View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21371_low_9 (Length: 237)
Name: NF21371_low_9
Description: NF21371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21371_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 8e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 11880888 - 11881108
Alignment:
| Q |
5 |
ttattcaaatctatatatccaacttaatttccatccaaaa---tacaaaacatagggtgctttgaactcctgcagcatcacatgaataaataaaaacaat |
101 |
Q |
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||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
11880888 |
ttattcaaatctatatatccaacctaatttccatccaaaaaaatagaaaacatagggtgctttgaacgcctgcagcatcacatgaataaataaaaacaat |
11880987 |
T |
|
| Q |
102 |
caataatcaaccttgttctaatttattttagacactgattgttaaacatactgctcttttaattacannnnnnnnaaagatgctcttttaattatattgt |
201 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
11880988 |
caataatcaaccttgttctaatttattttagacagcgattgttaagcatactgctcttttaattacattttttttaaagatgctcttttaattatattgt |
11881087 |
T |
|
| Q |
202 |
cctaatataatatgtgtcttt |
222 |
Q |
| |
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||||||||||||||||||||| |
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| T |
11881088 |
cctaatataatatgtgtcttt |
11881108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 11903388 - 11903608
Alignment:
| Q |
5 |
ttattcaaatctatatatccaacttaatttccatccaaaa---tacaaaacatagggtgctttgaactcctgcagcatcacatgaataaataaaaacaat |
101 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
11903388 |
ttattcaaatctatatatccaacctaatttccatccaaaaaaatagaaaacatagggtgctttgaacgcctgcagcatcacatgaataaataaaaacaat |
11903487 |
T |
|
| Q |
102 |
caataatcaaccttgttctaatttattttagacactgattgttaaacatactgctcttttaattacannnnnnnnaaagatgctcttttaattatattgt |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
11903488 |
caataatcaaccttgttctaatttattttagacagcgattgttaagcatactgctcttttaattacattttttttaaagatgctcttttaattatattgt |
11903587 |
T |
|
| Q |
202 |
cctaatataatatgtgtcttt |
222 |
Q |
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||||||||||||||||||||| |
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| T |
11903588 |
cctaatataatatgtgtcttt |
11903608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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