View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21371_high_2 (Length: 396)
Name: NF21371_high_2
Description: NF21371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21371_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 6 - 378
Target Start/End: Complemental strand, 35289661 - 35289287
Alignment:
| Q |
6 |
agcaacacagaacaagaagcattgttcttccgatagtggcaat--ttgccctacgaaaattcacagctgctttgactctagtccttgaaccaaagattga |
103 |
Q |
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| T |
35289661 |
agcaacacaaaacaagaagcattgttcttccgatagtggcaacacttgccctacgaaaattcacagctgctttgactctagtccttgaaccaaagattga |
35289562 |
T |
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| Q |
104 |
taaattaatcataagtatgaagcctactaaacaaaacaatagatttaaaggatgcttaatttttcaagtttgagtttctataagaattccatatattggt |
203 |
Q |
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| T |
35289561 |
taaattaatcataagtatgaagcctactaaacaaaacaatagatttaaaggatgcttgatttttcaagtttgagtttctataagaattccacatattggt |
35289462 |
T |
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| Q |
204 |
taaattgtaatgcttcggctgcatgatgcagcagaaaaatacaaagcaccgtgtcgaagtatgtgcttgcatgctcttcaacattgcatgtataaaccaa |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
35289461 |
taaattgtaatgcttcggctgcatgatgcagcagaaaaatacaaagcaccgtgtcaaagtatgtgcttgcatgctcttcaagattgcatgtataaaccaa |
35289362 |
T |
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| Q |
304 |
agcttgataattttcatcacaaaaggaaaacactttacacttcccttatcgccgatctgattcactgctactcat |
378 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35289361 |
agcttgataattttcatcacaaaaggaaaacactttacacttcccttatcgccgatctgattcactgctactcat |
35289287 |
T |
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