View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21371_low_6 (Length: 255)
Name: NF21371_low_6
Description: NF21371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21371_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 65 - 242
Target Start/End: Original strand, 10808052 - 10808229
Alignment:
| Q |
65 |
gagatcttaacaattcatattttgtgaccttccagtatcgatggcgtgttatgatctttgacaacatcctccacatgtctccatttatcgattagtttgg |
164 |
Q |
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| T |
10808052 |
gagatcttaacaattcatattttgtgaccttccagtatcgatggcgtgttatgatctttgacaacttcctccacgtgtctccatttatcgattagtttgg |
10808151 |
T |
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| Q |
165 |
agcatttttctaggcggctttaatttctctaacaataaaacgtgctttctccctctctcctgtcactttactttcttc |
242 |
Q |
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| T |
10808152 |
cacatttttcaaggcggctttaatttttctaacaataaaacgcgctttctccctctctcctgtctctttactttcttc |
10808229 |
T |
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Back To:
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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 244
Target Start/End: Complemental strand, 23243497 - 23243274
Alignment:
| Q |
20 |
attcctttcactgtcaattatgggcgagctaacctcgctatctaggagatcttaacaattcatattttgtgaccttccagtatcgatggcgtgttatgat |
119 |
Q |
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| T |
23243497 |
attcctttttctgttagttatgggcgtgcttgcttcgctatctcggagatctgagcggttcatatttcgtgaccttccagtatcgaagacatgttgtaat |
23243398 |
T |
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| Q |
120 |
ctttgacaacatcctccacatgtctccatttatcgattagtttggagcatttttctaggcggctttaatttctctaacaataaaacgtgctttctccctc |
219 |
Q |
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| T |
23243397 |
ccc-gacaacttcctacacttgtctccattcatcgattagtttagcgtatttttttaggtggctttaatttctctcctcataaaacgtgctttcctcctc |
23243299 |
T |
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| Q |
220 |
tctcctgtcactttactttcttcat |
244 |
Q |
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| T |
23243298 |
atttatgtcactttactttcctcat |
23243274 |
T |
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