View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21370_low_8 (Length: 309)
Name: NF21370_low_8
Description: NF21370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21370_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 305
Target Start/End: Original strand, 54905291 - 54905578
Alignment:
| Q |
18 |
agatagttgcaagcaccgtgtataacactcttcatcaccttctctatatcatcatttactgacaacactatatatcacacacaaaaaatcgtcacttaga |
117 |
Q |
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| T |
54905291 |
agatagttgcaagcaccgtgtataacactcttcatcaccttctctatatcatcatttactgacaacactatatatcacacacaaaaaatcgtcacttaga |
54905390 |
T |
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| Q |
118 |
tactatctgaataaaagaagtgtatataaattaggtaaacaatacagattttaagacaaaggtgtgtgagcttactgatgaaaggtaaatccatttcaag |
217 |
Q |
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| T |
54905391 |
tacaatctgaatataagaagtggatcttaattaggtaaacaatacagattttaagacaaaggtgtgtgagcttactgatgaaaggtaaatccatttcaag |
54905490 |
T |
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| Q |
218 |
tccagcttgctcaaggagcttgaagccatccatgtctggcatgctaacatcactaattactaggtcaaacatatccttcttctctctc |
305 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
54905491 |
tccaacttgctcaaggagcttgaagccatccatgtctggcatgctaacatcactaattactaggtcaaacatatccttcttttctctc |
54905578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 48 - 292
Target Start/End: Original strand, 54889271 - 54889516
Alignment:
| Q |
48 |
ttcatcaccttctctatatcatcatttactgacaacactatatatcacacacaaaaaatcgtcactta--gatactatctgaataaaagaagtgtatata |
145 |
Q |
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| T |
54889271 |
ttcatcaccctctctctatcatcatttcctgacaacactatatcacacaaa-aaaaaatcatcacttaaagacactatctgaatataagaagtgaatctt |
54889369 |
T |
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| Q |
146 |
aattaggtaaacaatacagattttaagacaaaggtgtgtgagcttactgatgaaaggtaaatccatttcaagtccagcttgctcaaggagcttgaagcca |
245 |
Q |
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| T |
54889370 |
agttagctgaataataaacatgctaaaacaaaggtatgtgagcttactgatgaagggtaggtctatttcaagtccaacttgctcaaggagcttgaatcca |
54889469 |
T |
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| Q |
246 |
tccatgtctggcatgctaacatcactaattactaggtcaaacatatc |
292 |
Q |
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||||| ||||||||||| |||||||||||||| |||||||||||||| |
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| T |
54889470 |
tccatttctggcatgcttacatcactaattacaaggtcaaacatatc |
54889516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 100 - 289
Target Start/End: Original strand, 54894941 - 54895136
Alignment:
| Q |
100 |
aaaaaatcgtcactta--gatactatctgaataaaagaagtgtatataaattaggtaaacaatacagattttaagacaa----aggtgtgtgagcttact |
193 |
Q |
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| T |
54894941 |
aaaaaatcatcacttaaagattctatatgaatataagaagtggatcttaattagctgaataatacacatgttaagacaatttaaggtttgttagcttact |
54895040 |
T |
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| Q |
194 |
gatgaaaggtaaatccatttcaagtccagcttgctcaaggagcttgaagccatccatgtctggcatgctaacatcactaattactaggtcaaacat |
289 |
Q |
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| T |
54895041 |
aatgaaaggcaggtccatctcaagtccaacttgctcaaggagcttgaaaccatccatttctggcatgtttacatcactaattataagatcaaacat |
54895136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 188 - 286
Target Start/End: Complemental strand, 2888631 - 2888533
Alignment:
| Q |
188 |
cttactgatgaaaggtaaatccatttcaagtccagcttgctcaaggagcttgaagccatccatgtctggcatgctaacatcactaattactaggtcaaa |
286 |
Q |
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|||||| |||| |||||||||||| ||||||||| | ||||||| ||||| || ||||||||||||||||| ||||| || |||||||||||||| |
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| T |
2888631 |
cttacttatgacaggtaaatccatctcaagtccaacaagctcaagaagcttaaatccatccatgtctggcatatgaacattgctgattactaggtcaaa |
2888533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 286
Target Start/End: Complemental strand, 2904734 - 2904636
Alignment:
| Q |
188 |
cttactgatgaaaggtaaatccatttcaagtccagcttgctcaaggagcttgaagccatccatgtctggcatgctaacatcactaattactaggtcaaa |
286 |
Q |
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| T |
2904734 |
cttactgatgacaggtaggtccatctcaagtccaacaagctcaagaagcttaaatccatccatgtctggcatatgaacattgctgattactaggtcaaa |
2904636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 286
Target Start/End: Complemental strand, 2893226 - 2893128
Alignment:
| Q |
188 |
cttactgatgaaaggtaaatccatttcaagtccagcttgctcaaggagcttgaagccatccatgtctggcatgctaacatcactaattactaggtcaaa |
286 |
Q |
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| T |
2893226 |
cttactgatgacaggtaggtccatctcaagtccaacaagctcaagaagcttaaatccgtccatgtctggcatatgaacattgctgattactaggtcaaa |
2893128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 286
Target Start/End: Original strand, 48870467 - 48870546
Alignment:
| Q |
207 |
tccatttcaagtccagcttgctcaaggagcttgaagccatccatgtctggcatgctaacatcactaattactaggtcaaa |
286 |
Q |
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||||| ||||||||| | ||||||| ||||| || ||||||||||||||||| ||||| ||| |||||||||||||| |
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| T |
48870467 |
tccatctcaagtccaacaagctcaagaagcttaaatccatccatgtctggcatatgaacattactgattactaggtcaaa |
48870546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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