View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21371_low_3 (Length: 375)
Name: NF21371_low_3
Description: NF21371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21371_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 130 - 365
Target Start/End: Original strand, 6729294 - 6729529
Alignment:
| Q |
130 |
atagatcgatgtgttaacaatcggctgagtgaaatagccataggtttgggtttgcgaaagaggtacggtaaggggggtagtgtgatgaagtgataacagt |
229 |
Q |
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| T |
6729294 |
atagatcgatgtgttaacaatcggctgagtgaaatagccataggtttgggtttgtgaaagaggtacggtaaggggggtagtgtgatgaagtgataacggt |
6729393 |
T |
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| Q |
230 |
gtagagaaaggaataaaatttgttgaggtagagaatggggttgttgcagatccagtgaaaggtgatgagtttgtgtgggttagaggtagtgtggtgttgg |
329 |
Q |
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| T |
6729394 |
gtagagaaaagaataaaatttgttgaggtagagaatggggttgttgcagatctagtgaagggtgatgagtttgtgtgggttagaggtagtgtggtgttgg |
6729493 |
T |
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| Q |
330 |
atataggagtaaggactggttcaagcacaggttctg |
365 |
Q |
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| T |
6729494 |
atataggagtaaggattggttcaagcacaggttctg |
6729529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 6729200 - 6729282
Alignment:
| Q |
18 |
atggtggtgtttggtacttgggataggggggtgtggagtaggaacaattgtagtgtggaggagttgaaacggcgagactgaaa |
100 |
Q |
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| T |
6729200 |
atggtggtgtttggtacgtgggatagggtggtgtggagtaggaaaaattgtagtgtggaggagttgaaatggcgaaactgaaa |
6729282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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