View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21372_high_10 (Length: 359)
Name: NF21372_high_10
Description: NF21372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21372_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 19102727 - 19102371
Alignment:
| Q |
1 |
acaaccggaatggctgcattgtcaatagattgatgttcttctgccacctccaatggcacaacttcatgagtaatgggcgcaacagtggctgcctgttgtg |
100 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
19102727 |
acaatcggaatggcagcattgtcaatagattgatgttcttctgccacctccaatggcacaacttcatgagtaatgggcgcaacagtggatgcctattgtg |
19102628 |
T |
|
| Q |
101 |
gtgtctgttgttgcgtggtttccgggggaggtgggctgtttgtatgctccaagtgctgcgttgtatctccttcaatggtgtcgaaccccaaattttgatg |
200 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
19102627 |
gtgtctgttgttgcatggtttccgggggaggtgggctgtttgtatgctccaagtgctgcgttgtatctccttcaatggtgtcggaccccaaattttgatg |
19102528 |
T |
|
| Q |
201 |
ttcagatggtacattcacagtggccgagggtgattgctcatccactgcaataatttcgtgattcacttcctcttgtggaatatccttttgttgtaccgta |
300 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
19102527 |
ttcagatggtacattcacagtgcccgagggtgattgctcatccactgcaataatttcgtgattcactgcctcttgtggaatatccttttgctgtaccgta |
19102428 |
T |
|
| Q |
301 |
atggtatgtgcctctgcttcagtaattactgggtccttatttgtctgtggtgctgca |
357 |
Q |
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| T |
19102427 |
atggtatgtgcctctgcttcagtaattactgggtccttatttgtctaaggtgctgca |
19102371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 36030777 - 36031105
Alignment:
| Q |
1 |
acaaccggaatggctgcattgtcaatagattgatgttcttctgccacctccaatggcacaacttcatgagtaatgggcgcaacagtggctgcctgttgtg |
100 |
Q |
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| T |
36030777 |
acaaccggaatggcaacattgtcaatagattgatgtacttctgccacctccaacaacacaacttcatgaggaataggcgcagcagtggcttcttgttgtg |
36030876 |
T |
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| Q |
101 |
gtgtctgttgttgcgtggtttccgggggaggtgggctgtttgtatgctccaagtgctgcgttgtatctccttcaatggtgtcgaaccccaaattttgatg |
200 |
Q |
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|||||| ||||||||||||||||| |||||||||| ||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||| |
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| T |
36030877 |
gtgtctattgttgcgtggtttccgagggaggtgggttgtttgtatgctccaagtgatgtgttgtatctccttcaatggtgtcggaccccaaattttgatg |
36030976 |
T |
|
| Q |
201 |
ttcagatggtacattcacagtggccgagggtgattgctcatccactgcaataatttcgtgattcacttcctcttgtggaatatccttttgttgtaccgta |
300 |
Q |
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|||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||| ||||||||||| | || |||| |||| |
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| T |
36030977 |
ttcagatggtaccttcacagtggccgagggtgattgctcctccactgcaataattccgtgattcactgcctcctgtggaatatcttgctgctgtatcgta |
36031076 |
T |
|
| Q |
301 |
atggtatgtgcctctgcttcagtaattac |
329 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
36031077 |
atggtatgtgcctctgcttcagtaattac |
36031105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 206 - 357
Target Start/End: Original strand, 11868789 - 11868943
Alignment:
| Q |
206 |
atggtacattcacagtggccgagggtgattgctcat---ccactgcaataatttcgtgattcacttcctcttgtggaatatccttttgttgtaccgtaat |
302 |
Q |
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||||||||||| ||||||||||| |||||||||| | ||||||||||||||| |||||||||| |||||| ||||||||| | ||||||||||||||| |
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| T |
11868789 |
atggtacattcgcagtggccgagcgtgattgctcctgttccactgcaataattttgtgattcactgcctcttatggaatatcttgttgttgtaccgtaat |
11868888 |
T |
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| Q |
303 |
ggtatgtgcctctgcttcagtaattactgggtccttatttgtctgtggtgctgca |
357 |
Q |
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|||||||||||||||||||| |||||| ||||||||||||||||| ||||||||| |
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| T |
11868889 |
ggtatgtgcctctgcttcagcaattaccgggtccttatttgtctgaggtgctgca |
11868943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 357
Target Start/End: Original strand, 21164035 - 21164238
Alignment:
| Q |
148 |
tccaagtgctgcgttgtatctccttcaatggtgtcgaaccccaaattttgatgttcagatggtacattcacagtggccgagggtgattgctcatccactg |
247 |
Q |
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|||||||||||| | |||||||||||||||||||| ||||||| ||||| || || || || || |||||||||| ||| ||||| ||||| |
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| T |
21164035 |
tccaagtgctgccctatatctccttcaatggtgtcggaccccaagttttgttgctc------taaatccatagtggccgagagtgtctgctcctccacaa |
21164128 |
T |
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| Q |
248 |
caataatttcgtgattcacttcctcttgtggaatatccttttgttgtaccgtaatggtatgtgcctctgcttcagtaattactgggtccttatttgtctg |
347 |
Q |
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||| |||||||||||||| |||| | || |||| | || |||| ||||||| |||||| ||||||||||||||||| || | | |||||||||| |
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| T |
21164129 |
aaatggtttcgtgattcactacctcatttgtggtatcttgctgctgtagtgtaatgggatgtgcttctgcttcagtaattaccggattcgtatttgtctg |
21164228 |
T |
|
| Q |
348 |
tggtgctgca |
357 |
Q |
| |
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||| ||||| |
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| T |
21164229 |
aggtactgca |
21164238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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