||||||| |||||||||||||||||||| |||||||||| |||||    
T  40461029 aataacttgctaaaagacaccttcataaaaagtgtcttctatcaaaa 40460983  T

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Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 42470814 - 42470756
Alignment:
Q  299 atgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    ||||| ||||||||||||||||||  ||| |||||||||||||||||| ||| ||||||    
T  42470814 atgctcatagaataacttgttaaagcacatcttcataaaatgtgtcttataggaaaacc 42470756  T

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Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 352
Target Start/End: Complemental strand, 41146600 - 41146547
Alignment:
Q  299 atgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagca 352  Q
    ||||| ||||||||||||| ||||| |||| ||||||||| |||||||||||||    
T  41146600 atgctcatagaataacttggtaaaaaacactttcataaaaagtgtcttctagca 41146547  T

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Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 338
Target Start/End: Original strand, 43939546 - 43939590
Alignment:
Q  294 aacatatgctaatagaataacttgttaaaagacaccttcataaaa 338  Q
    |||| ||||| ||||||||||||| ||||||||||||||||||||    
T  43939546 aacaaatgctcatagaataacttgctaaaagacaccttcataaaa 43939590  T

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Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 357
Target Start/End: Complemental strand, 49659943 - 49659891
Alignment:
Q  305 atagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    ||||||||||||| ||||| |||||||||| ||| |||||||||| |||||||    
T  49659943 atagaataacttgctaaaaaacaccttcatgaaaggtgtcttctaacaaaacc 49659891  T

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Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 356
Target Start/End: Original strand, 30289073 - 30289120
Alignment:
Q  309 aataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaac 356  Q
    |||||||||||||||||| ||||||||||| ||||||| ||| |||||    
T  30289073 aataacttgttaaaagacgccttcataaaacgtgtcttttagtaaaac 30289120  T

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Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 357
Target Start/End: Complemental strand, 26842848 - 26842810
Alignment:
Q  319 taaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    |||||||||| ||||||||||||||||| ||||||||||    
T  26842848 taaaagacactttcataaaatgtgtcttatagcaaaacc 26842810  T

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Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 355
Target Start/End: Original strand, 30819618 - 30819668
Alignment:
Q  305 atagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaa 355  Q
    |||| |||| ||| ||||| |||||||||||||| ||||||||||||||||    
T  30819618 ataggataatttgctaaaaaacaccttcataaaaggtgtcttctagcaaaa 30819668  T

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Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 357
Target Start/End: Complemental strand, 14345743 - 14345694
Alignment:
Q  309 aataacttgttaaaagacaccttcat-aaaatgtgtcttctagcaaaacc 357  Q
    ||||| ||||||||||||||||| || |||| ||||||||||||||||||    
T  14345743 aataatttgttaaaagacacctttataaaaaggtgtcttctagcaaaacc 14345694  T

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Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 343
Target Start/End: Original strand, 24992959 - 24993008
Alignment:
Q  294 aacatatgctaatagaataacttgttaaaagacaccttcataaaatgtgt 343  Q
    |||| ||||||||| ||||| ||| |||||||||||||||||||| ||||    
T  24992959 aacaaatgctaatataataatttgctaaaagacaccttcataaaaggtgt 24993008  T

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Target: scaffold0004 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 299 - 356
Target Start/End: Original strand, 121732 - 121789
Alignment:
Q  299 atgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaac 356  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  121732 atgctcatagaataacttgttaaaagacaccttcataaaatgtgttttatagcaaaac 121789  T

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Target: scaffold0001 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 392463 - 392405
Alignment:
Q  299 atgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    ||||| ||||||||||||| ||||||||| |||||||||| ||||||||||||||||||    
T  392463 atgctcatagaataacttgctaaaagacatcttcataaaaggtgtcttctagcaaaacc 392405  T

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Target: scaffold0093 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 299 - 353
Target Start/End: Complemental strand, 9209 - 9155
Alignment:
Q  299 atgctaatagaataacttgttaaaagacaccttcataaaatgtgtcttctagcaa 353  Q
    ||||| ||||||||||||| ||||| |||||||||||||| ||||||||||||||    
T  9209 atgctcatagaataacttgctaaaatacaccttcataaaaggtgtcttctagcaa 9155  T

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Target: scaffold0002 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 351
Target Start/End: Complemental strand, 478361 - 478315
Alignment:
Q  305 atagaataacttgttaaaagacaccttcataaaatgtgtcttctagc 351  Q
    ||||||||||||| ||||| |||||||||||||| ||||||||||||    
T  478361 atagaataacttgctaaaaaacaccttcataaaaagtgtcttctagc 478315  T

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Target: scaffold0007 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 354
Target Start/End: Complemental strand, 77074 - 77027
Alignment:
Q  307 agaataacttgttaaaagacaccttcataaaatgtgtcttctagcaaa 354  Q
    ||||||||||| ||||| |||||||||||||  |||||||||||||||    
T  77074 agaataacttgctaaaaaacaccttcataaatagtgtcttctagcaaa 77027  T

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Target: scaffold0112 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 356
Target Start/End: Original strand, 24631 - 24677
Alignment:
Q  310 ataacttgttaaaagacaccttcataaaatgtgtcttctagcaaaac 356  Q
    |||||||| || |||||||||||||||||  ||||||||||||||||    
T  24631 ataacttgctacaagacaccttcataaaaaatgtcttctagcaaaac 24677  T

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Target: scaffold0112; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 356
Target Start/End: Original strand, 35956 - 35993
Alignment:
Q  319 taaaagacaccttcataaaatgtgtcttctagcaaaac 356  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  35956 taaaagacaccttcataaaagttgtcttctagcaaaac 35993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 357
Target Start/End: Original strand, 8581 - 8623
Alignment:
Q  315 ttgttaaaagacaccttcataaaatgtgtcttctagcaaaacc 357  Q
    ||||||||||||| |||||||||| | ||||||||||||||||    
T  8581 ttgttaaaagacaacttcataaaaggcgtcttctagcaaaacc 8623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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