View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21371_low_8 (Length: 239)
Name: NF21371_low_8
Description: NF21371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21371_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 36164278 - 36164484
Alignment:
| Q |
15 |
caaagggaaaaggacggaagatattttacttgagaggagggaaggaaaaggaaaataaggatttaaatcgatgttttgtttgattgagagggnnnnnnnt |
114 |
Q |
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| T |
36164278 |
caaagggaaaaggacagaagatattttacttgagaggagggaaggaaaaggaaaataaggatttaaatcgatgttttgtttgattgagagggaaaaaaat |
36164377 |
T |
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| Q |
115 |
tagaagctacatttaagagtaaaaaatttcaatgcagataggctcatgctttctttaatacaaaattatcatacgttttagtgtaattaaatggcactaa |
214 |
Q |
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| T |
36164378 |
tagaagctacttttaagagtaaaaaatttcaatgcagataggctcatgctttctttaatacaaaattatcatacgttttagtgtaattaaatgtcactaa |
36164477 |
T |
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| Q |
215 |
gtaatgt |
221 |
Q |
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| T |
36164478 |
gtgatgt |
36164484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 194
Target Start/End: Original strand, 3657014 - 3657065
Alignment:
| Q |
143 |
tcaatgcagataggctcatgctttctttaatacaaaattatcatacgtttta |
194 |
Q |
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| T |
3657014 |
tcaatgcagacaggctcgtgatttctttaatacaagattatcatacgtttta |
3657065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 3644443 - 3644479
Alignment:
| Q |
147 |
tgcagataggctcatgctttctttaatacaaaattat |
183 |
Q |
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| T |
3644443 |
tgcagagaggctcatgctttctataatacaaaattat |
3644479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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