View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21372_high_17 (Length: 331)
Name: NF21372_high_17
Description: NF21372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21372_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 25641023 - 25641307
Alignment:
| Q |
1 |
attggacttcttacagaacttcaattcttgagcttgcagaactgtaacagtctggtctgctttgattttggcagtgtatcaaagttaagttctctaagag |
100 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||| ||| ||||||||| |||| |
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| T |
25641023 |
attggacttcttagagaacttcaattcttgagcttgcagaactgtaccagtctggtctgctttgagtttggcagagtatcagagtcaagttctctcagag |
25641122 |
T |
|
| Q |
101 |
ttatgcgtctctctggttgcacgaaacttgaaaataccccagattttaagggattatcaaatcttgagtatcttgacatggatcaatgcacaagtatata |
200 |
Q |
| |
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|| || |||||||||||||||| |||||||||||||| ||||||||| || ||||| |||||||||||||||||||||||||||||| |||||| |||| |
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| T |
25641123 |
ttctgtgtctctctggttgcacaaaacttgaaaatactccagattttgagaaattattaaatcttgagtatcttgacatggatcaatgtacaagtttata |
25641222 |
T |
|
| Q |
201 |
tacaattcataaatctgttggggatcttacaaagcttagattcttaagcttgagaggctgcatgaatcttgtcagaatacctgac |
285 |
Q |
| |
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|| |||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||| |
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| T |
25641223 |
taaaattgataaatctattggggatcttacaaagcttagattcttaagtttgagaggctgcacaaatcttgtcatcatacctgac |
25641307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 25448267 - 25448551
Alignment:
| Q |
1 |
attggacttcttacagaacttcaattcttgagcttgcagaactgtaacagtctggtctgctttgattttggcagtgtatcaaagttaagttctctaagag |
100 |
Q |
| |
|
|||||||||||| ||||||| ||||||||| ||||| ||||||| ||| | || || ||| |||||||| || | || ||||| || ||||||| |
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| T |
25448267 |
attggacttcttgaagaacttgtattcttgagtttgcaaaactgtactagtttagtgagccttgtttttggcaatgcaccagtattaaggtcactaagag |
25448366 |
T |
|
| Q |
101 |
ttatgcgtctctctggttgcacgaaacttgaaaataccccagattttaagggattatcaaatcttgagtatcttgacatggatcaatgcacaagtatata |
200 |
Q |
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|| |||||||||||| |||||| ||||||| ||| || |||||||| | ||| | || |||| ||||| |||| ||||||| ||| ||||| ||| |
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| T |
25448367 |
ttttgcgtctctctgattgcacaaaacttggaaacacaccagatttaagtggaacgttaattcttcagtatgttgatatggatcgatgtgcaagtttatc |
25448466 |
T |
|
| Q |
201 |
tacaattcataaatctgttggggatcttacaaagcttagattcttaagcttgagaggctgcatgaatcttgtcagaatacctgac |
285 |
Q |
| |
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|| |||||| ||||| |||||| |||| ||||||||| |||| |||| || |||| ||||| |||||||| ||||||||||| |
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| T |
25448467 |
cacgattcatgaatctattggggctcttgcaaagcttaaattcataagttttagagactgcacaaatcttgttggaatacctgac |
25448551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 25433176 - 25432892
Alignment:
| Q |
1 |
attggacttcttacagaacttcaattcttgagcttgcagaactgtaacagtctggtctgctttgattttggcagtgtatcaaagttaagttctctaagag |
100 |
Q |
| |
|
||||||||||||||| ||||| ||||||||| ||||| ||||||| | ||| || | |||||||||| | || | | | ||| | ||||||| || |
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| T |
25433176 |
attggacttcttacaaaacttgtattcttgagtttgcaaaactgtagaaatctagttaaccttgattttggaaatgcagctacattatggtctctaaaag |
25433077 |
T |
|
| Q |
101 |
ttatgcgtctctctggttgcacgaaacttgaaaataccccagattttaagggattatcaaatcttgagtatcttgacatggatcaatgcacaagtatata |
200 |
Q |
| |
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|| || ||||||||| |||||| |||||||||||||| || ||||||| |||||||||| ||| | |||||||| |||||| ||| ||| | ||| |
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| T |
25433076 |
ttttgtgtctctctgattgcacaaaacttgaaaatactcctgattttagtggattatcaattctccaatatcttgatatggattgatgtgcaaatttatc |
25432977 |
T |
|
| Q |
201 |
tacaattcataaatctgttggggatcttacaaagcttagattcttaagcttgagaggctgcatgaatcttgtcagaatacctgac |
285 |
Q |
| |
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| |||| | |||||||||||| |||||| |||||| ||||||||| ||||||| || | |||||||| ||||||||||| |
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| T |
25432976 |
catgattcgtgaatctgttggggctcttacgaagcttgaattcttaagtttgagagattgtacaaatcttgttggaatacctgac |
25432892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 25475683 - 25475412
Alignment:
| Q |
1 |
attggacttcttacagaacttcaattcttgagcttgcagaactgtaacagtctggtctgctttgattttggcagtgtatcaaagttaagttctctaagag |
100 |
Q |
| |
|
|||||||||||||| |||||| ||||||||| ||||||||||||| ||||| || || |||||||||| | | | || | ||| | ||||||| || |
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| T |
25475683 |
attggacttcttacggaacttgtattcttgagtttgcagaactgtagtagtctagttagccttgattttggaaattcagcacaattatggtctctaaaag |
25475584 |
T |
|
| Q |
101 |
ttatgcgtctctctggttgcacgaaacttgaaaataccccagattttaagggattatcaaatcttgagtatcttgacatggatcaatgcacaagtatata |
200 |
Q |
| |
|
|| |||||||||||| |||||| |||| ||||| || || ||||| | ||||| ||| |||||||||| ||||| | ||| ||||| ||| |
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| T |
25475583 |
ttttgcgtctctctgattgcacacaactggaaaacacaccggatttcagtggattgagttttctacagtatcttgatatggaccgatgtgcaagtttatc |
25475484 |
T |
|
| Q |
201 |
tacaattcataaatctgttggggatcttacaaagcttagattcttaagcttgagaggctgcatgaatcttgt |
272 |
Q |
| |
|
||||||||| ||||| |||||| |||| |||| ||||||||| |||| |||| || ||||| |||||||| |
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| T |
25475483 |
aacaattcatgaatctattggggctcttgcaaatcttagattcctaagtttgaaagactgcacaaatcttgt |
25475412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 284
Target Start/End: Original strand, 25630507 - 25630562
Alignment:
| Q |
229 |
acaaagcttagattcttaagcttgagaggctgcatgaatcttgtcagaatacctga |
284 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||| |||||| ||||||||||||| |
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| T |
25630507 |
acaaagcttagattcttaggtttgagaggctgcacaaatcttttcagaatacctga |
25630562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 2 - 121
Target Start/End: Complemental strand, 496941 - 496822
Alignment:
| Q |
2 |
ttggacttcttacagaacttcaattcttgagcttgcagaactgtaacagtctggtctgctttgattttggcagtgtatcaaagttaagttctctaagagt |
101 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||||| || |||| |||| | ||||||||||||||||||| || | ||||| ||||| |
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|
| T |
496941 |
ttggacttcttacagaacttgtattcttgagtttgcagaactgtaccaatctgacctgcctcgattttggcagtgtatcaagagtatggtctctcagagt |
496842 |
T |
|
| Q |
102 |
tatgcgtctctctggttgca |
121 |
Q |
| |
|
| |||||||||||||||||| |
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|
| T |
496841 |
tctgcgtctctctggttgca |
496822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 35102779 - 35102597
Alignment:
| Q |
1 |
attggacttcttacagaacttcaattcttgagcttgcagaactgtaacagtctggtctgctttgattttggcagtgtatcaaagttaagttctctaagag |
100 |
Q |
| |
|
||||||| ||||||||||||| ||||| || ||||| ||||| | |||| ||||| | | |||||||| | ||||||||| ||| |||| | |||| |
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|
| T |
35102779 |
attggacatcttacagaacttgttttcttaagtttgcaaaactgcagcagtttggtcaacctcgattttggtattgtatcaaatttatattctttgagag |
35102680 |
T |
|
| Q |
101 |
ttatgcgtctctctggttgcacgaaacttgaaaataccccagattttaagggattatcaaatcttgagtatcttgacatggat |
183 |
Q |
| |
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|| | || |||||||||||||| ||||||||||| || |||||||||| || ||||||||||||||| |||||||||||| |
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|
| T |
35102679 |
ttctacgcctctctggttgcacaaaacttgaaaagacgccagattttaccggggcatcaaatcttgagtaccttgacatggat |
35102597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 25 - 256
Target Start/End: Complemental strand, 35095469 - 35095238
Alignment:
| Q |
25 |
ttcttgagcttgcagaactgtaacagtctggtctgctttgattttggcagtgtatcaaagttaagttctctaagagttatgcgtctctctggttgcacga |
124 |
Q |
| |
|
||||| || ||||| ||||| | |||| ||||| | |||||||||| ||||||||||| ||| ||||| | |||||| | || |||||||||||||| | |
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|
| T |
35095469 |
ttcttaagtttgcaaaactgcagcagtttggtcaaccttgattttggtagtgtatcaaatttatgttctttgagagttctacgcctctctggttgcacaa |
35095370 |
T |
|
| Q |
125 |
aacttgaaaataccccagattttaagggattatcaaatcttgagtatcttgacatggatcaatgcacaagtatatatacaattcataaatctgttgggga |
224 |
Q |
| |
|
| |||||||| || ||| |||| | ||| ||||||||||||||| ||||| |||||| ||| |||||| ||| | | |||| ||||| | ||| |
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| T |
35095369 |
agcttgaaaagacgccaaatttcatgggggcatcaaatcttgagtaccttgatatggatggatgtacaagtttattcaaagttcactaatctatcgggcc |
35095270 |
T |
|
| Q |
225 |
tcttacaaagcttagattcttaagcttgagag |
256 |
Q |
| |
|
|||| ||||||| |||||||| || ||||||| |
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|
| T |
35095269 |
tctttcaaagctcagattcttgagtttgagag |
35095238 |
T |
|
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