View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21371_low_4 (Length: 369)
Name: NF21371_low_4
Description: NF21371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21371_low_4 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 11880512 - 11880880
Alignment:
| Q |
1 |
ctattacaattctcctcctccacctgttgtgtatcctcgcccatatccctaccaccactcacttattgtgagggtggtcggtaaagtctacagcttcaga |
100 |
Q |
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| T |
11880512 |
ctattacaattctcctcctccacctgttgtgtatcctcacccatatccctaccaccactcacttattgtgagggtagtcggtaaagtctacagcttcaga |
11880611 |
T |
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| Q |
101 |
tgttatgattggaattatcctgcaaagtctcataacaagaaacatctcaaaggtacattacattacttaggaccggacctctttagagtaatgtgtttag |
200 |
Q |
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| T |
11880612 |
tgttatgattggaattatcctgcaaagtctcataacaagaaacatctcaaaggtacattacatttcttaggaccggacctctttagagtaatgtgtttag |
11880711 |
T |
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| Q |
201 |
agataatgcacaannnnnnnnnnnnnnatctcgtaaaggtttatttattataatcacaattttacttttgtcaaaaagaaaaacaattttactatatata |
300 |
Q |
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| T |
11880712 |
agataatgcacaattttttatttttttatctcgtaaaggtttatttattataatcacaatttcacttttgtcaaaaagaaaaacaattttactatatata |
11880811 |
T |
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| Q |
301 |
gttttaatcatttaacattttgatgaaaaaagaatacaattctctattacc-ttttactatgatatatat |
369 |
Q |
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| T |
11880812 |
gttttaatca-ttaacattttgatgtaaaaagaatacaattctctattacctttttactatgatatatat |
11880880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 11903012 - 11903380
Alignment:
| Q |
1 |
ctattacaattctcctcctccacctgttgtgtatcctcgcccatatccctaccaccactcacttattgtgagggtggtcggtaaagtctacagcttcaga |
100 |
Q |
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| T |
11903012 |
ctattacaattctcctcctccacctgttgtgtatcctcacccatatccctaccaccactcacttattgtgagggtagtcggtaaagtctacagcttcaga |
11903111 |
T |
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| Q |
101 |
tgttatgattggaattatcctgcaaagtctcataacaagaaacatctcaaaggtacattacattacttaggaccggacctctttagagtaatgtgtttag |
200 |
Q |
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| T |
11903112 |
tgttatgattggaattatcctgcaaagtctcataacaagaaacatctcaaaggtacattacatttcttaggaccggacctctttagagtaatgtgtttag |
11903211 |
T |
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| Q |
201 |
agataatgcacaannnnnnnnnnnnnnatctcgtaaaggtttatttattataatcacaattttacttttgtcaaaaagaaaaacaattttactatatata |
300 |
Q |
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| T |
11903212 |
agataatgcacaattttttatttttttatctcgtaaaggtttatttattataatcacaatttcacttttgtcaaaaagaaaaacaattttactatatata |
11903311 |
T |
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| Q |
301 |
gttttaatcatttaacattttgatgaaaaaagaatacaattctctattacc-ttttactatgatatatat |
369 |
Q |
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| T |
11903312 |
gttttaatca-ttaacattttgatgtaaaaagaatacaattctctattacctttttactatgatatatat |
11903380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 11889968 - 11890133
Alignment:
| Q |
1 |
ctattacaattctcctcctccacctgttgtgtatcctcgcccatatccctaccaccactcacttattgtgagggtggtcggtaaagtctacagcttcaga |
100 |
Q |
| |
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||||||||| ||||||||||||||||||||||||| || ||| ||||||||||||| || | || |||| ||| || ||||| ||||||||||||||| |
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| T |
11889968 |
ctattacaactctcctcctccacctgttgtgtatcatcaccctcatccctaccaccatgcattgatcgtgaaggtagtgggtaacgtctacagcttcaga |
11890067 |
T |
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| Q |
101 |
tgttatgattggaattatcctgcaaagtctcataacaagaaacatctcaaaggtacattacattac |
166 |
Q |
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| T |
11890068 |
tgttatgactgggagtatcctgaaaagtctcataacaagaaacacctcaaaggtacatcacattac |
11890133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 50 - 164
Target Start/End: Complemental strand, 52820772 - 52820658
Alignment:
| Q |
50 |
taccaccactcacttattgtgagggtggtcggtaaagtctacagcttcagatgttatgattggaattatcctgcaaagtctcataacaagaaacatctca |
149 |
Q |
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||||||||| || | ||||||| ||| || |||||||||||||||| || || ||| ||||| | ||||||| |||||||||| ||||||||||||||| |
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| T |
52820772 |
taccaccacccattgattgtgaaggtagtgggtaaagtctacagctacaagtgctataattgggagtatcctgaaaagtctcatgacaagaaacatctca |
52820673 |
T |
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| Q |
150 |
aaggtacattacatt |
164 |
Q |
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|||||| |||||||| |
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| T |
52820672 |
aaggtatattacatt |
52820658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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