View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21372_high_12 (Length: 346)
Name: NF21372_high_12
Description: NF21372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21372_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 47380686 - 47380344
Alignment:
| Q |
1 |
ttttcaatctctcctcaaattctccacgatatttagttccagcaacaagtagacccatatccagggttataacctaaatcatgcagaatgaggctttcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47380686 |
ttttcaatctctcctcaaattctccacgatatttagttccagcaacaagtagacccatatccagggttataacctaaatcatgcagaatgaggctttcat |
47380587 |
T |
|
| Q |
101 |
gtcaagacaccnnnnnnntatgctaaaattccatatctaagaacttaaaacggacccaatacagaaactcaaaacaacaacacaatcatatgactaaata |
200 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47380586 |
gtcaagacgccaaaaaa-tatgctaaaattccatatctaagaacttaaaacggacccaatacagaaactcaaaacaacaacacaatcatatgactaaata |
47380488 |
T |
|
| Q |
201 |
caacgcaaggtgctccagaactagtctaaccatcttgatgcaagaaagttactttccagtcaaaatgtagtattggtagtaaatgggcaaatatgttgaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
47380487 |
caacgcaaggtgctccagaactagtctaaccatcttgatgcaagaaagttactttccagtcaaaatgtagtattggaagtaaatgggcaaatatgttgaa |
47380388 |
T |
|
| Q |
301 |
atcatat--atgcattgagcaacttgaacatgtctgtggtgctg |
342 |
Q |
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||||||| || ||||||||||||||||||||| |||||||||| |
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| T |
47380387 |
atcatattaatacattgagcaacttgaacatgtttgtggtgctg |
47380344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 6 - 342
Target Start/End: Complemental strand, 47816152 - 47815813
Alignment:
| Q |
6 |
aatctctcctcaaattctccacgatatttagttccagcaacaagtagacccatatccagggttataacctaaatcatgcagaatgaggctttcatgtca- |
104 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
47816152 |
aatctctcctcaaattctccacgatatttagatccagcaacaagtagacccatatctagggttataacctaaatcatgcagaatgaggctttcatgtcac |
47816053 |
T |
|
| Q |
105 |
---agacaccnnnnnnntatgctaaaattccatatctaagaacttaaaacggacccaatacagaaactcaaaacaacaacacaatcatatgactaaatac |
201 |
Q |
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||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47816052 |
tcaagacaccaaaaaa-tatgctaaaattccatatctaagaacttaaaacagacccaatacagaaactcaaaacaacaacacaatcatatgactaaatac |
47815954 |
T |
|
| Q |
202 |
aacgcaaggtgctccagaactagtctaaccatcttgatgcaagaaagttactttccagtcaaaatgtagtattggtagtaaatgggcaaatatgttgaaa |
301 |
Q |
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|| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| | |||||||||||| |
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| T |
47815953 |
aa-ggaaggtgcttcagaactagtctaaccatcttgatgcaagaaagttactttccagtcaaaatgtagtattagaagtaaatggac-aatatgttgaaa |
47815856 |
T |
|
| Q |
302 |
tcatat--atgcattgagcaacttgaacatgtctgtggtgctg |
342 |
Q |
| |
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||||| || |||||| |||||||||||||| || ||||||| |
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| T |
47815855 |
acatattaatacattgatcaacttgaacatgtttgcggtgctg |
47815813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 45112776 - 45112703
Alignment:
| Q |
3 |
ttcaatctctcctcaaattctccacgatatttagttccagcaacaagtagacccatatccagggttataaccta |
76 |
Q |
| |
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||||| ||||||||||| || ||||| ||||| ||||| || ||||| | |||||| || |||||||||||||| |
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| T |
45112776 |
ttcaacctctcctcaaactcaccacggtatttggttccggctacaagcaaacccatgtctagggttataaccta |
45112703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 6 - 342
Target Start/End: Complemental strand, 17717892 - 17717552
Alignment:
| Q |
6 |
aatctctcctcaaattctccacgatatttagttccagcaacaagtagacccatatccagggttataacctaaatcatgcagaatgaggctttcatgtca- |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
17717892 |
aatctctcctcaaattctccacgatatttagatccagcaacaagtagacccatatctagggttataacctaaatcatgcagaatgaggctttcatgtcac |
17717793 |
T |
|
| Q |
105 |
---agacaccnnnnnnntatgctaaaattccatatctaagaacttaaaacggacccaatacagaaactcaaaa-caacaacacaatcatatgactaaata |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
17717792 |
tcaagacaccaaaaaa-tatgctaaaattccatatctaagaacttaaaacagacccaatacagaaactcaaaaacaacaacacaatcatatgactaaata |
17717694 |
T |
|
| Q |
201 |
caacgcaaggtgctccagaactagtctaaccatcttgatgcaagaaagttactttccagtcaaaatgtagtattggtagtaaatgggcaaatatgttgaa |
300 |
Q |
| |
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||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| | ||||||||||| |
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| T |
17717693 |
caagg-aaggtgcttcagaactagtctaaccatcttgatgcaagaaagttactttccagtcaaaatgtagtattagaagtaaatggac-aatatgttgaa |
17717596 |
T |
|
| Q |
301 |
atcatat--atgcattgagcaacttgaacatgtctgtggtgctg |
342 |
Q |
| |
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| ||||| || |||||| |||||||||||||| || ||||||| |
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| T |
17717595 |
aacatattaatacattgaacaacttgaacatgtttgcggtgctg |
17717552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 40243573 - 40243470
Alignment:
| Q |
1 |
ttttcaatctctcctcaaattctccacgatatttagttccagcaacaagtagacccatatccagggttataacctaaatcatgcagaatgaggctttcat |
100 |
Q |
| |
|
|||||||||| || |||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||| ||||||||| |
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| T |
40243573 |
ttttcaatctttcttcaaattctccacggtatttagttccagctacaagtagacccatatctagggttataacctgcatcatgcagaacaaggctttcac |
40243474 |
T |
|
| Q |
101 |
gtca |
104 |
Q |
| |
|
|||| |
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|
| T |
40243473 |
gtca |
40243470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 224 - 339
Target Start/End: Original strand, 34055921 - 34056037
Alignment:
| Q |
224 |
gtctaaccatcttgatgcaagaaagttactttccagtcaaaatgtagtattggtagtaaatgggcaaatatgttgaaatcatat--atgcattgagcaac |
321 |
Q |
| |
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|||||||||||||||| ||||| | |||||| ||||||||||||||||||| | ||||||||| | |||||||||||||||||| || || ||||||| |
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| T |
34055921 |
gtctaaccatcttgatacaagacaattacttcccagtcaaaatgtagtattagaagtaaatggac-aatatgttgaaatcatattaataaatggagcaac |
34056019 |
T |
|
| Q |
322 |
ttgaacatgtctgtggtg |
339 |
Q |
| |
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|||||||||| ||||||| |
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| T |
34056020 |
ttgaacatgtttgtggtg |
34056037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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