View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21371_low_1 (Length: 709)

Name: NF21371_low_1
Description: NF21371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21371_low_1
NF21371_low_1
[»] chr6 (15 HSPs)
chr6 (513-690)||(898144-898321)
chr6 (44-255)||(17951955-17952166)
chr6 (51-255)||(35175783-35175987)
chr6 (86-251)||(34343847-34344004)
chr6 (516-576)||(1194549-1194609)
chr6 (131-255)||(34345291-34345415)
chr6 (150-255)||(17950561-17950666)
chr6 (164-213)||(24662522-24662571)
chr6 (131-254)||(4289419-4289542)
chr6 (118-213)||(13613569-13613664)
chr6 (166-257)||(4641353-4641444)
chr6 (516-576)||(1183793-1183853)
chr6 (150-240)||(3018451-3018541)
chr6 (53-114)||(10568561-10568622)
chr6 (150-258)||(29077325-29077433)
[»] chr4 (33 HSPs)
chr4 (44-255)||(5484540-5484751)
chr4 (44-256)||(43779780-43779992)
chr4 (44-255)||(39921494-39921705)
chr4 (44-252)||(32652102-32652310)
chr4 (44-255)||(39083639-39083850)
chr4 (51-250)||(39189387-39189586)
chr4 (44-246)||(44994200-44994402)
chr4 (44-261)||(42880674-42880885)
chr4 (150-255)||(5486038-5486143)
chr4 (132-247)||(6999268-6999383)
chr4 (93-215)||(13450943-13451064)
chr4 (131-212)||(15450383-15450464)
chr4 (132-216)||(25995080-25995164)
chr4 (131-254)||(32653598-32653721)
chr4 (150-255)||(39922993-39923098)
chr4 (132-213)||(13450272-13450353)
chr4 (150-255)||(44558512-44558617)
chr4 (53-117)||(11255841-11255905)
chr4 (166-257)||(47941809-47941900)
chr4 (150-247)||(42879283-42879380)
chr4 (150-247)||(44992816-44992913)
chr4 (53-114)||(51012087-51012148)
chr4 (132-255)||(35996063-35996186)
chr4 (55-117)||(4519535-4519597)
chr4 (142-256)||(35997745-35997859)
chr4 (182-255)||(2350558-2350631)
chr4 (150-247)||(2828397-2828494)
chr4 (150-255)||(10372725-10372830)
chr4 (150-247)||(39085138-39085235)
chr4 (142-247)||(44792942-44793047)
chr4 (58-114)||(2827566-2827622)
chr4 (58-114)||(35996225-35996281)
chr4 (58-114)||(51041837-51041893)
[»] chr7 (42 HSPs)
chr7 (44-256)||(4322485-4322697)
chr7 (44-255)||(45463670-45463881)
chr7 (44-256)||(48303562-48303774)
chr7 (44-255)||(34690995-34691206)
chr7 (173-250)||(30109708-30109785)
chr7 (132-240)||(34785080-34785188)
chr7 (131-213)||(34692715-34692797)
chr7 (257-313)||(21026961-21027017)
chr7 (131-215)||(48302191-48302275)
chr7 (150-256)||(30108564-30108670)
chr7 (150-247)||(46810713-46810810)
chr7 (257-309)||(28172241-28172293)
chr7 (121-192)||(29996504-29996575)
chr7 (55-114)||(38613625-38613684)
chr7 (132-255)||(46996703-46996826)
chr7 (164-255)||(47341719-47341810)
chr7 (132-190)||(11682846-11682904)
chr7 (164-258)||(38613514-38613608)
chr7 (163-216)||(48704248-48704302)
chr7 (202-247)||(23955323-23955368)
chr7 (150-247)||(36762666-36762763)
chr7 (257-294)||(40346071-40346108)
chr7 (166-257)||(8423316-8423407)
chr7 (121-192)||(20478105-20478176)
chr7 (55-114)||(23953967-23954026)
chr7 (132-247)||(33038798-33038913)
chr7 (58-117)||(47341588-47341647)
chr7 (119-192)||(56393-56466)
chr7 (53-114)||(1546449-1546510)
chr7 (150-247)||(4321046-4321143)
chr7 (142-247)||(8421424-8421529)
chr7 (142-247)||(35342433-35342538)
chr7 (166-255)||(35344325-35344414)
chr7 (150-247)||(45465170-45465267)
chr7 (53-114)||(46439431-46439492)
chr7 (150-247)||(46994668-46994765)
chr7 (118-158)||(1546384-1546424)
chr7 (54-106)||(2492496-2492548)
chr7 (119-247)||(27955378-27955506)
chr7 (53-117)||(30940326-30940390)
chr7 (57-113)||(35693275-35693331)
chr7 (58-114)||(40784508-40784564)
[»] chr2 (26 HSPs)
chr2 (44-256)||(28246662-28246874)
chr2 (44-250)||(11022926-11023131)
chr2 (292-495)||(31638635-31638834)
chr2 (51-260)||(38148490-38148700)
chr2 (53-247)||(11315258-11315451)
chr2 (257-379)||(19271242-19271366)
chr2 (166-250)||(39561-39645)
chr2 (135-219)||(38149986-38150069)
chr2 (118-245)||(39664755-39664882)
chr2 (150-247)||(28248161-28248258)
chr2 (118-190)||(17946159-17946231)
chr2 (118-192)||(7744106-7744180)
chr2 (166-247)||(41144-41225)
chr2 (150-247)||(11021541-11021638)
chr2 (150-255)||(37417273-37417378)
chr2 (150-250)||(25619665-25619765)
chr2 (121-191)||(37020572-37020642)
chr2 (57-114)||(6797669-6797726)
chr2 (53-114)||(10716804-10716865)
chr2 (53-114)||(14389005-14389066)
chr2 (166-255)||(15372499-15372588)
chr2 (53-114)||(17946256-17946317)
chr2 (64-117)||(37417432-37417485)
chr2 (166-255)||(41706539-41706628)
chr2 (53-117)||(40560382-40560446)
chr2 (53-117)||(42519126-42519190)
[»] chr1 (30 HSPs)
chr1 (44-256)||(5783363-5783575)
chr1 (118-245)||(34778125-34778252)
chr1 (132-255)||(42134482-42134605)
chr1 (121-192)||(46583546-46583617)
chr1 (119-191)||(33602632-33602704)
chr1 (164-240)||(34041828-34041904)
chr1 (257-313)||(38586157-38586213)
chr1 (58-117)||(42134641-42134700)
chr1 (150-256)||(18183962-18184068)
chr1 (53-114)||(2869741-2869802)
chr1 (53-114)||(26225455-26225516)
chr1 (53-114)||(34778040-34778101)
chr1 (121-245)||(4855956-4856080)
chr1 (53-117)||(15104600-15104664)
chr1 (54-114)||(18183846-18183906)
chr1 (53-117)||(27087441-27087505)
chr1 (121-192)||(9121658-9121729)
chr1 (58-117)||(45380890-45380949)
chr1 (150-256)||(5784853-5784959)
chr1 (260-333)||(26765376-26765450)
chr1 (182-256)||(27940607-27940681)
chr1 (150-256)||(33679258-33679364)
chr1 (53-114)||(4855868-4855929)
chr1 (150-247)||(11152553-11152650)
chr1 (142-247)||(27952478-27952583)
chr1 (150-247)||(31803686-31803783)
chr1 (182-255)||(33685299-33685372)
chr1 (53-113)||(3013371-3013431)
chr1 (58-114)||(46638713-46638769)
chr1 (118-190)||(51121970-51122042)
[»] chr8 (22 HSPs)
chr8 (44-256)||(40020548-40020760)
chr8 (44-249)||(28433629-28433834)
chr8 (131-255)||(23811532-23811656)
chr8 (150-255)||(32822361-32822466)
chr8 (123-245)||(27691164-27691286)
chr8 (131-247)||(9184391-9184507)
chr8 (53-117)||(13108258-13108322)
chr8 (53-117)||(38547386-38547450)
chr8 (166-257)||(31201178-31201269)
chr8 (132-255)||(42897775-42897898)
chr8 (53-114)||(5036611-5036672)
chr8 (53-117)||(8609709-8609773)
chr8 (132-232)||(11031452-11031552)
chr8 (131-183)||(28432293-28432345)
chr8 (58-117)||(42897680-42897739)
chr8 (118-216)||(8609794-8609892)
chr8 (58-112)||(8654663-8654717)
chr8 (118-192)||(13108343-13108417)
chr8 (118-192)||(38547291-38547365)
chr8 (53-103)||(42941947-42941997)
chr8 (150-247)||(31823462-31823559)
chr8 (150-247)||(40019164-40019261)
[»] chr3 (31 HSPs)
chr3 (44-255)||(41944576-41944785)
chr3 (132-216)||(30501156-30501240)
chr3 (135-247)||(40963369-40963481)
chr3 (131-255)||(41946066-41946190)
chr3 (121-192)||(44794270-44794341)
chr3 (121-192)||(3152228-3152299)
chr3 (163-258)||(48635372-48635467)
chr3 (150-260)||(23774147-23774257)
chr3 (55-117)||(31887355-31887417)
chr3 (53-117)||(2226074-2226138)
chr3 (119-255)||(40508899-40509035)
chr3 (121-192)||(2660275-2660346)
chr3 (132-255)||(48633877-48634000)
chr3 (53-114)||(7884795-7884856)
chr3 (58-115)||(23888678-23888735)
chr3 (150-247)||(45897058-45897155)
chr3 (164-257)||(51454283-51454376)
chr3 (53-114)||(53190681-53190742)
chr3 (53-117)||(30599839-30599903)
chr3 (54-106)||(33113083-33113135)
chr3 (132-255)||(31887453-31887576)
chr3 (118-245)||(53190766-53190893)
chr3 (53-111)||(35905634-35905692)
chr3 (53-111)||(54898601-54898659)
chr3 (53-114)||(17515472-17515533)
chr3 (53-114)||(23293091-23293152)
chr3 (150-247)||(23887206-23887303)
chr3 (150-247)||(33111849-33111946)
chr3 (150-255)||(33113199-33113304)
chr3 (53-114)||(41977911-41977972)
chr3 (58-106)||(48634051-48634099)
[»] chr5 (26 HSPs)
chr5 (44-255)||(42620676-42620887)
chr5 (131-247)||(1344781-1344897)
chr5 (150-255)||(38596868-38596973)
chr5 (150-247)||(32089911-32090008)
chr5 (164-257)||(43318093-43318186)
chr5 (53-117)||(17574476-17574540)
chr5 (131-212)||(1343264-1343345)
chr5 (53-114)||(7268004-7268065)
chr5 (150-247)||(18726573-18726670)
chr5 (150-247)||(33257746-33257843)
chr5 (163-240)||(38176647-38176724)
chr5 (163-240)||(38203871-38203948)
chr5 (163-247)||(40330514-40330598)
chr5 (118-245)||(17574328-17574455)
chr5 (58-117)||(18728508-18728567)
chr5 (121-192)||(29621771-29621842)
chr5 (118-245)||(30468267-30468394)
chr5 (58-117)||(32087673-32087732)
chr5 (132-255)||(35395333-35395456)
chr5 (58-113)||(35395494-35395549)
chr5 (121-192)||(42473597-42473668)
chr5 (135-213)||(6116868-6116946)
chr5 (125-186)||(2854321-2854382)
chr5 (53-89)||(27349333-27349369)
chr5 (166-258)||(32835873-32835965)
chr5 (150-258)||(42619286-42619394)
[»] scaffold0058 (2 HSPs)
scaffold0058 (121-192)||(3357-3428)
scaffold0058 (121-192)||(4529-4600)
[»] scaffold0477 (1 HSPs)
scaffold0477 (166-257)||(6669-6760)
[»] scaffold1454 (1 HSPs)
scaffold1454 (53-117)||(1421-1485)
[»] scaffold0564 (1 HSPs)
scaffold0564 (53-114)||(8422-8483)


Alignment Details
Target: chr6 (Bit Score: 174; Significance: 3e-93; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 513 - 690
Target Start/End: Original strand, 898144 - 898321
Alignment:
Q  513 gggacattcaaaaagtcttgcaatgcactagtgagggtaaattttgatgatccctctttcgctatacccaaaactaaaggcattgttcaactcatcgata 612  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  898144 gggacattcaaaaagtcttgcaatgcactagtgagggtaaattttgatgatccctctttcgctatacccaaaactaaaggcattgttcaactcatcgata 898243  T
Q  613 gttgatattctcttgggatcaaaaacaaaatgtagcactcttaattttgaaaccctctatactcagctacctcaaacc 690  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  898244 gttgatattctgttgggatcaaaaacaaaatgtagcactcttaattttgaaaccctctatactcagctacctcaaacc 898321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 44 - 255
Target Start/End: Original strand, 17951955 - 17952166
Alignment:
Q  44 ttttcgcattttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacacagcacactaacggaccttttggacggaggg 143  Q
    |||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17951955 ttttcgtattttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagcacactaacggaccttttggacggaggg 17952054  T
Q  144 acgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaatt 243  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| | |||| |||||||||||||||||||    
T  17952055 acgaaattgatggacgtcaaacaaattcagggactattttgatatttcgttaaatttggggacgaatttggccgacccctgaaaattcagggacgaaatt 17952154  T
Q  244 gatggtttactc 255  Q
    ||||||| ||||    
T  17952155 gatggttcactc 17952166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 51 - 255
Target Start/End: Original strand, 35175783 - 35175987
Alignment:
Q  51 attttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacacagcacactaacggaccttttggacggagggacgaaat 150  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  35175783 attttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagcacactatcagaccttttggacggagggacgaaat 35175882  T
Q  151 tgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatggtt 250  Q
    |||||||| ||||||||||||||||||||||||||||||||||| |||| || ||||||||||||| |||||| |||||||| |||||||||||||||||    
T  35175883 tgatggacgtcaaacaaattcagggactattttgatatttcgttaaatttggagacgaatttggccgatccctgaaaattcaaggacgaaattgatggtt 35175982  T
Q  251 tactc 255  Q
     ||||    
T  35175983 cactc 35175987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 86 - 251
Target Start/End: Complemental strand, 34344004 - 34343847
Alignment:
Q  86 cctttttcccacgtgtacaagccaacacagcacactaacggaccttttggacggagggacgaaattgatggacatcaaac-aaattcagggactattttg 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||         |    
T  34344004 cctttttcccacgtgtacaagccaacacagcacactaacggaccttttggacggagggacgaaattgatggacgtcaaacaaaattgagg---------g 34343914  T
Q  185 atatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatggttt 251  Q
    |||||||||| |||||| |||| |||||| ||||| | |||||||||| ||||||||||||||||||    
T  34343913 atatttcgttaaattggaggacaaatttgaccaattcttaaaaattcaaggacgaaattgatggttt 34343847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 516 - 576
Target Start/End: Original strand, 1194549 - 1194609
Alignment:
Q  516 acattcaaaaagtcttgcaatgcactagtgagggtaaattttgatgatccctctttcgcta 576  Q
    ||||||||||||| || |||||||||||| |||||||||||||||||||||||||| ||||    
T  1194549 acattcaaaaagttttccaatgcactagtcagggtaaattttgatgatccctcttttgcta 1194609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 131 - 255
Target Start/End: Original strand, 34345291 - 34345415
Alignment:
Q  131 tttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaatt 230  Q
    ||||||||||||||| |||||||  | |||   |||||||||||||||||||||||||||| || ||||| |||||| |||||| | |||  |  |||||    
T  34345291 tttggacggagggacaaaattgacaggcattttacaaattcagggactattttgatatttcattaaattgagggacggatttggtcgatcagtgcaaatt 34345390  T
Q  231 cagggacgaaattgatggtttactc 255  Q
    ||||||| || |||||| |||||||    
T  34345391 cagggaccaagttgatgatttactc 34345415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 255
Target Start/End: Complemental strand, 17950666 - 17950561
Alignment:
Q  150 ttgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatggt 249  Q
    ||||| |||||  |||||||||||||| ||  |||||||||||   ||||| |||||||| |||||| | || |||||||||||||| ||||||||||||    
T  17950666 ttgattgacatttaacaaattcagggattaaattgatatttcgcataattgagggacgaagttggccgacccgtaaaaattcagggatgaaattgatggt 17950567  T
Q  250 ttactc 255  Q
    | ||||    
T  17950566 tcactc 17950561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 24662571 - 24662522
Alignment:
Q  164 acaaattcagggactattttgatatttcgttcaattgggggacgaatttg 213  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  24662571 acaaattcatggactattttgatatttcgttaaattgggggacgaatttg 24662522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 254
Target Start/End: Complemental strand, 4289542 - 4289419
Alignment:
Q  131 tttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaatt 230  Q
    ||||||||||||||| |||||||  | |||   ||||||| |||||||||||||||||||| || ||||| |||||||||||| || |||  |  |||||    
T  4289542 tttggacggagggacaaaattgacaggcattttacaaatttagggactattttgatatttcattaaattgagggacgaatttgaccgatcagtgcaaatt 4289443  T
Q  231 cagggacgaaattgatggtttact 254  Q
    |||| || || |||||| ||||||    
T  4289442 caggaaccaagttgatgatttact 4289419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 213
Target Start/End: Original strand, 13613569 - 13613664
Alignment:
Q  118 cactaacggaccttttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttg 213  Q
    |||||| ||||||||||||||||||||| || ||||||||| ||    |||||||||||||| ||||||||||||   ||||  ||||||||||||    
T  13613569 cactaatggaccttttggacggagggactaatttgatggacgtctgtaaaattcagggactaatttgatatttcgcaaaattcagggacgaatttg 13613664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 166 - 257
Target Start/End: Complemental strand, 4641444 - 4641353
Alignment:
Q  166 aaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatggtttactcga 257  Q
    ||||||||||| ||  ||||||||||    ||||| ||||||||||||||| | || | ||||||||||||| |||||||||||| ||||||    
T  4641444 aaattcagggattaaattgatatttcacataattgagggacgaatttggccgacccgtgaaaattcagggactaaattgatggttcactcga 4641353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 516 - 576
Target Start/End: Original strand, 1183793 - 1183853
Alignment:
Q  516 acattcaaaaagtcttgcaatgcactagtgagggtaaattttgatgatccctctttcgcta 576  Q
    ||||||||||||| || ||||||| |||| ||| |||||||| ||||||||||||| ||||    
T  1183793 acattcaaaaagttttccaatgcattagtcaggttaaattttcatgatccctcttttgcta 1183853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 150 - 240
Target Start/End: Original strand, 3018451 - 3018541
Alignment:
Q  150 ttgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaa 240  Q
    ||||||||| ||  ||||||||||||||||  |||||||||||   ||||| |||||||| |||||| |  | | ||||||||||||||||    
T  3018451 ttgatggacgtctgacaaattcagggactaagttgatatttcgcataattgagggacgaagttggccgacgcgtgaaaattcagggacgaa 3018541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 114
Target Start/End: Complemental strand, 10568622 - 10568561
Alignment:
Q  53 tttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacaca 114  Q
    |||||||||| ||||||| ||||||||||||| |||| ||  |||||||||| | |||||||    
T  10568622 tttccatcaaattagtccttgtacatgtggctgccttgttgacacgtgtacatgacaacaca 10568561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 150 - 258
Target Start/End: Complemental strand, 29077433 - 29077325
Alignment:
Q  150 ttgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatggt 249  Q
    ||||||||| ||  |||||||||||||  |  |||| ||||||   ||||| ||||| ||||||||| |  | | |||||||||||||||| ||||||||    
T  29077433 ttgatggacgtctgacaaattcagggatgaaattgaaatttcgcataattgagggactaatttggccgacgcgtgaaaattcagggacgaatttgatggt 29077334  T
Q  250 ttactcgat 258  Q
    | |||||||    
T  29077333 tcactcgat 29077325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 172; Significance: 5e-92; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 44 - 255
Target Start/End: Complemental strand, 5484751 - 5484540
Alignment:
Q  44 ttttcgcattttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacacagcacactaacggaccttttggacggaggg 143  Q
    |||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5484751 ttttcgtattttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagcacactaacggaccttttggacggaggg 5484652  T
Q  144 acgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaatt 243  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| | ||||||||||||| ||||||||||    
T  5484651 acgaaattgatggacgtcaaacaaattcagggactattttgatatttcgttaaatttggggacgaatttggccgacccctaaaaattcatggacgaaatt 5484552  T
Q  244 gatggtttactc 255  Q
    ||||||| ||||    
T  5484551 gatggttcactc 5484540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 44 - 256
Target Start/End: Original strand, 43779780 - 43779992
Alignment:
Q  44 ttttcgcattttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacacagcacactaacggaccttttggacggaggg 143  Q
    |||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43779780 ttttcgtattttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagcacactaacggaccttttggacggaggg 43779879  T
Q  144 acgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaatt 243  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| | |||| |||||||||||||||||||    
T  43779880 acgaaattgatggacgtcaaacaaattcagggactattttgatatttcgttaaatttggggacgaatttggccgacccctgaaaattcagggacgaaatt 43779979  T
Q  244 gatggtttactcg 256  Q
    || |||| |||||    
T  43779980 gaaggttcactcg 43779992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 44 - 255
Target Start/End: Complemental strand, 39921705 - 39921494
Alignment:
Q  44 ttttcgcattttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacacagcacactaacggaccttttggacggaggg 143  Q
    |||||| ||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  39921705 ttttcgtattttccatcaatttagtccctgtacacgtggctttctttttcccacatgtacaagccaacacagcacactaacggaccttttggacggaggg 39921606  T
Q  144 acgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaatt 243  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| | |||| |||||||||||||||||||    
T  39921605 acgaaattgatggacgtcaaacaaattcagggactattttgatatttcgttaaatttggggacgaatttggccgacccctgaaaattcagggacgaaatt 39921506  T
Q  244 gatggtttactc 255  Q
    ||||||| ||||    
T  39921505 gatggttcactc 39921494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 44 - 252
Target Start/End: Complemental strand, 32652310 - 32652102
Alignment:
Q  44 ttttcgcattttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacacagcacactaacggaccttttggacggaggg 143  Q
    |||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  32652310 ttttcgtattttccatcaatttagtccatgtacacgtggcttcctttttcccacgtgtataagccaacacagcacactaacggaccttttggacggaggg 32652211  T
Q  144 acgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaatt 243  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| | |||| ||||||||| |||||||||    
T  32652210 acgaaattgatggacgtcaaacaaattcaaggactattttgatatttcgttaaattgggggacgaatttggccgaaccctgaaaattcagtgacgaaatt 32652111  T
Q  244 gatggttta 252  Q
    |||||||||    
T  32652110 gatggttta 32652102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 44 - 255
Target Start/End: Complemental strand, 39083850 - 39083639
Alignment:
Q  44 ttttcgcattttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacacagcacactaacggaccttttggacggaggg 143  Q
    |||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  39083850 ttttcgtattttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacaacacactaacggaccttttggacggaggg 39083751  T
Q  144 acgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaatt 243  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||| | |||| |||||||||||||||||||    
T  39083750 acgaaattgatggacgtcaaacaaattcagggactattttgatatttcgttaaatttagggacgaatttggccgacccctgaaaattcagggacgaaatt 39083651  T
Q  244 gatggtttactc 255  Q
    ||||||| ||||    
T  39083650 gatggttcactc 39083639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 160; E-Value: 7e-85
Query Start/End: Original strand, 51 - 250
Target Start/End: Complemental strand, 39189586 - 39189387
Alignment:
Q  51 attttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacacagcacactaacggaccttttggacggagggacgaaat 150  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  39189586 attttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacaacacattaacggaccttttggacggagggacgaaat 39189487  T
Q  151 tgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatggtt 250  Q
    |||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| | |||| ||||||||||||||||||||||||||    
T  39189486 tgatggacgtcaaacaaattcagggactattttgatatttcgttaaatttggggacgaatttggccgacccctgaaaattcagggacgaaattgatggtt 39189387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 44 - 246
Target Start/End: Original strand, 44994200 - 44994402
Alignment:
Q  44 ttttcgcattttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacacagcacactaacggaccttttggacggaggg 143  Q
    |||||| |||||||||||||||||||||||||||  || ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  44994200 ttttcgtattttccatcaatttagtccctgtacacatgactttctttttcccacgtgtacaagccaacacagcacactaacggaccttttggatggaggg 44994299  T
Q  144 acgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaatt 243  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| | |||| |||||| ||||| ||||||    
T  44994300 acgaaattgatggacgtcaaacaaattcagggactattttgatatttcgttaaatttggggacgaatttggccgacccctgaaaatttagggatgaaatt 44994399  T
Q  244 gat 246  Q
    |||    
T  44994400 gat 44994402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 44 - 261
Target Start/End: Original strand, 42880674 - 42880885
Alignment:
Q  44 ttttcgcattttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacacagcacactaacggaccttttggacggaggg 143  Q
    |||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||      ||||    
T  42880674 ttttcgtattttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagtcaacacagcacactaacggacctttt------aggg 42880767  T
Q  144 acgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaatt 243  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| | |||| ||||||||||||| |||||    
T  42880768 acgaaattgatggacgtcaaacaaattcagggactattttgatatttcgttaaatttggggacgaatttggccgacccctgaaaattcagggacaaaatt 42880867  T
Q  244 gatggtttactcgatcta 261  Q
    ||||||| |||| |||||    
T  42880868 gatggttcactctatcta 42880885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 150 - 255
Target Start/End: Original strand, 5486038 - 5486143
Alignment:
Q  150 ttgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatggt 249  Q
    ||||| |||||  |||||||||||||||||||||||||||||||| ||||  |||| |||||||||| | ||||||||||||||||||||||||||||||    
T  5486038 ttgattgacatttaacaaattcagggactattttgatatttcgttaaatttagggatgaatttggccgacccctaaaaattcagggacgaaattgatggt 5486137  T
Q  250 ttactc 255  Q
    | ||||    
T  5486138 tcactc 5486143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 132 - 247
Target Start/End: Original strand, 6999268 - 6999383
Alignment:
Q  132 ttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattc 231  Q
    |||||||||||||| |||||||| || ||   |||||||||| ||||||||||||||||| || |||||  |||||||||||||| || | |  ||||||    
T  6999268 ttggacggagggactaaattgattgatattttacaaattcagagactattttgatatttcattaaattgaaggacgaatttggccgattcgtgcaaattc 6999367  T
Q  232 agggacgaaattgatg 247  Q
    | ||||||||||||||    
T  6999368 aaggacgaaattgatg 6999383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 93 - 215
Target Start/End: Original strand, 13450943 - 13451064
Alignment:
Q  93 cccacgtgtacaagccaacacagcacactaacggaccttttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttcg 192  Q
    |||||||||||||| ||||||| ||   |||| || | |||||| |||||||| |  ||||||||| ||  | ||||||| |||||||||||||||||||    
T  13450943 cccacgtgtacaagacaacacaacatg-taacagagcatttggatggagggaccattttgatggacgtctgataaattcaaggactattttgatatttcg 13451041  T
Q  193 ttcaattgggggacgaatttggc 215  Q
    || ||||||||||||||||||||    
T  13451042 ttaaattgggggacgaatttggc 13451064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 131 - 212
Target Start/End: Original strand, 15450383 - 15450464
Alignment:
Q  131 tttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaattt 212  Q
    ||||||||||||||| ||||||| | ||||   ||||||||||||||||||||||||||||||| ||||| ||||| |||||    
T  15450383 tttggacggagggacaaaattgacgaacattttacaaattcagggactattttgatatttcgttaaattgagggacaaattt 15450464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 132 - 216
Target Start/End: Original strand, 25995080 - 25995164
Alignment:
Q  132 ttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggcc 216  Q
    |||||||||||||  |||||||| |||||   ||||||||||| ||||||||||||||||||| ||||||||||  |||||||||    
T  25995080 ttggacggagggaataaattgattgacattttacaaattcaggaactattttgatatttcgttaaattgggggataaatttggcc 25995164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 131 - 254
Target Start/End: Original strand, 32653598 - 32653721
Alignment:
Q  131 tttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaatt 230  Q
    ||||||||||||||| ||||||| | ||||   ||||||||||| ||||||||||||||||||| |||||  ||||||||||| || |||  |  |||||    
T  32653598 tttggacggagggacaaaattgacgaacattttacaaattcaggcactattttgatatttcgttaaattgaaggacgaatttgaccgatcagtgcaaatt 32653697  T
Q  231 cagggacgaaattgatggtttact 254  Q
    |||| || || |||||| ||||||    
T  32653698 caggaaccaagttgatgatttact 32653721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 255
Target Start/End: Original strand, 39922993 - 39923098
Alignment:
Q  150 ttgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatggt 249  Q
    ||||| |||||  |||||||||||||| ||  |||||||||||   ||||| |||||||| |||||| | |  |||||||||||||||||||||||||||    
T  39922993 ttgattgacatttaacaaattcagggattaaattgatatttcgcataattgagggacgaagttggccgacctgtaaaaattcagggacgaaattgatggt 39923092  T
Q  250 ttactc 255  Q
    | ||||    
T  39923093 tcactc 39923098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 132 - 213
Target Start/End: Original strand, 13450272 - 13450353
Alignment:
Q  132 ttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttg 213  Q
    ||||||||||| || |||||||| ||||    |||||||||||||||||||| |||||| ||| ||||||||||| ||||||    
T  13450272 ttggacggaggtactaaattgattgacactttacaaattcagggactattttcatattttgttaaattgggggacaaatttg 13450353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 150 - 255
Target Start/End: Original strand, 44558512 - 44558617
Alignment:
Q  150 ttgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatggt 249  Q
    ||||||||| ||  ||||||||||||||||  |||||||||||   ||||| |||| |||||||||| | || | |||||||| ||||||| ||||||||    
T  44558512 ttgatggacgtctgacaaattcagggactaagttgatatttcgcataattgagggatgaatttggccgacccgtgaaaattcaaggacgaagttgatggt 44558611  T
Q  250 ttactc 255  Q
    | ||||    
T  44558612 tcactc 44558617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 117
Target Start/End: Original strand, 11255841 - 11255905
Alignment:
Q  53 tttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacacagca 117  Q
    |||||||||||||||||| |||||| |||||| |||| ||  |||||||||||| ||||||||||    
T  11255841 tttccatcaatttagtccttgtacacgtggctgccttgttgacacgtgtacaagacaacacagca 11255905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 166 - 257
Target Start/End: Complemental strand, 47941900 - 47941809
Alignment:
Q  166 aaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatggtttactcga 257  Q
    ||||||||||| ||  |||||||||||   ||||| | |||||||||| || | || ||||||||||||||| |||||||||||| ||||||    
T  47941900 aaattcagggattaaattgatatttcgcataattgagagacgaatttgaccgacccgtaaaaattcagggactaaattgatggttcactcga 47941809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 247
Target Start/End: Complemental strand, 42879380 - 42879283
Alignment:
Q  150 ttgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatg 247  Q
    ||||| |||||  |||||||||| ||| ||  |||||||||||   ||||| |||||||| |||||| | || |||||||||||||||||| ||||||    
T  42879380 ttgattgacatttaacaaattcatggattaaattgatatttcgcataattgagggacgaagttggccgacccgtaaaaattcagggacgaagttgatg 42879283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 247
Target Start/End: Complemental strand, 44992913 - 44992816
Alignment:
Q  150 ttgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatg 247  Q
    ||||| |||||  |||||| ||||||| ||  |||||||||||   ||||| |||||||| |||||| | || |||||||||||||||||| ||||||    
T  44992913 ttgattgacatttaacaaactcagggattaaattgatatttcgcataattgagggacgaagttggccgacccgtaaaaattcagggacgaagttgatg 44992816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 114
Target Start/End: Complemental strand, 51012148 - 51012087
Alignment:
Q  53 tttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacaca 114  Q
    |||||||||||||||||| |||||| |||||| |||| ||  |||||||||||| |||||||    
T  51012148 tttccatcaatttagtccttgtacacgtggctgccttgttgacacgtgtacaagacaacaca 51012087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 255
Target Start/End: Complemental strand, 35996186 - 35996063
Alignment:
Q  132 ttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattc 231  Q
    ||||||||||||||    ||||||||| ||  | ||||||||||| ||  ||||||||| |  |||||| |||||||||||| || | || ||||||| |    
T  35996186 ttggacggagggacctttttgatggacgtctgataaattcagggattaaattgatattttgcacaattgagggacgaatttgaccgacccataaaaatcc 35996087  T
Q  232 agggacgaaattgatggtttactc 255  Q
    || ||| |||||||||||| ||||    
T  35996086 agagactaaattgatggttcactc 35996063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 55 - 117
Target Start/End: Complemental strand, 4519597 - 4519535
Alignment:
Q  55 tccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacacagca 117  Q
    |||||||| ||||||| || ||| ||| ||| |||||| ||||||||||||| ||||||||||    
T  4519597 tccatcaaattagtccttgaacacgtgactttctttttgccacgtgtacaagacaacacagca 4519535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 142 - 256
Target Start/End: Original strand, 35997745 - 35997859
Alignment:
Q  142 ggacgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaa 241  Q
    |||| |||||||| ||||   |||||||||||||| ||  |||||||||| |  ||||| || |||||||||||| | || | ||||||||||||| ||     
T  35997745 ggactaaattgattgacaattaacaaattcagggattaaattgatatttcttataattgaggaacgaatttggccgacccgtgaaaattcagggacaaag 35997844  T
Q  242 ttgatggtttactcg 256  Q
    |||||| || |||||    
T  35997845 ttgatgattcactcg 35997859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 255
Target Start/End: Original strand, 2350558 - 2350631
Alignment:
Q  182 ttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatggtttactc 255  Q
    |||||||||||   ||||| ||||| ||||||||| | || | ||||||||||||| |||||||||||| ||||    
T  2350558 ttgatatttcgcataattgagggacaaatttggccgacccatgaaaattcagggactaaattgatggttcactc 2350631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 247
Target Start/End: Original strand, 2828397 - 2828494
Alignment:
Q  150 ttgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatg 247  Q
    ||||| |||||  |||||||||| ||| ||  |||||||||||   ||||| ||||| || |||||| | || |||||||||||||||||| ||||||    
T  2828397 ttgattgacatttaacaaattcaaggattaaattgatatttcgcataattgagggacaaagttggccgacccataaaaattcagggacgaagttgatg 2828494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 255
Target Start/End: Original strand, 10372725 - 10372830
Alignment:
Q  150 ttgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatggt 249  Q
    ||||||||| ||  |||||||||||||  |  |||||||||||   ||||| ||||| ||||||||| |  | | |||||||||||||||| ||||||||    
T  10372725 ttgatggacgtctgacaaattcagggatgaaattgatatttcgcataattgagggactaatttggccgacgcgtgaaaattcagggacgaatttgatggt 10372824  T
Q  250 ttactc 255  Q
    | ||||    
T  10372825 tcactc 10372830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 247
Target Start/End: Original strand, 39085138 - 39085235
Alignment:
Q  150 ttgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatg 247  Q
    ||||| |||||  |||||||||| ||| ||  |||||||||||   ||||| |||||||| ||| || | || |||||||||||||||||| ||||||    
T  39085138 ttgattgacatttaacaaattcatggattaaattgatatttcgcataattgagggacgaagttgaccgacccgtaaaaattcagggacgaagttgatg 39085235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 247
Target Start/End: Complemental strand, 44793047 - 44792942
Alignment:
Q  142 ggacgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaa 241  Q
    |||| |||||||| ||||   |||||||||||||| ||  |||||||||||   ||||| ||||||||||||||| | || | | ||||||||||| ||     
T  44793047 ggactaaattgattgacaattaacaaattcagggattaaattgatatttcgcataattgagggacgaatttggccgacccgtgataattcagggactaag 44792948  T
Q  242 ttgatg 247  Q
    ||||||    
T  44792947 ttgatg 44792942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 2827622 - 2827566
Alignment:
Q  58 atcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacaca 114  Q
    ||||| |||||||||| ||| ||||||||||| || ||||| ||||||| |||||||    
T  2827622 atcaaattagtccctgaacacgtggcttccttcttgccacgcgtacaagacaacaca 2827566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 35996281 - 35996225
Alignment:
Q  58 atcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacaca 114  Q
    ||||| ||||||| || ||| ||||||||||| || ||||||||||||| |||||||    
T  35996281 atcaaattagtccttgaacacgtggcttccttcttgccacgtgtacaagacaacaca 35996225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 51041837 - 51041893
Alignment:
Q  58 atcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacaca 114  Q
    ||||| ||||||| || ||||||||||||||| || ||||||||| ||| |||||||    
T  51041837 atcaaattagtccttgaacatgtggcttccttcttgccacgtgtataagacaacaca 51041893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 169; Significance: 3e-90; HSPs: 42)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 44 - 256
Target Start/End: Original strand, 4322485 - 4322697
Alignment:
Q  44 ttttcgcattttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacacagcacactaacggaccttttggacggaggg 143  Q
    |||||| ||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4322485 ttttcgtattttccatcaatttagtccctgtacacgtgactttctttttcccacgtgtacaagccaacacagcacactaacggaccttttggacggaggg 4322584  T
Q  144 acgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaatt 243  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||| || ||||||||||||||||    
T  4322585 acgaaattgatggatgtcaaacaaattcagggactattttgatatttcgttaaattgggggacgagtttggccgatccctgaatattcagggacgaaatt 4322684  T
Q  244 gatggtttactcg 256  Q
    |||||||||||||    
T  4322685 gatggtttactcg 4322697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 44 - 255
Target Start/End: Complemental strand, 45463881 - 45463670
Alignment:
Q  44 ttttcgcattttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacacagcacactaacggaccttttggacggaggg 143  Q
    |||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  45463881 ttttcgtattttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacaacacactaacggaccttttggacggaggg 45463782  T
Q  144 acgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaatt 243  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||| | |||| |||||||||||||||||||    
T  45463781 acgaaattgatggacgtcaaacaaattcagggactattttgatatttcgttaaatttagggacgaatttggccgacccctgaaaattcagggacgaaatt 45463682  T
Q  244 gatggtttactc 255  Q
    ||||||| ||||    
T  45463681 gatggttcactc 45463670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 44 - 256
Target Start/End: Original strand, 48303562 - 48303774
Alignment:
Q  44 ttttcgcattttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacacagcacactaacggaccttttggacggaggg 143  Q
    |||||| |||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  48303562 ttttcgtattttctatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagcacactaacagaccttttggacggaggg 48303661  T
Q  144 acgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaatt 243  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||| ||| |||| | ||||| ||||| || ||| || |||||||||||||||||||    
T  48303662 acgaaattgatggacgtcaaataaattcagggactattttgatattttgttaaattagaggacggatttgaccgatcgctgaaaattcagggacgaaatt 48303761  T
Q  244 gatggtttactcg 256  Q
    |||||||||||||    
T  48303762 gatggtttactcg 48303774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 44 - 255
Target Start/End: Complemental strand, 34691206 - 34690995
Alignment:
Q  44 ttttcgcattttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacacagcacactaacggaccttttggacggaggg 143  Q
    |||||| |||||||||||||||| |||||||||| ||||||||||| || ||||||||||||||||||||| |||||||||  |||||||||| ||||||    
T  34691206 ttttcgtattttccatcaatttaatccctgtacacgtggcttccttgttgccacgtgtacaagccaacacaacacactaacataccttttggatggaggg 34691107  T
Q  144 acgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaatt 243  Q
    ||||||||||||||| ||| |||||||||| |||||||||||||||| ||| |||| |||||||||||||||| ||||||||||||||||||| ||||||    
T  34691106 acgaaattgatggacgtcagacaaattcagagactattttgatattttgttaaatttggggacgaatttggccgatccctaaaaattcagggatgaaatt 34691007  T
Q  244 gatggtttactc 255  Q
    ||||||||||||    
T  34691006 gatggtttactc 34690995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 173 - 250
Target Start/End: Original strand, 30109708 - 30109785
Alignment:
Q  173 gggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatggtt 250  Q
    |||||||||||||||||||||| |||| |||||||||||||||| | |||| ||||||||||||||||||||||||||    
T  30109708 gggactattttgatatttcgttaaatttggggacgaatttggccgacccctgaaaattcagggacgaaattgatggtt 30109785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 132 - 240
Target Start/End: Original strand, 34785080 - 34785188
Alignment:
Q  132 ttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattc 231  Q
    |||||||||||||| |||||||| |||||   ||||||||||||||||||||||||||||||| | |||| |||||| ||||||| || | || ||||||    
T  34785080 ttggacggagggactaaattgattgacattttacaaattcagggactattttgatatttcgttaatttggaggacgactttggccgattcgtacaaattc 34785179  T
Q  232 agggacgaa 240  Q
    |||||||||    
T  34785180 agggacgaa 34785188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 131 - 213
Target Start/End: Original strand, 34692715 - 34692797
Alignment:
Q  131 tttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttg 213  Q
    ||||||||||||||| ||||||||||||||   |||||||||||||||||||| |||||||||| ||||| || || ||||||    
T  34692715 tttggacggagggacaaaattgatggacattttacaaattcagggactattttcatatttcgttaaattgaggtacaaatttg 34692797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 257 - 313
Target Start/End: Original strand, 21026961 - 21027017
Alignment:
Q  257 atctatgtttctctctctttccaaaactgctgttttttatttattcatttattatga 313  Q
    |||||||||  |||||||||||||||||||||||||||||||||| |||||||||||    
T  21026961 atctatgttattctctctttccaaaactgctgttttttatttatttatttattatga 21027017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 48302275 - 48302191
Alignment:
Q  131 tttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggc 215  Q
    |||||||||| |||| ||||||| | ||||   |||||||||| |||||||||||||||||||| ||||| ||||||||||||||    
T  48302275 tttggacggaaggacaaaattgacgaacattttacaaattcagagactattttgatatttcgttaaattgagggacgaatttggc 48302191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 256
Target Start/End: Complemental strand, 30108670 - 30108564
Alignment:
Q  150 ttgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatggt 249  Q
    ||||| |||||  |||||||||||||| ||  |||||||||||   ||||| |||||||| |||||| | || |||||||||||||||||| |||||| |    
T  30108670 ttgattgacatttaacaaattcagggattaaattgatatttcgcataattgagggacgaagttggccgacccgtaaaaattcagggacgaagttgatgat 30108571  T
Q  250 ttactcg 256  Q
    | |||||    
T  30108570 tcactcg 30108564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 150 - 247
Target Start/End: Complemental strand, 46810810 - 46810713
Alignment:
Q  150 ttgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatg 247  Q
    ||||| |||||  |||||||||||||| ||  |||||||||||   ||||| ||||| ||||||||| |||| | |||||||||||||||| ||||||    
T  46810810 ttgattgacatttaacaaattcagggattaaattgatatttcgcataattgagggactaatttggccgatccgtgaaaattcagggacgaagttgatg 46810713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 257 - 309
Target Start/End: Complemental strand, 28172293 - 28172241
Alignment:
Q  257 atctatgtttctctctctttccaaaactgctgttttttatttattcatttatt 309  Q
    |||||||||||||||||||| ||||| ||||||||| |||||||| |||||||    
T  28172293 atctatgtttctctctcttttcaaaattgctgttttgtatttatttatttatt 28172241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 121 - 192
Target Start/End: Original strand, 29996504 - 29996575
Alignment:
Q  121 taacggaccttttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttcg 192  Q
    |||||||||||||||| ||||||||||| ||||||||| ||    ||||||||||| || ||||||||||||    
T  29996504 taacggaccttttggatggagggacgaatttgatggacgtctgtaaaattcagggattaatttgatatttcg 29996575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 55 - 114
Target Start/End: Complemental strand, 38613684 - 38613625
Alignment:
Q  55 tccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacaca 114  Q
    |||||||| ||||||| || ||| ||||||| |||||||||||||||||||| |||||||    
T  38613684 tccatcaagttagtccttgaacacgtggctttctttttcccacgtgtacaagacaacaca 38613625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 132 - 255
Target Start/End: Original strand, 46996703 - 46996826
Alignment:
Q  132 ttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattc 231  Q
    ||||||||||||||    ||||||||| ||  |||||||||| |||||  |||||||||||   ||||| |||||||| |||||| |  | | |||||||    
T  46996703 ttggacggagggacctttttgatggacgtctgacaaattcagtgactaagttgatatttcgcataattgagggacgaagttggccgacgcgtgaaaattc 46996802  T
Q  232 agggacgaaattgatggtttactc 255  Q
    ||||||||| ||||||||| ||||    
T  46996803 agggacgaatttgatggttcactc 46996826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 164 - 255
Target Start/End: Original strand, 47341719 - 47341810
Alignment:
Q  164 acaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatggtttactc 255  Q
    ||||||||||||||||  |||||||||||   ||||| |||| |||||||||| | || | |||||||| ||||||| ||||||||| ||||    
T  47341719 acaaattcagggactaagttgatatttcgcataattgagggatgaatttggccgacccgtgaaaattcaaggacgaatttgatggttcactc 47341810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 11682904 - 11682846
Alignment:
Q  132 ttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatattt 190  Q
    |||||||||||||| |||||||||||| || ||| |||||| |||||| ||||||||||    
T  11682904 ttggacggagggactaaattgatggacgtctaacgaattcaaggactaatttgatattt 11682846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 258
Target Start/End: Original strand, 38613514 - 38613608
Alignment:
Q  164 acaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatggtttactcgat 258  Q
    ||||||||||||||||  |||||||||||   ||||| |||| |||||||||| | || | |||||| | ||||||| ||||||||| |||||||    
T  38613514 acaaattcagggactaagttgatatttcgcataattgagggatgaatttggccgacccgtgaaaattgaaggacgaatttgatggttcactcgat 38613608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 48704302 - 48704248
Alignment:
Q  163 aacaaattcagggactattttgatatttcgtt-caattgggggacgaatttggcc 216  Q
    ||||||||| ||||||||||||||||||||||  || ||||||||||||||||||    
T  48704302 aacaaattcggggactattttgatatttcgttaaaactgggggacgaatttggcc 48704248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 23955323 - 23955368
Alignment:
Q  202 gggacgaatttggccaatccctaaaaattcagggacgaaattgatg 247  Q
    |||||||||||||||||||| ||||||||||| |||||| ||||||    
T  23955323 gggacgaatttggccaatccataaaaattcagagacgaagttgatg 23955368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 247
Target Start/End: Original strand, 36762666 - 36762763
Alignment:
Q  150 ttgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatg 247  Q
    ||||| |||||  |||||||||||||  ||  ||||||||||    ||||| ||||| ||||||||| |||| |||||||||||||||||| ||||||    
T  36762666 ttgattgacatttaacaaattcaggggttaaattgatatttcacataattgagggactaatttggccgatccgtaaaaattcagggacgaagttgatg 36762763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 257 - 294
Target Start/End: Complemental strand, 40346108 - 40346071
Alignment:
Q  257 atctatgtttctctctctttccaaaactgctgtttttt 294  Q
    |||||||||| |||||||||||||||||||||||||||    
T  40346108 atctatgtttttctctctttccaaaactgctgtttttt 40346071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 257
Target Start/End: Original strand, 8423316 - 8423407
Alignment:
Q  166 aaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatggtttactcga 257  Q
    ||||||||||| ||  |||||||||||   ||||| ||||| ||||||||  | || | ||||||||||||| |||||||||||| ||||||    
T  8423316 aaattcagggattaaattgatatttcgcataattgagggacaaatttggctgacccgtgaaaattcagggactaaattgatggttcactcga 8423407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 192
Target Start/End: Complemental strand, 20478176 - 20478105
Alignment:
Q  121 taacggaccttttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttcg 192  Q
    |||||||| ||||||||||||||||  | ||||||||| ||    |||||||||||||| ||||||||||||    
T  20478176 taacggacattttggacggagggactgatttgatggacgtctgcaaaattcagggactaatttgatatttcg 20478105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 114
Target Start/End: Complemental strand, 23954026 - 23953967
Alignment:
Q  55 tccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacaca 114  Q
    |||||||| |||||||  | ||| |||||||||||||| ||||||||||||| |||||||    
T  23954026 tccatcaaattagtcctggaacacgtggcttcctttttgccacgtgtacaagacaacaca 23953967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 247
Target Start/End: Original strand, 33038798 - 33038913
Alignment:
Q  132 ttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattc 231  Q
    ||||||||||||||    ||||||||| ||  | ||||||||||||||  |||||||||||   ||||| |||| ||||||| || | || |||||||||    
T  33038798 ttggacggagggacctttttgatggacgtctgaaaaattcagggactaagttgatatttcgcataattgagggatgaatttgaccgacccataaaaattc 33038897  T
Q  232 agggacgaaattgatg 247  Q
    | ||||||| ||||||    
T  33038898 aaggacgaatttgatg 33038913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 117
Target Start/End: Original strand, 47341588 - 47341647
Alignment:
Q  58 atcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacacagca 117  Q
    ||||| ||||||| || ||| ||||||||||| || ||||||||||||| ||||||||||    
T  47341588 atcaaattagtccttgaacacgtggcttccttcttgccacgtgtacaagacaacacagca 47341647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 192
Target Start/End: Complemental strand, 56466 - 56393
Alignment:
Q  119 actaacggaccttttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttcg 192  Q
    |||||| ||| |||||||||||||||   ||||||||||| ||    |||||||||||||| ||||||||||||    
T  56466 actaacagacattttggacggagggagtgaattgatggacgtctgtaaaattcagggactaatttgatatttcg 56393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 114
Target Start/End: Complemental strand, 1546510 - 1546449
Alignment:
Q  53 tttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacaca 114  Q
    |||||||||||||||||| |||||| ||| ||||||||||  ||||| || ||| |||||||    
T  1546510 tttccatcaatttagtccttgtacacgtgacttcctttttgacacgtatataagacaacaca 1546449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 247
Target Start/End: Complemental strand, 4321143 - 4321046
Alignment:
Q  150 ttgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatg 247  Q
    ||||| |||||  |||||||||||||| ||  |||||||||||   ||||  |||||||| |||||| | || | |||||||||||||||| ||||||    
T  4321143 ttgattgacatttaacaaattcagggattaaattgatatttcgcataattaagggacgaagttggccgacccgtgaaaattcagggacgaagttgatg 4321046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 247
Target Start/End: Complemental strand, 8421529 - 8421424
Alignment:
Q  142 ggacgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaa 241  Q
    |||| |||||||| ||||   |||||||||||||| ||  |||||||||||   ||||| ||||||||||||||| | || | | ||||||||||| ||     
T  8421529 ggactaaattgattgacaattaacaaattcagggattaaattgatatttcgcataattgagggacgaatttggccgacccgtgataattcagggactaag 8421430  T
Q  242 ttgatg 247  Q
    ||||||    
T  8421429 ttgatg 8421424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 247
Target Start/End: Complemental strand, 35342538 - 35342433
Alignment:
Q  142 ggacgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaa 241  Q
    |||| |||||||| ||||   |||||||||||||| ||  |||||||||||   ||||| ||||| ||||||||| | || ||| ||||||||||| ||     
T  35342538 ggactaaattgattgacaattaacaaattcagggattaaattgatatttcgcataattgagggacaaatttggccgacccgtaataattcagggactaag 35342439  T
Q  242 ttgatg 247  Q
    ||||||    
T  35342438 ttgatg 35342433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 255
Target Start/End: Original strand, 35344325 - 35344414
Alignment:
Q  166 aaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatggtttactc 255  Q
    ||||||||||| ||  |||||||||||   ||||| ||||||||||||||  | || | ||||||| ||||| |||||||||||| ||||    
T  35344325 aaattcagggattaaattgatatttcgcataattgagggacgaatttggctgacccgtgaaaattcggggactaaattgatggttcactc 35344414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 247
Target Start/End: Original strand, 45465170 - 45465267
Alignment:
Q  150 ttgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatg 247  Q
    ||||| |||||  |||||||||||||| ||  |||||||||||   ||||| |||||||| ||| || | || |||||||||| ||||||| ||||||    
T  45465170 ttgattgacatttaacaaattcagggattaaattgatatttcgcataattgagggacgaagttgaccgacccgtaaaaattcaaggacgaagttgatg 45465267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 114
Target Start/End: Original strand, 46439431 - 46439492
Alignment:
Q  53 tttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacaca 114  Q
    |||||||||||||||||| |||||| |||||| || | ||  |||||||||||| |||||||    
T  46439431 tttccatcaatttagtccatgtacacgtggctgccctgttgacacgtgtacaagacaacaca 46439492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 247
Target Start/End: Complemental strand, 46994765 - 46994668
Alignment:
Q  150 ttgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatg 247  Q
    ||||| |||||  |||||||||||||| ||  |||||||||||   |||||  ||||||| |||||| | || | |||||||||||||||| ||||||    
T  46994765 ttgattgacatttaacaaattcagggattaaattgatatttcgcataattgaaggacgaagttggccgacccgtgaaaattcagggacgaagttgatg 46994668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 118 - 158
Target Start/End: Complemental strand, 1546424 - 1546384
Alignment:
Q  118 cactaacggaccttttggacggagggacgaaattgatggac 158  Q
    |||||||||||||||||||||||||||| |  |||||||||    
T  1546424 cactaacggaccttttggacggagggaccattttgatggac 1546384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 2492548 - 2492496
Alignment:
Q  54 ttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaag 106  Q
    ||||||||| ||||||| || ||| ||| |||||||||| |||||||||||||    
T  2492548 ttccatcaaattagtccttgaacacgtgacttcctttttgccacgtgtacaag 2492496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 119 - 247
Target Start/End: Complemental strand, 27955506 - 27955378
Alignment:
Q  119 actaacggaccttttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaa 218  Q
    ||||||||| |  ||||||||||||||    ||||||||| ||  ||||||||||  | ||  ||||||||||||  ||||| |||| |||||| ||  |    
T  27955506 actaacggagcacttggacggagggacctctttgatggacgtctgacaaattcagaaattaagttgatatttcgtaaaattgagggatgaatttagctga 27955407  T
Q  219 tccctaaaaattcagggacgaaattgatg 247  Q
    ||| |||||||||| ||||||| ||||||    
T  27955406 tccgtaaaaattcaaggacgaatttgatg 27955378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 53 - 117
Target Start/End: Original strand, 30940326 - 30940390
Alignment:
Q  53 tttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacacagca 117  Q
    |||||||||||||||||| |||||| |||||| |||| ||  || ||||||| | ||||||||||    
T  30940326 tttccatcaatttagtccttgtacacgtggctgccttgttgacatgtgtacaggacaacacagca 30940390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 35693275 - 35693331
Alignment:
Q  57 catcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacac 113  Q
    |||||||||||||| |||||| |||||| |||| ||  |||||||||||| ||||||    
T  35693275 catcaatttagtccttgtacacgtggctgccttgttgacacgtgtacaagacaacac 35693331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 40784564 - 40784508
Alignment:
Q  58 atcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacaca 114  Q
    ||||| ||||||| || ||||||||||||||| || ||||||||| ||| |||||||    
T  40784564 atcaaattagtccttgaacatgtggcttccttcttgccacgtgtataagacaacaca 40784508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 169; Significance: 3e-90; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 44 - 256
Target Start/End: Complemental strand, 28246874 - 28246662
Alignment:
Q  44 ttttcgcattttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacacagcacactaacggaccttttggacggaggg 143  Q
    |||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28246874 ttttcgtattttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagcacactaacggaccttttggacagaggg 28246775  T
Q  144 acgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaatt 243  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||| | ||||||||||||||||||||||||    
T  28246774 acgaaattgatggacgtcaaacaaattcaggaactattttgatatttcgttaaatttggggacgaatttggccgacccctaaaaattcagggacgaaatt 28246675  T
Q  244 gatggtttactcg 256  Q
    ||||||| |||||    
T  28246674 gatggttcactcg 28246662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 44 - 250
Target Start/End: Original strand, 11022926 - 11023131
Alignment:
Q  44 ttttcgcattttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacacagcacactaacggaccttttggacggaggg 143  Q
    |||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11022926 ttttcgtattttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagcacactaacggaccttttggacggaggg 11023025  T
Q  144 acgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaatt 243  Q
    ||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||| |||||||||||||||||||    
T  11023026 acggaattgatggacgtcaaacaaattcagggactattttgatatttcgttaaattgggggacgaatttggccga-ccctgaaaattcagggacgaaatt 11023124  T
Q  244 gatggtt 250  Q
    |||||||    
T  11023125 gatggtt 11023131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 292 - 495
Target Start/End: Complemental strand, 31638834 - 31638635
Alignment:
Q  292 tttatttattcatttattatgagctctcagttgtggatgaaaaacattagagatggctaaataataaaggcaggagaagatccatttcttcaaatcagat 391  Q
    ||||||||||||||| || |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  31638834 tttatttattcatttgttgtgagctctcagttgtggatgaaaaacatgagagatggttaaataataaaggcaggagaagatccatttcttcaaatcagat 31638735  T
Q  392 agaatcatgatgaatgataaagctttcaaactcatgacctctaattaattaagtaagaagaatttttttaccatctcttcaaaatgttatcgggtacaag 491  Q
    |||||||||||| |||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||| || || |||| |||||||||||    
T  31638734 agaatcatgatggatgataaagctttcaaactcatgacctctaa----ttaagtaagaagaatttttttaccatctcatcgaagtgttgtcgggtacaag 31638639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 51 - 260
Target Start/End: Complemental strand, 38148700 - 38148490
Alignment:
Q  51 attttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacacagcacactaacggaccttttggacggagggacgaaat 150  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||| ||||||||| ||||||||||||||| |||||||||    
T  38148700 attttccatcaatttagtccctgtacacgtggcttcctttttccgacgtgtacaagccaatacaacacactaacagaccttttggacggatggacgaaat 38148601  T
Q  151 tgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttgg-ccaatccctaaaaattcagggacgaaattgatggt 249  Q
    |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| || ||| || |||||||||||||||||||||||||    
T  38148600 tgatggacgtcaaacaaattcagggactattttgatatttcgttaaattgggggacaaatttggcccgatctctgaaaattcagggacgaaattgatggt 38148501  T
Q  250 ttactcgatct 260  Q
    |||||| ||||    
T  38148500 ttactcaatct 38148490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 53 - 247
Target Start/End: Original strand, 11315258 - 11315451
Alignment:
Q  53 tttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacacagcacactaacggaccttttggacggagggacgaaattg 152  Q
    |||||||||| || |||| |||||||||||||||||| ||  |||||||||||| ||||||| ||   || | || | ||||||||||||||| |  |||    
T  11315258 tttccatcaaattggtccttgtacatgtggcttccttgttgacacgtgtacaagacaacacaacatg-tagcagaacatttggacggagggaccattttg 11315356  T
Q  153 atggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatg 247  Q
    |||||| ||  ||||||||||| ||||||||||||||||||| |||| ||| |||||||||||| || | |||||||| | ||||||| ||||||    
T  11315357 atggacgtctgacaaattcaggaactattttgatatttcgttaaattagggaacgaatttggccgattcataaaaatttaaggacgaagttgatg 11315451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 257 - 379
Target Start/End: Complemental strand, 19271366 - 19271242
Alignment:
Q  257 atctatgtttctctctctttccaaaactgctgttttttatttattcatttattatgagctctcag--ttgtggatgaaaaacattagagatggctaaata 354  Q
    ||||| |||| ||||||||||||||||||||||| ||||||| || |||| ||||||||||||||  |  ||||||||| |||| || | ||||| || |    
T  19271366 atctacgtttttctctctttccaaaactgctgttatttatttctttatttgttatgagctctcagcctgttggatgaaacacatgaggggtggctgaaca 19271267  T
Q  355 ataaaggcaggagaagatccatttc 379  Q
    ||| ||||| |||| ||||||||||    
T  19271266 atataggcaagagaggatccatttc 19271242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 166 - 250
Target Start/End: Complemental strand, 39645 - 39561
Alignment:
Q  166 aaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatggtt 250  Q
    ||||||||||| ||  |||||||||||   ||||| ||||||||||||||| | || ||||||||||||||| ||||||||||||    
T  39645 aaattcagggattaaattgatatttcgcataattgagggacgaatttggccgacccgtaaaaattcagggactaaattgatggtt 39561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 135 - 219
Target Start/End: Original strand, 38149986 - 38150069
Alignment:
Q  135 gacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaat 219  Q
    ||||||||||| ||||||| ||||||   |||||||||   ||||||||||||||||||| ||||| ||||||||||||||||||    
T  38149986 gacggagggacaaaattgacggacattttacaaattcata-actattttgatatttcgttaaattgagggacgaatttggccaat 38150069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 245
Target Start/End: Original strand, 39664755 - 39664882
Alignment:
Q  118 cactaacggaccttttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggcca 217  Q
    |||||||||| ||||||||||||||||| |  ||||||||| ||    ||||||||||||||  | ||||||||||  |||| ||||||||||||||||     
T  39664755 cactaacggagcttttggacggagggaccattttgatggacgtctgtaaaattcagggactaaatagatatttcgtaaaattcggggacgaatttggccg 39664854  T
Q  218 atccctaaaaattcagggacgaaattga 245  Q
    ||   | |||||||| ||||||| ||||    
T  39664855 attttttaaaattcaaggacgaatttga 39664882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 150 - 247
Target Start/End: Original strand, 28248161 - 28248258
Alignment:
Q  150 ttgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatg 247  Q
    ||||| |||||  |||||||||||||| ||  |||||||||||   ||||| |||||||| |||||| | || |||||||||||||||||| ||||||    
T  28248161 ttgattgacatttaacaaattcagggattaaattgatatttcgcataattgagggacgaagttggccgacccgtaaaaattcagggacgaagttgatg 28248258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 17946231 - 17946159
Alignment:
Q  118 cactaacggaccttttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatattt 190  Q
    |||||||||||||||||||||||||||| |  ||||||||||| | | |||||||||||| |  |||||||||    
T  17946231 cactaacggaccttttggacggagggaccattttgatggacatgagagaaattcagggacaaaattgatattt 17946159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 192
Target Start/End: Complemental strand, 7744180 - 7744106
Alignment:
Q  118 cactaacggaccttttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttcg 192  Q
    ||||||||||||||||||| |||||||| |  ||||||||||| | | |||||||||||| |  |||||||||||    
T  7744180 cactaacggaccttttggatggagggaccattttgatggacatgagagaaattcagggacgaaattgatatttcg 7744106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 247
Target Start/End: Original strand, 41144 - 41225
Alignment:
Q  166 aaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatg 247  Q
    ||||||||||| ||  |||||||||||   ||||| ||||||||||||||| | || | |||||||||||||||| ||||||    
T  41144 aaattcagggattaaattgatatttcgcataattgagggacgaatttggccgacccgtgaaaattcagggacgaagttgatg 41225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 247
Target Start/End: Complemental strand, 11021638 - 11021541
Alignment:
Q  150 ttgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatg 247  Q
    ||||| |||||  |||||||||||||| ||  |||||||||||   ||||| |||||||| |||||| | || | |||||||||||||||| ||||||    
T  11021638 ttgattgacatttaacaaattcagggattaaattgatatttcgcataattgagggacgaagttggccgacccgtgaaaattcagggacgaagttgatg 11021541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 255
Target Start/End: Complemental strand, 37417378 - 37417273
Alignment:
Q  150 ttgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatggt 249  Q
    ||||||||| ||  ||||||||||||||||  |||||||||||   ||||| |||| |||||||||| | || | |||||||| |||||||  |||||||    
T  37417378 ttgatggacgtctgacaaattcagggactaagttgatatttcgcataattgagggatgaatttggccgacccatgaaaattcaaggacgaatatgatggt 37417279  T
Q  250 ttactc 255  Q
    | ||||    
T  37417278 tcactc 37417273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 150 - 250
Target Start/End: Complemental strand, 25619765 - 25619665
Alignment:
Q  150 ttgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatggt 249  Q
    |||||||||||   ||||||||||||||||  ||||||||| |   ||||| |||| ||||||| || | || |||||||||| ||||||| ||||||||    
T  25619765 ttgatggacatatgacaaattcagggactaagttgatattttgcataattgagggatgaatttgaccgacccataaaaattcaaggacgaatttgatggt 25619666  T
Q  250 t 250  Q
    |    
T  25619665 t 25619665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 121 - 191
Target Start/End: Complemental strand, 37020642 - 37020572
Alignment:
Q  121 taacggaccttttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttc 191  Q
    |||||||| ||||||||||||||||  | ||||||||| ||    |||||||||||||| |||||||||||    
T  37020642 taacggacattttggacggagggactgatttgatggacgtctgcaaaattcagggactaatttgatatttc 37020572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 6797726 - 6797669
Alignment:
Q  57 catcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacaca 114  Q
    |||||||||||||| |||||| |||||| |||| ||  |||||||||||| |||||||    
T  6797726 catcaatttagtccttgtacacgtggctgccttgttgacacgtgtacaagacaacaca 6797669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 114
Target Start/End: Original strand, 10716804 - 10716865
Alignment:
Q  53 tttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacaca 114  Q
    |||||||||| || |||| |||||| ||||||||||| ||  |||||||||||| |||||||    
T  10716804 tttccatcaaattggtccttgtacacgtggcttccttgttgacacgtgtacaagacaacaca 10716865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 114
Target Start/End: Original strand, 14389005 - 14389066
Alignment:
Q  53 tttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacaca 114  Q
    |||||||||| ||||||| |||||| |||||| |||| ||  |||||||||||| |||||||    
T  14389005 tttccatcaagttagtccttgtacacgtggctgccttattgacacgtgtacaagacaacaca 14389066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 255
Target Start/End: Complemental strand, 15372588 - 15372499
Alignment:
Q  166 aaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatggtttactc 255  Q
    ||||||||||| ||  ||||||||| |   ||||| ||| ||||||||||| | || | ||||||||||||| |||||||||||| ||||    
T  15372588 aaattcagggattaaattgatattttgcataattgaggggcgaatttggccgacccgtgaaaattcagggactaaattgatggttcactc 15372499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 114
Target Start/End: Complemental strand, 17946317 - 17946256
Alignment:
Q  53 tttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacaca 114  Q
    |||||||||||||||||| |||||| ||| ||||||||||  || ||||||| | |||||||    
T  17946317 tttccatcaatttagtccttgtacacgtgacttcctttttgacatgtgtacatgacaacaca 17946256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 37417485 - 37417432
Alignment:
Q  64 ttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacacagca 117  Q
    ||||||| || ||| ||||||||||| || ||||||||||||| ||||||||||    
T  37417485 ttagtccttgaacacgtggcttccttcttgccacgtgtacaagacaacacagca 37417432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 255
Target Start/End: Complemental strand, 41706628 - 41706539
Alignment:
Q  166 aaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatggtttactc 255  Q
    ||||||||||| ||  |||||||||||   ||||| |||||||||||| || | || | |||||||||| || |||||||||||| ||||    
T  41706628 aaattcagggattaaattgatatttcgcataattgagggacgaatttgaccgacccgtgaaaattcaggaactaaattgatggttcactc 41706539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 53 - 117
Target Start/End: Complemental strand, 40560446 - 40560382
Alignment:
Q  53 tttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacacagca 117  Q
    |||||||||||||||||| |||||| |||||| |||| ||  |||| ||||| | ||||||||||    
T  40560446 tttccatcaatttagtccttgtacacgtggctgccttgttgacacgcgtacatgacaacacagca 40560382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 53 - 117
Target Start/End: Original strand, 42519126 - 42519190
Alignment:
Q  53 tttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacacagca 117  Q
    |||||||||||||||||| |||||| ||| || |||| ||  |||||||||| | ||||||||||    
T  42519126 tttccatcaatttagtccttgtacacgtgactgccttgttgacacgtgtacaggacaacacagca 42519190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 169; Significance: 3e-90; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 44 - 256
Target Start/End: Complemental strand, 5783575 - 5783363
Alignment:
Q  44 ttttcgcattttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacacagcacactaacggaccttttggacggaggg 143  Q
    |||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  5783575 ttttcgtattttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacaacacactaacggaccttttggacggaggg 5783476  T
Q  144 acgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaatt 243  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| || |||||||||| | ||||||||||||||||||||||||    
T  5783475 acgaaattgatggacgtcaaacaaattcagggactattttgatatttcgttaaattgggagatgaatttggccgacccctaaaaattcagggacgaaatt 5783376  T
Q  244 gatggtttactcg 256  Q
    ||||||| |||||    
T  5783375 gatggttcactcg 5783363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 245
Target Start/End: Original strand, 34778125 - 34778252
Alignment:
Q  118 cactaacggaccttttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggcca 217  Q
    |||||||||| ||||||||||||||||| |  ||||||||||||    |||||||||||||| ||||||||||||   ||||  |||||| ||||||||     
T  34778125 cactaacggagcttttggacggagggaccattttgatggacatctgtaaaattcagggactaatttgatatttcgcaaaattcagggacgtatttggccg 34778224  T
Q  218 atccctaaaaattcagggacgaaattga 245  Q
    ||   | |||||||| ||||||| ||||    
T  34778225 attttttaaaattcaaggacgaatttga 34778252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 255
Target Start/End: Complemental strand, 42134605 - 42134482
Alignment:
Q  132 ttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattc 231  Q
    ||||||||||||||    ||||||||| ||  ||||||||||||||||  |||||||||||   ||||| |||| || ||||||| | || |||||||||    
T  42134605 ttggacggagggacctttttgatggacgtctgacaaattcagggactaagttgatatttcgcataattgagggatgattttggccgacccgtaaaaattc 42134506  T
Q  232 agggacgaaattgatggtttactc 255  Q
    | ||||||| ||||||||| ||||    
T  42134505 aaggacgaatttgatggttcactc 42134482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 121 - 192
Target Start/End: Original strand, 46583546 - 46583617
Alignment:
Q  121 taacggaccttttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttcg 192  Q
    ||||||||||||||||||||||||| || ||||||||| ||    |||||||||||||| ||||||||||||    
T  46583546 taacggaccttttggacggagggacaaatttgatggacgtctgtaaaattcagggactaatttgatatttcg 46583617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 191
Target Start/End: Original strand, 33602632 - 33602704
Alignment:
Q  119 actaacggaccttttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttc 191  Q
    ||||||||||||||||||||||||||| || |||| |||| ||    |||||||||||||| |||||||||||    
T  33602632 actaacggaccttttggacggagggactaatttgacggacgtctgtaaaattcagggactaatttgatatttc 33602704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 240
Target Start/End: Original strand, 34041828 - 34041904
Alignment:
Q  164 acaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaa 240  Q
    |||||||||||||||||||||||  |||||| ||||| ||||||||||||| | || | |  |||||||||||||||    
T  34041828 acaaattcagggactattttgattattcgttaaattgagggacgaatttggtccattcgtgcaaattcagggacgaa 34041904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 257 - 313
Target Start/End: Original strand, 38586157 - 38586213
Alignment:
Q  257 atctatgtttctctctctttccaaaactgctgttttttatttattcatttattatga 313  Q
    |||||||||| ||||||||| |||||||| ||||||||||||||| |||| ||||||    
T  38586157 atctatgtttttctctcttttcaaaactgttgttttttatttatttatttgttatga 38586213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 58 - 117
Target Start/End: Complemental strand, 42134700 - 42134641
Alignment:
Q  58 atcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacacagca 117  Q
    ||||| ||||||| || ||||||||||||||| || ||||||||||||| ||||||||||    
T  42134700 atcaaattagtccttgaacatgtggcttccttcttgccacgtgtacaagacaacacagca 42134641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 256
Target Start/End: Original strand, 18183962 - 18184068
Alignment:
Q  150 ttgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatggt 249  Q
    ||||||||| ||  ||||||||||||||||  |||||||||||   ||||| |||| || ||||||| | || ||||||||||  |||||| ||||||||    
T  18183962 ttgatggacgtctgacaaattcagggactaagttgatatttcgcataattgagggatgattttggccgaaccgtaaaaattcaaagacgaatttgatggt 18184061  T
Q  250 ttactcg 256  Q
    | |||||    
T  18184062 tcactcg 18184068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 114
Target Start/End: Complemental strand, 2869802 - 2869741
Alignment:
Q  53 tttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacaca 114  Q
    |||||||||||||||||| ||||||||||||| |||| ||  |||||||||| | |||||||    
T  2869802 tttccatcaatttagtccttgtacatgtggctgccttgttgacacgtgtacaggacaacaca 2869741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 114
Target Start/End: Original strand, 26225455 - 26225516
Alignment:
Q  53 tttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacaca 114  Q
    |||||||||||||||||| ||||||||||||| | || ||  |||||||||||| |||||||    
T  26225455 tttccatcaatttagtccttgtacatgtggctgctttgttgacacgtgtacaagacaacaca 26225516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 114
Target Start/End: Original strand, 34778040 - 34778101
Alignment:
Q  53 tttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacaca 114  Q
    |||||||||||||||||| |||||| |||||| |||| ||  |||||||||||| |||||||    
T  34778040 tttccatcaatttagtccttgtacacgtggctgccttgttgacacgtgtacaagacaacaca 34778101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 121 - 245
Target Start/End: Original strand, 4855956 - 4856080
Alignment:
Q  121 taacggaccttttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatc 220  Q
    ||||||| ||||||||||||||||| |  ||||||||| ||    |||||||||||||| ||||||||||||   ||||  |||||| |||||||| ||     
T  4855956 taacggagcttttggacggagggaccattttgatggacgtctgtaaaattcagggactaatttgatatttcgcaaaattcagggacgtatttggccgatt 4856055  T
Q  221 cctaaaaattcagggacgaaattga 245  Q
      | |||||||| ||||||| ||||    
T  4856056 ttttaaaattcaaggacgaatttga 4856080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 53 - 117
Target Start/End: Complemental strand, 15104664 - 15104600
Alignment:
Q  53 tttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacacagca 117  Q
    |||||||||| ||||||| |||||| |||||| |||| ||  |||||||||||| ||||||||||    
T  15104664 tttccatcaaattagtccttgtacacgtggctgccttattgacacgtgtacaagacaacacagca 15104600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 18183846 - 18183906
Alignment:
Q  54 ttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacaca 114  Q
    ||||||||| ||||||| || ||| |||||||| ||||| ||||||||||||| |||||||    
T  18183846 ttccatcaaattagtccttgaacacgtggcttcttttttgccacgtgtacaagacaacaca 18183906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 53 - 117
Target Start/End: Complemental strand, 27087505 - 27087441
Alignment:
Q  53 tttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacacagca 117  Q
    |||||||||||| ||||| |||||| |||||| |||| ||  |||||||||||| ||||||||||    
T  27087505 tttccatcaattcagtccttgtacacgtggctgccttgttgacacgtgtacaagacaacacagca 27087441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 192
Target Start/End: Original strand, 9121658 - 9121729
Alignment:
Q  121 taacggaccttttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttcg 192  Q
    |||||||| ||||||||||||||||  | ||||||||| ||    |||||||||||||| ||||||||||||    
T  9121658 taacggacattttggacggagggactgatttgatggacgtctgcaaaattcagggactaatttgatatttcg 9121729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 117
Target Start/End: Original strand, 45380890 - 45380949
Alignment:
Q  58 atcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacacagca 117  Q
    ||||| ||||||| || ||| ||||||||||| || ||||||||||||| ||||||||||    
T  45380890 atcaaattagtccttgaacacgtggcttccttcttgccacgtgtacaagacaacacagca 45380949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 150 - 256
Target Start/End: Original strand, 5784853 - 5784959
Alignment:
Q  150 ttgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatggt 249  Q
    ||||| |||||  |||||||||||||| ||  |||||||||||   ||||| |||||||| ||| || | || | |||||||||||||||| |||||| |    
T  5784853 ttgattgacatttaacaaattcagggattaaattgatatttcgcataattgagggacgaagttgaccgacccgtgaaaattcagggacgaagttgatgat 5784952  T
Q  250 ttactcg 256  Q
    | |||||    
T  5784953 tcactcg 5784959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 260 - 333
Target Start/End: Complemental strand, 26765450 - 26765376
Alignment:
Q  260 tatgtttctctctctttccaaaactgctgttttttatttattcatttattatgagctctcagttg-tggatgaaa 333  Q
    ||||||| ||||| ||| ||||||||| ||| ||||||| || |||| |||||| |||||||||| |||||||||    
T  26765450 tatgtttttctctattttcaaaactgcagttatttatttctttatttgttatgatctctcagttgttggatgaaa 26765376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 182 - 256
Target Start/End: Complemental strand, 27940681 - 27940607
Alignment:
Q  182 ttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatggtttactcg 256  Q
    |||||||||||   ||||| |||||||||||| |||| |  | ||||||||||||| |||||||||||| |||||    
T  27940681 ttgatatttcgcataattgagggacgaatttgaccaacctgtgaaaattcagggactaaattgatggttcactcg 27940607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 150 - 256
Target Start/End: Complemental strand, 33679364 - 33679258
Alignment:
Q  150 ttgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatggt 249  Q
    ||||| |||||  |||||||||| ||| ||  |||||||||||   ||||| ||||||||||||||  | || |||||||||| |||| ||||||||| |    
T  33679364 ttgattgacatttaacaaattcaaggattaaattgatatttcgcataattgagggacgaatttggctgacccgtaaaaattcatggacaaaattgatgat 33679265  T
Q  250 ttactcg 256  Q
    | |||||    
T  33679264 tcactcg 33679258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 114
Target Start/End: Original strand, 4855868 - 4855929
Alignment:
Q  53 tttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacaca 114  Q
    |||||||||||||||||| |||||| ||| || |||| ||  |||||||||||| |||||||    
T  4855868 tttccatcaatttagtccttgtacacgtgactgccttgttgacacgtgtacaagacaacaca 4855929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 247
Target Start/End: Complemental strand, 11152650 - 11152553
Alignment:
Q  150 ttgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatg 247  Q
    ||||| |||||  ||||||||| |||| ||  |||||||||||   ||||| |||||||| |||||| | || | |||||||||||||||| ||||||    
T  11152650 ttgattgacatttaacaaattctgggattaaattgatatttcgcataattgagggacgaaattggccgacccgtgaaaattcagggacgaagttgatg 11152553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 247
Target Start/End: Original strand, 27952478 - 27952583
Alignment:
Q  142 ggacgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaa 241  Q
    |||| |||||||| ||||   |||||||||||||| ||  |||||||||||   ||||| ||||||||||||||| | || | | ||||||||||| ||     
T  27952478 ggactaaattgattgacaattaacaaattcagggattaaattgatatttcgcataattgagggacgaatttggccgacccgtgataattcagggactaag 27952577  T
Q  242 ttgatg 247  Q
    ||||||    
T  27952578 ttgatg 27952583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 247
Target Start/End: Original strand, 31803686 - 31803783
Alignment:
Q  150 ttgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatg 247  Q
    ||||| |||||  |||||||||||||| ||  |||||||||||   |||||  ||||||| |||||| | || | |||||||||||||||| ||||||    
T  31803686 ttgattgacatttaacaaattcagggattaaattgatatttcgcataattgaaggacgaagttggccgacccgtgaaaattcagggacgaagttgatg 31803783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 255
Target Start/End: Original strand, 33685299 - 33685372
Alignment:
Q  182 ttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatggtttactc 255  Q
    |||||||||||   ||||| |||| ||||||| || | || |||||||||||||||||| ||||||||| ||||    
T  33685299 ttgatatttcgcataattgagggatgaatttgaccgacccgtaaaaattcagggacgaatttgatggttcactc 33685372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 53 - 113
Target Start/End: Original strand, 3013371 - 3013431
Alignment:
Q  53 tttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacac 113  Q
    |||||||||||||||||| |||||| |||||| |||| ||  |||||||||| | ||||||    
T  3013371 tttccatcaatttagtccttgtacacgtggctgccttgttgacacgtgtacatgacaacac 3013431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 46638713 - 46638769
Alignment:
Q  58 atcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacaca 114  Q
    ||||| || ||||||| ||| |||||||||||||| ||||| ||||||| |||||||    
T  46638713 atcaaattcgtccctgaacacgtggcttcctttttgccacgcgtacaagacaacaca 46638769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 51122042 - 51121970
Alignment:
Q  118 cactaacggaccttttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatattt 190  Q
    ||||||| |||||||||||||||||||| |  ||||||||| | | | |||||||||||| |  |||||||||    
T  51122042 cactaacagaccttttggacggagggaccattttgatggacgtgagagaaattcagggacgaaattgatattt 51121970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 165; Significance: 7e-88; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 44 - 256
Target Start/End: Original strand, 40020548 - 40020760
Alignment:
Q  44 ttttcgcattttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacacagcacactaacggaccttttggacggaggg 143  Q
    |||||| ||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40020548 ttttcgtattttccatcaatttagtccctgtacacgtggttttctttttcccacgtgtacaagccaacacagcacactaacggaccttttggacggaggg 40020647  T
Q  144 acgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaatt 243  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||  | ||||||| ||||||||||||||||    
T  40020648 acgaaattgatggacgtcaaacaaattcagggactattttgatatttcgttaaatttggggacgaatttggcagacccctaaagattcagggacgaaatt 40020747  T
Q  244 gatggtttactcg 256  Q
    ||||||| |||||    
T  40020748 gatggttcactcg 40020760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 44 - 249
Target Start/End: Original strand, 28433629 - 28433834
Alignment:
Q  44 ttttcgcattttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacacagcacactaacggaccttttggacggaggg 143  Q
    |||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||    
T  28433629 ttttcgtattttccatcaatttagtccatgtacacgtggcttcctttttcccacgtgtacaagccaacacaacaaactaacgaaccttttggacggaggg 28433728  T
Q  144 acgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaatt 243  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||| | |||||||||||||||||||    
T  28433729 acgaaatcgatggacgtcaaacaaattcagggactattttgatatttcgttaaattgagggacgaatttggccgatccttgaaaattcagggacgaaatt 28433828  T
Q  244 gatggt 249  Q
    ||||||    
T  28433829 gatggt 28433834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 131 - 255
Target Start/End: Original strand, 23811532 - 23811656
Alignment:
Q  131 tttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaatt 230  Q
    |||||||||||||||||||||||  |||||   ||||||||| ||||||||||||||||| ||  ||||||||||||||||||||| |||| |   ||||    
T  23811532 tttggacggagggacgaaattgactgacattttacaaattcaaggactattttgatattttgtaaaattgggggacgaatttggccgatccgtgcgaatt 23811631  T
Q  231 cagggacgaaattgatggtttactc 255  Q
    |||||||||| |||||  |||||||    
T  23811632 cagggacgaagttgataatttactc 23811656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 255
Target Start/End: Complemental strand, 32822466 - 32822361
Alignment:
Q  150 ttgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatggt 249  Q
    ||||||||||||  ||||||||||||||||  |||||||||     ||||| |||| |||||||||| |||| |||||||||| ||||||| ||||||||    
T  32822466 ttgatggacatctgacaaattcagggactaagttgatattttaaataattgagggatgaatttggccgatccataaaaattcaaggacgaagttgatggt 32822367  T
Q  250 ttactc 255  Q
    | ||||    
T  32822366 tcactc 32822361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 245
Target Start/End: Complemental strand, 27691286 - 27691164
Alignment:
Q  123 acggaccttttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccc 222  Q
    |||||||||||||||||||||||| | ||||||||| ||    |||||||||||||| ||||||||||||   ||||  |||||||| |||||| ||       
T  27691286 acggaccttttggacggagggacggatttgatggacgtctgtaaaattcagggactaatttgatatttcgcaaaattcagggacgaaattggccgatttt 27691187  T
Q  223 taaaaattcagggacgaaattga 245  Q
    | |||||||| ||||||| ||||    
T  27691186 tcaaaattcaaggacgaatttga 27691164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 247
Target Start/End: Complemental strand, 9184507 - 9184391
Alignment:
Q  131 tttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaatt 230  Q
    ||||||||||||||| |  | ||| ||| ||  |||||||||||||||| ||||||||||||   | ||||| ||||||||||||| || | |  |||||    
T  9184507 tttggacggagggaccatttcgatcgacgtctgacaaattcagggactaatttgatatttcgcgtagttgggcgacgaatttggccgattcgtgcaaatt 9184408  T
Q  231 cagggacgaaattgatg 247  Q
    || ||||||||||||||    
T  9184407 caaggacgaaattgatg 9184391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 117
Target Start/End: Original strand, 13108258 - 13108322
Alignment:
Q  53 tttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacacagca 117  Q
    |||||||||||||||||| |||||| |||||| |||| ||  |||||||||||| ||||||||||    
T  13108258 tttccatcaatttagtccttgtacacgtggctgccttgttgacacgtgtacaagacaacacagca 13108322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 117
Target Start/End: Complemental strand, 38547450 - 38547386
Alignment:
Q  53 tttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacacagca 117  Q
    |||||||||||||||||| |||||| |||||| |||| ||  |||||||||||| ||||||||||    
T  38547450 tttccatcaatttagtccttgtacacgtggctgccttgttgacacgtgtacaagacaacacagca 38547386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 166 - 257
Target Start/End: Original strand, 31201178 - 31201269
Alignment:
Q  166 aaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatggtttactcga 257  Q
    ||||||||||| ||  |||||||||||   |||||  |||||||||||||| | || | ||||||||||||| |||||||||||| ||||||    
T  31201178 aaattcagggattaaattgatatttcgcataattgatggacgaatttggccgacccgtgaaaattcagggactaaattgatggttcactcga 31201269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 132 - 255
Target Start/End: Original strand, 42897775 - 42897898
Alignment:
Q  132 ttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattc 231  Q
    ||||||||||||||    ||||||||| ||  ||||||||| ||||||  ||||||||||    ||||| ||||||||||||||| | || |||||||||    
T  42897775 ttggacggagggacctttttgatggacgtctgacaaattcaaggactaagttgatatttcacataattgagggacgaatttggccgacccgtaaaaattc 42897874  T
Q  232 agggacgaaattgatggtttactc 255  Q
    | ||||| | ||||||||| ||||    
T  42897875 aaggacggatttgatggttcactc 42897898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 114
Target Start/End: Complemental strand, 5036672 - 5036611
Alignment:
Q  53 tttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacaca 114  Q
    |||||||||||||||||| |||||| |||||| |||| ||  |||||||||||| |||||||    
T  5036672 tttccatcaatttagtccttgtacacgtggctgccttgttgacacgtgtacaagacaacaca 5036611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 53 - 117
Target Start/End: Original strand, 8609709 - 8609773
Alignment:
Q  53 tttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacacagca 117  Q
    |||||||||||||||||| |||||| |||||| |||| |   |||||||||||| ||||||||||    
T  8609709 tttccatcaatttagtccttgtacacgtggctgccttgtcgacacgtgtacaagacaacacagca 8609773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 132 - 232
Target Start/End: Complemental strand, 11031552 - 11031452
Alignment:
Q  132 ttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattc 231  Q
    |||||||||||||| |||||||| |||||   ||||| ||||| |||| ||||||||||||   |||||| | |||| ||||||| |||| || ||||||    
T  11031552 ttggacggagggactaaattgattgacatatgacaaactcaggaactaatttgatatttcgcataattggagaacgattttggcccatccttacaaattc 11031453  T
Q  232 a 232  Q
    |    
T  11031452 a 11031452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 28432345 - 28432293
Alignment:
Q  131 tttggacggagggacgaaattgatggacatcaaacaaattcagggactatttt 183  Q
    ||||||||||||||| ||||||| ||||||   ||||||||||||||||||||    
T  28432345 tttggacggagggacaaaattgacggacattttacaaattcagggactatttt 28432293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 117
Target Start/End: Original strand, 42897680 - 42897739
Alignment:
Q  58 atcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacacagca 117  Q
    ||||| ||||||| || ||| ||||||||||| || ||||||||||||| ||||||||||    
T  42897680 atcaaattagtccttgaacacgtggcttccttcttgccacgtgtacaagacaacacagca 42897739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 118 - 216
Target Start/End: Original strand, 8609794 - 8609892
Alignment:
Q  118 cactaacggaccttttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggcc 216  Q
    |||||||||| ||||||||||||||||| |  ||||||||| ||    ||||||||||||||  | |||||||||   ||||  |||||||||||||||    
T  8609794 cactaacggagcttttggacggagggaccattttgatggacgtctgtaaaattcagggactaaatagatatttcgcaaaattcagggacgaatttggcc 8609892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 58 - 112
Target Start/End: Complemental strand, 8654717 - 8654663
Alignment:
Q  58 atcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaaca 112  Q
    ||||| ||||||| || ||||||||||||||| || ||||||||||||| |||||    
T  8654717 atcaaattagtccttgaacatgtggcttccttcttgccacgtgtacaagacaaca 8654663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 118 - 192
Target Start/End: Original strand, 13108343 - 13108417
Alignment:
Q  118 cactaacggaccttttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttcg 192  Q
    |||||||| | ||||||||||||||||| |  ||||||||| ||    |||||||||||||| ||||||||||||    
T  13108343 cactaacgaagcttttggacggagggaccattttgatggacgtctgtaaaattcagggactaatttgatatttcg 13108417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 118 - 192
Target Start/End: Complemental strand, 38547365 - 38547291
Alignment:
Q  118 cactaacggaccttttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttcg 192  Q
    |||||||||| |||||||| |||||||| |  ||||||||| ||    |||||||||||||| ||||||||||||    
T  38547365 cactaacggagcttttggatggagggaccattttgatggacgtctgtaaaattcagggactaatttgatatttcg 38547291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 42941997 - 42941947
Alignment:
Q  53 tttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtac 103  Q
    |||||||||||||||||| ||||||||||||| |||| ||  |||||||||    
T  42941997 tttccatcaatttagtccttgtacatgtggctgccttgttgacacgtgtac 42941947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 247
Target Start/End: Original strand, 31823462 - 31823559
Alignment:
Q  150 ttgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatg 247  Q
    ||||| |||||  |||||||| ||||| ||  |||||||||||   ||||| |||||||| |||||| | || | |||||||||||||||| ||||||    
T  31823462 ttgattgacatttaacaaatttagggattaaattgatatttcgcataattgagggacgaagttggccgacccgtgaaaattcagggacgaagttgatg 31823559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 247
Target Start/End: Complemental strand, 40019261 - 40019164
Alignment:
Q  150 ttgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatg 247  Q
    ||||| |||||  |||||||||||||| ||  |||||||||||   ||||| |||||||| |||||| | || ||||||||||  |||||| ||||||    
T  40019261 ttgattgacatttaacaaattcagggattaaattgatatttcgcataattgagggacgaagttggccgacccgtaaaaattcaaagacgaagttgatg 40019164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 157; Significance: 4e-83; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 44 - 255
Target Start/End: Complemental strand, 41944785 - 41944576
Alignment:
Q  44 ttttcgcattttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacacagcacactaacggaccttttggacggaggg 143  Q
    |||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||    
T  41944785 ttttcgtattttccatcaatttagtccctgtacacgcggcttcctttttcccacgtgtacaagccaacacagcacactaacggaccttttgaacggaagg 41944686  T
Q  144 acgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaatt 243  Q
    ||||||||  | ||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||    
T  41944685 acgaaatt--tcgacgtcaaaaaaattcagggactattttgatatttcgttaaattgggggacgaatttggccgatccctgaaaattcagggacgaaatt 41944588  T
Q  244 gatggtttactc 255  Q
    ||||||||||||    
T  41944587 gatggtttactc 41944576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 132 - 216
Target Start/End: Complemental strand, 30501240 - 30501156
Alignment:
Q  132 ttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggcc 216  Q
    |||||||||||||| |||||||| |||||   ||||||||||  ||||||||||||||||||| |||||||||||||||||||||    
T  30501240 ttggacggagggactaaattgattgacattttacaaattcagaaactattttgatatttcgttaaattgggggacgaatttggcc 30501156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 135 - 247
Target Start/End: Original strand, 40963369 - 40963481
Alignment:
Q  135 gacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagg 234  Q
    ||||||||||| |||||||| |||||   |||||||||||||||||||| |||||||||| |||||||| ||||||||| || || | |  |||||||||    
T  40963369 gacggagggactaaattgattgacattttacaaattcagggactattttcatatttcgttaaattggggaacgaatttgaccgattcatgcaaattcagg 40963468  T
Q  235 gacgaaattgatg 247  Q
    |||||| ||||||    
T  40963469 gacgaagttgatg 40963481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 131 - 255
Target Start/End: Original strand, 41946066 - 41946190
Alignment:
Q  131 tttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaatt 230  Q
    ||||||||||||||| ||||||| ||||||   ||||||||| ||||||||||||||||||||| ||||| ||||| |||||| || |||  |  |||||    
T  41946066 tttggacggagggacaaaattgacggacattttacaaattcatggactattttgatatttcgttaaattgagggacaaatttgaccgatcagtgcaaatt 41946165  T
Q  231 cagggacgaaattgatggtttactc 255  Q
    |||| || ||||||||| |||||||    
T  41946166 caggaaccaaattgatgatttactc 41946190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 121 - 192
Target Start/End: Complemental strand, 44794341 - 44794270
Alignment:
Q  121 taacggaccttttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttcg 192  Q
    |||||||||||||||||||||||||||| ||||||||| ||    |||||||||||||| ||||||||||||    
T  44794341 taacggaccttttggacggagggacgaatttgatggacttctgcaaaattcagggactaatttgatatttcg 44794270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 121 - 192
Target Start/End: Original strand, 3152228 - 3152299
Alignment:
Q  121 taacggaccttttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttcg 192  Q
    |||||||||||||||||||||||||| | ||||||||| ||    |||||||||||||| ||||||||||||    
T  3152228 taacggaccttttggacggagggacggatttgatggacgtctgtaaaattcagggactaatttgatatttcg 3152299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 163 - 258
Target Start/End: Original strand, 48635372 - 48635467
Alignment:
Q  163 aacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatggtttactcgat 258  Q
    |||||||||||||| ||  |||||||||||   ||||  |||||||||||| || |||| | ||||||||||||||||||||||| || |||||||    
T  48635372 aacaaattcagggattaaattgatatttcgcataattaagggacgaatttgaccgatccgtgaaaattcagggacgaaattgatgattcactcgat 48635467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 260
Target Start/End: Complemental strand, 23774257 - 23774147
Alignment:
Q  150 ttgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatggt 249  Q
    ||||||||| ||  ||||||||||||||||  |||||||||||   ||||| ||||||||||||||| |  | | |||||||| ||||||| ||||||||    
T  23774257 ttgatggacgtctgacaaattcagggactaaattgatatttcgcataattgagggacgaatttggccgactcgtgaaaattcaaggacgaatttgatggt 23774158  T
Q  250 ttactcgatct 260  Q
    | |||| ||||    
T  23774157 tcactcaatct 23774147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 31887355 - 31887417
Alignment:
Q  55 tccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacacagca 117  Q
    |||||||| ||||||| || |||| ||||||||||||| ||||||||||||| ||||||||||    
T  31887355 tccatcaaattagtccttgaacatatggcttcctttttgccacgtgtacaagacaacacagca 31887417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 117
Target Start/End: Original strand, 2226074 - 2226138
Alignment:
Q  53 tttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacacagca 117  Q
    |||||||||||||||||| |||||| |||||| |||| ||  |||||||||||| ||||||||||    
T  2226074 tttccatcaatttagtccttgtacacgtggctaccttgttgacacgtgtacaagacaacacagca 2226138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 255
Target Start/End: Original strand, 40508899 - 40509035
Alignment:
Q  119 actaacggaccttttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaa 218  Q
    ||||||||| |  ||||||||||||||    ||||||||| ||  ||||||||| ||| ||  |||||||||||   ||||| ||||||||||||||| |    
T  40508899 actaacggaacacttggacggagggacatttttgatggacgtctgacaaattcaaggattaagttgatatttcgcataattgagggacgaatttggccga 40508998  T
Q  219 tccctaaaaattcagggacgaaattgatggtttactc 255  Q
     || | |||||||| ||||||| ||||||||| ||||    
T  40508999 cccgtgaaaattcaaggacgaatttgatggttcactc 40509035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 121 - 192
Target Start/End: Complemental strand, 2660346 - 2660275
Alignment:
Q  121 taacggaccttttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttcg 192  Q
    |||| ||||||||||||||||||||||| ||||||||| ||    ||||||| |||||| ||||||||||||    
T  2660346 taacagaccttttggacggagggacgaatttgatggacgtctgtaaaattcaaggactaatttgatatttcg 2660275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 132 - 255
Target Start/End: Complemental strand, 48634000 - 48633877
Alignment:
Q  132 ttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattc 231  Q
    ||||||||||||||    ||||||||| ||  ||||||||||||||||  |||||||||||   |||||  ||||||||||| || | || | |||||||    
T  48634000 ttggacggagggacctttttgatggacgtctgacaaattcagggactaagttgatatttcgcataattgatggacgaatttgaccgacccgtgaaaattc 48633901  T
Q  232 agggacgaaattgatggtttactc 255  Q
    | ||||||| ||||||||| ||||    
T  48633900 aaggacgaatttgatggttcactc 48633877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 114
Target Start/End: Original strand, 7884795 - 7884856
Alignment:
Q  53 tttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacaca 114  Q
    |||||||||||||||||| | ||||||||||| |||| ||  |||||||||||| |||||||    
T  7884795 tttccatcaatttagtccttatacatgtggctgccttgttgacacgtgtacaagacaacaca 7884856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 23888678 - 23888735
Alignment:
Q  58 atcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacacag 115  Q
    ||||| |||||||||| ||||||||||||||| || ||||| ||||||| ||||||||    
T  23888678 atcaaattagtccctgaacatgtggcttccttcttgccacgcgtacaagacaacacag 23888735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 247
Target Start/End: Complemental strand, 45897155 - 45897058
Alignment:
Q  150 ttgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatg 247  Q
    ||||| |||||  |||||||||||||| ||  |||||||||||   ||||| |||||||| |||||| | || |||||||||| ||||||| ||||||    
T  45897155 ttgattgacatttaacaaattcagggattaaattgatatttcgcataattgagggacgaagttggccgacccgtaaaaattcaaggacgaagttgatg 45897058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 257
Target Start/End: Original strand, 51454283 - 51454376
Alignment:
Q  164 acaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatggtttactcga 257  Q
    |||||||||  ||||| ||||||||||||   ||||| || | |||||||||| |||| | |||||||| ||||||| ||||||||| ||||||    
T  51454283 acaaattcaaagactaatttgatatttcgcataattgaggaatgaatttggccgatccgtgaaaattcaaggacgaatttgatggttcactcga 51454376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 114
Target Start/End: Original strand, 53190681 - 53190742
Alignment:
Q  53 tttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacaca 114  Q
    |||||||||||||||||| |||||| |||||| |||| ||  |||||||||||| |||||||    
T  53190681 tttccatcaatttagtccttgtacacgtggctgccttgttgacacgtgtacaagacaacaca 53190742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 53 - 117
Target Start/End: Original strand, 30599839 - 30599903
Alignment:
Q  53 tttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacacagca 117  Q
    |||||||||||||||||| |||||| |||||| |||| ||  || ||||||||| ||||||||||    
T  30599839 tttccatcaatttagtccttgtacacgtggctgccttattgacatgtgtacaagacaacacagca 30599903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 33113083 - 33113135
Alignment:
Q  54 ttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaag 106  Q
    ||||||||| ||||||| || ||| |||||||||||||| |||||||||||||    
T  33113083 ttccatcaaattagtccttgaacacgtggcttcctttttgccacgtgtacaag 33113135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 255
Target Start/End: Original strand, 31887453 - 31887576
Alignment:
Q  132 ttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattc 231  Q
    ||||||||||||||    ||||| ||||||  ||||||||||||||||  |||||||||||   |||||  ||  ||||||| || |||| | |||||||    
T  31887453 ttggacggagggacctttttgatagacatctgacaaattcagggactaagttgatatttcgcataattgatggttgaatttgaccgatccgtgaaaattc 31887552  T
Q  232 agggacgaaattgatggtttactc 255  Q
    | ||||||| ||||||||| ||||    
T  31887553 aaggacgaatttgatggttcactc 31887576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 245
Target Start/End: Original strand, 53190766 - 53190893
Alignment:
Q  118 cactaacggaccttttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggcca 217  Q
    |||||||||| ||||||||||||||||| |  ||||||||| ||    ||||||||||||||  | |||||||||   ||||  |||||||||||||||     
T  53190766 cactaacggagcttttggacggagggaccattttgatggacgtctgtaaaattcagggactaaatagatatttcgcaaaattcagggacgaatttggccg 53190865  T
Q  218 atccctaaaaattcagggacgaaattga 245  Q
    ||   | |||||||| ||||||| ||||    
T  53190866 attttttaaaattcaaggacgaatttga 53190893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 53 - 111
Target Start/End: Original strand, 35905634 - 35905692
Alignment:
Q  53 tttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaac 111  Q
    |||||||||||||||||| |||||| |||||| |||| ||  |||||||||||| ||||    
T  35905634 tttccatcaatttagtccttgtacacgtggctgccttgttgacacgtgtacaagacaac 35905692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 53 - 111
Target Start/End: Complemental strand, 54898659 - 54898601
Alignment:
Q  53 tttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaac 111  Q
    |||||||||||||||||| |||||| |||||| |||| ||  |||||||||||| ||||    
T  54898659 tttccatcaatttagtccttgtacacgtggctgccttgttgacacgtgtacaagacaac 54898601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 114
Target Start/End: Complemental strand, 17515533 - 17515472
Alignment:
Q  53 tttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacaca 114  Q
    |||||||||||||||||| |||||| |||||| |||| ||  || ||||||||| |||||||    
T  17515533 tttccatcaatttagtccttgtacacgtggctgccttattgacaagtgtacaagacaacaca 17515472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 114
Target Start/End: Original strand, 23293091 - 23293152
Alignment:
Q  53 tttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacaca 114  Q
    |||||||||||||||||| |||||| |||||| |||| ||  |||||||||| | |||||||    
T  23293091 tttccatcaatttagtccttgtacacgtggctgccttgttgacacgtgtacatgacaacaca 23293152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 247
Target Start/End: Complemental strand, 23887303 - 23887206
Alignment:
Q  150 ttgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatg 247  Q
    ||||| |||||  |||||||||||||| ||  |||||||||||   ||||| |||||||| || ||| | || |||||||||| ||||||| ||||||    
T  23887303 ttgattgacattgaacaaattcagggattaaattgatatttcgcataattgagggacgaagttagccgacccataaaaattcaaggacgaagttgatg 23887206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 247
Target Start/End: Complemental strand, 33111946 - 33111849
Alignment:
Q  150 ttgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatg 247  Q
    ||||| |||||  |||||||||||||| ||  |||||||||||   ||||| |||| ||||||| || | || | |||||||||||||||| ||||||    
T  33111946 ttgattgacatttaacaaattcagggattaaattgatatttcgcataattgagggatgaatttgaccgagccgtgaaaattcagggacgaagttgatg 33111849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 255
Target Start/End: Original strand, 33113199 - 33113304
Alignment:
Q  150 ttgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatggt 249  Q
    ||||||||| ||  ||||||| ||||||||  |||||||||||   ||||| |||| || ||||||| | || |||||||||| |||| || ||||||||    
T  33113199 ttgatggacgtctgacaaatttagggactaagttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaaggactaatttgatggt 33113298  T
Q  250 ttactc 255  Q
    | ||||    
T  33113299 tcactc 33113304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 114
Target Start/End: Complemental strand, 41977972 - 41977911
Alignment:
Q  53 tttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacaca 114  Q
    |||||||||||||||||| |||||| ||| || |||| ||  |||||||||||| |||||||    
T  41977972 tttccatcaatttagtccttgtacacgtgactgccttgttgacacgtgtacaagacaacaca 41977911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 48634099 - 48634051
Alignment:
Q  58 atcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaag 106  Q
    ||||| ||||||| || ||| |||||||||||||| |||||||||||||    
T  48634099 atcaaattagtccttgaacacgtggcttcctttttgccacgtgtacaag 48634051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 148; Significance: 1e-77; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 44 - 255
Target Start/End: Original strand, 42620676 - 42620887
Alignment:
Q  44 ttttcgcattttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacacagcacactaacggaccttttggacggaggg 143  Q
    |||||| |||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  42620676 ttttcgtattttccatcaatttagtccctatacacgtggctttctttttcccacgtgtacaagccaacacagcacactaacggaccttttgaacggaggg 42620775  T
Q  144 acgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaatt 243  Q
    | ||||||||||||| |||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||| | |||| ||||||| |||| ||||||    
T  42620776 atgaaattgatggacgtcaaacaaattcagagactattttgatatttggttaaattgggggacgaatttggccgacccctgaaaattccgggatgaaatt 42620875  T
Q  244 gatggtttactc 255  Q
    ||||||| ||||    
T  42620876 gatggttgactc 42620887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 131 - 247
Target Start/End: Original strand, 1344781 - 1344897
Alignment:
Q  131 tttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaatt 230  Q
    ||||||||||||||| |||||||| |||||   ||||||||| ||||||||||||||||||||  ||||||||||| |||||| || || | |  |||||    
T  1344781 tttggacggagggactaaattgattgacattttacaaattcaaggactattttgatatttcgtaaaattgggggacaaatttgaccgattcatgcaaatt 1344880  T
Q  231 cagggacgaaattgatg 247  Q
    |||||||||||||||||    
T  1344881 cagggacgaaattgatg 1344897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 150 - 255
Target Start/End: Complemental strand, 38596973 - 38596868
Alignment:
Q  150 ttgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatggt 249  Q
    ||||||||| || |||||||||||||||||  |||||||||||   ||||| ||||||||||||||| | || |||||||||| ||||||| ||||||||    
T  38596973 ttgatggacgtctaacaaattcagggactaagttgatatttcgcataattgagggacgaatttggccgacccataaaaattcaaggacgaatttgatggt 38596874  T
Q  250 ttactc 255  Q
    | ||||    
T  38596873 tcactc 38596868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 150 - 247
Target Start/End: Original strand, 32089911 - 32090008
Alignment:
Q  150 ttgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatg 247  Q
    ||||| |||||  |||||||||||||| ||  |||||||||||   ||||| |||||||| |||||| | || |||||||||||||||||| ||||||    
T  32089911 ttgattgacatttaacaaattcagggattaaattgatatttcgcataattgagggacgaagttggccgacccgtaaaaattcagggacgaagttgatg 32090008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 164 - 257
Target Start/End: Original strand, 43318093 - 43318186
Alignment:
Q  164 acaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatggtttactcga 257  Q
    ||||||||||||||||  |||||||||||   ||||| |||| || ||||||| | || |||||||||| ||||||| ||||||||| ||||||    
T  43318093 acaaattcagggactaagttgatatttcgcataattgagggatgattttggccgacccataaaaattcaaggacgaatttgatggttcactcga 43318186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 117
Target Start/End: Complemental strand, 17574540 - 17574476
Alignment:
Q  53 tttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacacagca 117  Q
    |||||||||||||||||| |||||| |||||| |||| ||  |||||||||||| ||||||||||    
T  17574540 tttccatcaatttagtccttgtacacgtggctgccttgttgacacgtgtacaagacaacacagca 17574476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 212
Target Start/End: Complemental strand, 1343345 - 1343264
Alignment:
Q  131 tttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaattt 212  Q
    ||||||||||||||| |||||||| || ||   |||||||||  |||||||||||||||| ||| ||||  |||||||||||    
T  1343345 tttggacggagggactaaattgattgatattttacaaattcaaagactattttgatattttgttaaattaagggacgaattt 1343264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 114
Target Start/End: Complemental strand, 7268065 - 7268004
Alignment:
Q  53 tttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacaca 114  Q
    |||||||||||||||||| |||||| |||||| |||| ||  |||||||||||| |||||||    
T  7268065 tttccatcaatttagtccttgtacacgtggctgccttgttgacacgtgtacaagacaacaca 7268004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 247
Target Start/End: Complemental strand, 18726670 - 18726573
Alignment:
Q  150 ttgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatg 247  Q
    ||||| |||||  |||||||| ||||||||  |||||||||||   ||||| |||||||| ||||  || || |||||||||||||||||| ||||||    
T  18726670 ttgattgacatttaacaaattaagggactaaattgatatttcgcataattgagggacgaagttggggaacccgtaaaaattcagggacgaagttgatg 18726573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 247
Target Start/End: Original strand, 33257746 - 33257843
Alignment:
Q  150 ttgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatg 247  Q
    ||||| |||||  |||||||||||||| ||  |||||||||||   ||||  |||||||| |||||| | || |||||||||||||||||| ||||||    
T  33257746 ttgattgacatttaacaaattcagggattaaattgatatttcgcataattaagggacgaagttggccgacccgtaaaaattcagggacgaagttgatg 33257843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 240
Target Start/End: Complemental strand, 38176724 - 38176647
Alignment:
Q  163 aacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaa 240  Q
    |||||||||||||| ||  |||||||||||   ||||  ||||||||||||||||| || | ||||||||||||||||    
T  38176724 aacaaattcagggattaaattgatatttcgcataattaagggacgaatttggccaacccatgaaaattcagggacgaa 38176647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 240
Target Start/End: Complemental strand, 38203948 - 38203871
Alignment:
Q  163 aacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaa 240  Q
    |||||||||||||| ||  |||||||||||   ||||  ||||||||||||||||| || | ||||||||||||||||    
T  38203948 aacaaattcagggattaaattgatatttcgcataattaagggacgaatttggccaacccatgaaaattcagggacgaa 38203871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 163 - 247
Target Start/End: Original strand, 40330514 - 40330598
Alignment:
Q  163 aacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatg 247  Q
    |||||||||||||| ||  |||||||||||   ||||| ||||||| ||||||| | || | |||||||||||||||| ||||||    
T  40330514 aacaaattcagggattaaattgatatttcgcataattgagggacgattttggccgacccgtgaaaattcagggacgaagttgatg 40330598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 245
Target Start/End: Complemental strand, 17574455 - 17574328
Alignment:
Q  118 cactaacggaccttttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggcca 217  Q
    |||||||||| ||||||||||||||||| |  ||||||||| ||    ||||||||||||||  | |||||||||   ||||  |||||||||||||||     
T  17574455 cactaacggagcttttggacggagggaccattttgatggacgtctgtaaaattcagggactaaatagatatttcgcaaaattcagggacgaatttggccg 17574356  T
Q  218 atccctaaaaattcagggacgaaattga 245  Q
    ||   | |||||||| ||||||| ||||    
T  17574355 attttttaaaattcaaggacgaatttga 17574328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 117
Target Start/End: Original strand, 18728508 - 18728567
Alignment:
Q  58 atcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacacagca 117  Q
    ||||| |||||||||  ||| ||||||||||| || ||||||||||||| ||||||||||    
T  18728508 atcaaattagtcccttaacacgtggcttccttcttgccacgtgtacaagacaacacagca 18728567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 192
Target Start/End: Original strand, 29621771 - 29621842
Alignment:
Q  121 taacggaccttttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttcg 192  Q
    |||||||| ||||||||||||||||  | ||||||||| ||    |||||||||||||| ||||||||||||    
T  29621771 taacggacattttggacggagggactgatttgatggacgtctgcaaaattcagggactaatttgatatttcg 29621842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 245
Target Start/End: Original strand, 30468267 - 30468394
Alignment:
Q  118 cactaacggaccttttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggcca 217  Q
    |||||||||| ||||||||||||||||| |  ||||||||| ||    ||||||| ||||||  | |||||||||   ||||| | |||||||||| |||    
T  30468267 cactaacggagcttttggacggagggaccattttgatggacgtctgtaaaattcaaggactaaatagatatttcgcaaaattgagagacgaatttgacca 30468366  T
Q  218 atccctaaaaattcagggacgaaattga 245  Q
    ||   | |||||||| ||||||||||||    
T  30468367 attttttaaaattcaaggacgaaattga 30468394  T

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Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 117
Target Start/End: Complemental strand, 32087732 - 32087673
Alignment:
Q  58 atcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacacagca 117  Q
    ||||| |||||||||| ||| ||||||||||| || ||||| ||||||| ||||||||||    
T  32087732 atcaaattagtccctgaacacgtggcttccttcttgccacgcgtacaagacaacacagca 32087673  T

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Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 255
Target Start/End: Complemental strand, 35395456 - 35395333
Alignment:
Q  132 ttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattc 231  Q
    ||||||||||||||    ||||||||| || |||||||||||| ||||  |||||||||||   ||||| |||||||| |||||| |    | |||||||    
T  35395456 ttggacggagggacctttttgatggacgtctaacaaattcaggaactaaattgatatttcgcataattgagggacgaagttggccgacgtgtgaaaattc 35395357  T
Q  232 agggacgaaattgatggtttactc 255  Q
    ||||| ||| ||||||||| ||||    
T  35395356 agggatgaatttgatggttcactc 35395333  T

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Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 113
Target Start/End: Complemental strand, 35395549 - 35395494
Alignment:
Q  58 atcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacac 113  Q
    ||||| |||||||||| ||||||||||||||| || ||||| ||||||| ||||||    
T  35395549 atcaaattagtccctgaacatgtggcttccttcttgccacgcgtacaagacaacac 35395494  T

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Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 192
Target Start/End: Original strand, 42473597 - 42473668
Alignment:
Q  121 taacggaccttttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttcg 192  Q
    |||||||| ||||||||||| ||||  | ||||||||| ||    |||||||||||||||||||||||||||    
T  42473597 taacggacattttggacggaaggactgatttgatggacgtctgtaaaattcagggactattttgatatttcg 42473668  T

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Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 135 - 213
Target Start/End: Original strand, 6116868 - 6116946
Alignment:
Q  135 gacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttg 213  Q
    |||| ||||||||||||||| |||||   ||||||||| ||||||||| | |||||||   ||||||||||| ||||||    
T  6116868 gacgaagggacgaaattgattgacatttgacaaattcaaggactatttggctatttcgacaaattgggggacaaatttg 6116946  T

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Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 2854321 - 2854382
Alignment:
Q  125 ggaccttttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgat 186  Q
    |||||||||||||||||||||||| ||| ||||| ||    |||||||||||||| ||||||    
T  2854321 ggaccttttggacggagggacgaatttgttggacgtctgtaaaattcagggactaatttgat 2854382  T

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Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 53 - 89
Target Start/End: Complemental strand, 27349369 - 27349333
Alignment:
Q  53 tttccatcaatttagtccctgtacatgtggcttcctt 89  Q
    |||||||||||||||||| |||||| |||||||||||    
T  27349369 tttccatcaatttagtccttgtacacgtggcttcctt 27349333  T

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Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 166 - 258
Target Start/End: Complemental strand, 32835965 - 32835873
Alignment:
Q  166 aaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatggtttactcgat 258  Q
    ||||||||||| ||  |||||||||||   ||||  |||||||||||| || | || | |||||||||||||||| |||||| || |||||||    
T  32835965 aaattcagggattaaattgatatttcgcataattaagggacgaatttgaccgacccgtgaaaattcagggacgaagttgatgattcactcgat 32835873  T

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Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 150 - 258
Target Start/End: Complemental strand, 42619394 - 42619286
Alignment:
Q  150 ttgatggacatcaaacaaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatggt 249  Q
    ||||| |||||  ||||||||| |||| ||  |||||||||||   ||||| |||||||| ||| || | || | |||||||||||||||| |||||| |    
T  42619394 ttgattgacatttaacaaattctgggattaaattgatatttcgcataattgagggacgaaattgaccgacccgtgaaaattcagggacgaagttgatgat 42619295  T
Q  250 ttactcgat 258  Q
    | |||||||    
T  42619294 tcactcgat 42619286  T

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Target: scaffold0058 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 121 - 192
Target Start/End: Complemental strand, 3428 - 3357
Alignment:
Q  121 taacggaccttttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttcg 192  Q
    |||||||||||||||||||||||||||| ||||||||| ||    |||||||||||||| ||||||||||||    
T  3428 taacggaccttttggacggagggacgaatttgatggacgtctgtaaaattcagggactaatttgatatttcg 3357  T

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Target: scaffold0058; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 121 - 192
Target Start/End: Complemental strand, 4600 - 4529
Alignment:
Q  121 taacggaccttttggacggagggacgaaattgatggacatcaaacaaattcagggactattttgatatttcg 192  Q
    |||||||||||||||||||||||||||| ||||||||| ||    |||||||||||||| ||||||||||||    
T  4600 taacggaccttttggacggagggacgaatttgatggacgtctgtaaaattcagggactaatttgatatttcg 4529  T

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Target: scaffold0477 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 166 - 257
Target Start/End: Original strand, 6669 - 6760
Alignment:
Q  166 aaattcagggactattttgatatttcgttcaattgggggacgaatttggccaatccctaaaaattcagggacgaaattgatggtttactcga 257  Q
    ||||||||||| ||  ||||||||||    ||||| ||||||||||||||| | || | ||||||||||||| |||||||||||| ||||||    
T  6669 aaattcagggattaaattgatatttcacataattgagggacgaatttggccgacccgtgaaaattcagggactaaattgatggttcactcga 6760  T

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Target: scaffold1454 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold1454
Description:

Target: scaffold1454; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 53 - 117
Target Start/End: Complemental strand, 1485 - 1421
Alignment:
Q  53 tttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacacagca 117  Q
    |||||||||||||||||| |||||| |||| | |||| ||  |||||||||||| ||||||||||    
T  1485 tttccatcaatttagtccttgtacacgtggttgccttgttgacacgtgtacaagacaacacagca 1421  T

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Target: scaffold0564 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 114
Target Start/End: Complemental strand, 8483 - 8422
Alignment:
Q  53 tttccatcaatttagtccctgtacatgtggcttcctttttcccacgtgtacaagccaacaca 114  Q
    |||||||||||||||| | |||||| |||||| |||| ||  |||||||||||| |||||||    
T  8483 tttccatcaatttagtacttgtacacgtggctgccttgttgacacgtgtacaagacaacaca 8422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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