View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21372_high_18 (Length: 329)

Name: NF21372_high_18
Description: NF21372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21372_high_18
NF21372_high_18
[»] chr3 (5 HSPs)
chr3 (131-329)||(32706130-32706328)
chr3 (7-82)||(32706377-32706452)
chr3 (165-267)||(881013-881116)
chr3 (132-177)||(35775636-35775681)
chr3 (12-69)||(33756094-33756151)
[»] chr4 (5 HSPs)
chr4 (132-293)||(35530041-35530202)
chr4 (157-275)||(53461355-53461476)
chr4 (33-78)||(55680646-55680691)
chr4 (132-188)||(11064216-11064271)
chr4 (132-188)||(33013335-33013390)
[»] chr1 (10 HSPs)
chr1 (132-264)||(30883057-30883189)
chr1 (132-259)||(3954928-3955058)
chr1 (132-216)||(19415665-19415751)
chr1 (132-192)||(16426410-16426470)
chr1 (254-327)||(30882964-30883039)
chr1 (132-235)||(3387633-3387738)
chr1 (15-80)||(30883239-30883304)
chr1 (148-188)||(46083252-46083292)
chr1 (23-82)||(10171653-10171712)
chr1 (148-189)||(35677772-35677813)
[»] chr2 (7 HSPs)
chr2 (132-235)||(16661256-16661361)
chr2 (24-81)||(41848919-41848976)
chr2 (33-82)||(9929540-9929589)
chr2 (44-82)||(27003955-27003993)
chr2 (150-235)||(4748159-4748246)
chr2 (33-81)||(4748264-4748312)
chr2 (33-77)||(32201032-32201076)
[»] chr5 (3 HSPs)
chr5 (137-326)||(25224057-25224239)
chr5 (137-326)||(25288213-25288395)
chr5 (15-71)||(32676849-32676905)
[»] chr8 (4 HSPs)
chr8 (132-258)||(18393606-18393735)
chr8 (47-82)||(15132171-15132206)
chr8 (148-189)||(27401817-27401858)
chr8 (49-82)||(37855085-37855118)
[»] chr7 (3 HSPs)
chr7 (132-189)||(27993880-27993937)
chr7 (174-247)||(43438954-43439027)
chr7 (132-189)||(43837317-43837374)
[»] scaffold0325 (1 HSPs)
scaffold0325 (44-82)||(12798-12836)
[»] chr6 (4 HSPs)
chr6 (33-82)||(56917-56966)
chr6 (132-189)||(6821004-6821061)
chr6 (33-78)||(34013446-34013491)
chr6 (34-82)||(19294295-19294343)


Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 131 - 329
Target Start/End: Complemental strand, 32706328 - 32706130
Alignment:
Q  131 gtaaaagatctaaatcaagaatcaaaatatatacatgtgcatttaaattgagcaatttacttgtttaaaaagttccaaaacaagattggatagtatttga 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  32706328 gtaaaagatctaaatcaagaatcaaaatatatacatgtgcatttaaattgagcaatttacttctttaaaaagttccaaaacaagattggatagtatttga 32706229  T
Q  231 ccttttttatccgtctactaacaaaaaagattaaaatattgttaacaaaattaatgtctttaacccccatcattgatcaacattgcctccacacatttt 329  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32706228 ccttttttatccgtctactaacaaaaaagattaaaatattgttaacaaaattaatgtctttaacccccatcattgatcaacattgcctccacacatttt 32706130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 32706452 - 32706377
Alignment:
Q  7 ggagcacagacacctaacacgacgctgacacctcgagactgctaatgtaaaaaatataggacaccaacaccgctac 82  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  32706452 ggagcacagacacctaacacgacactgacacctcgagactgctaatgtaaaaaatataggacaccaacactgctac 32706377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 165 - 267
Target Start/End: Complemental strand, 881116 - 881013
Alignment:
Q  165 atgtgcatttaaattgagcaatttacttgtttaaaaagttccaaaacaagattggatagtatttgacct-tttttatccgtctactaacaaaaaagatta 263  Q
    |||||||| |||||||||||||||  |   ||| ||||||| ||||||| ||||||| ||||||||||| ||||||| | |||||||||||||| |||||    
T  881116 atgtgcatctaaattgagcaatttcttcccttacaaagttctaaaacaaaattggattgtatttgacctctttttatgcatctactaacaaaaatgatta 881017  T
Q  264 aaat 267  Q
    ||||    
T  881016 aaat 881013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 132 - 177
Target Start/End: Original strand, 35775636 - 35775681
Alignment:
Q  132 taaaagatctaaatcaagaatcaaaatatatacatgtgcatttaaa 177  Q
    ||||||||||||||| || ||||||||| |||||||||||||||||    
T  35775636 taaaagatctaaatcgagtatcaaaatacatacatgtgcatttaaa 35775681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 33756094 - 33756151
Alignment:
Q  12 acagacacctaacacgacgctgacacctcgagactgctaatgtaaaaaatataggaca 69  Q
    |||||||||| ||||||| | ||||||| || |||||||||||||||||  |||||||    
T  33756094 acagacacctgacacgacacagacacctggacactgctaatgtaaaaaacttaggaca 33756151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 5e-53; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 132 - 293
Target Start/End: Original strand, 35530041 - 35530202
Alignment:
Q  132 taaaagatctaaatcaagaatcaaaatatatacatgtgcatttaaattgagcaatttacttgtttaaaaagttccaaaacaagattggatagtatttgac 231  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| || |||||||| ||| ||||||| |||||||||| ||||||    
T  35530041 taaaagatctaaatcgagaatcaaaatatatacatgtgcatctaaattgagcaatttatttctttaaaaatttctaaaacaatattggatagtttttgac 35530140  T
Q  232 cttttttatccgtctactaacaaaaaagattaaaatattgttaacaaaattaatgtctttaa 293  Q
    ||||||||||||||||||| || | ||||||||||||||||||  ||| |||||||||||||    
T  35530141 cttttttatccgtctactatcagagaagattaaaatattgttataaaagttaatgtctttaa 35530202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 157 - 275
Target Start/End: Original strand, 53461355 - 53461476
Alignment:
Q  157 atatatacatgtgcatttaaattgagcaatttacttgtttaaaaagttccaaaacaagattggatagtatttgac---cttttttatccgtctactaaca 253  Q
    |||||||||||||||| |||| |||||||| || || |||||||||||| |||||||||||||||| ||||||||    |||||||||| ||||| ||||    
T  53461355 atatatacatgtgcatctaaaatgagcaatctatttctttaaaaagttctaaaacaagattggataatatttgacatttttttttatccatctacaaaca 53461454  T
Q  254 aaaaagattaaaatattgttaa 275  Q
    |||||||||||||| |||||||    
T  53461455 aaaaagattaaaatgttgttaa 53461476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 55680646 - 55680691
Alignment:
Q  33 gacacctcgagactgctaatgtaaaaaatataggacaccaacaccg 78  Q
    ||||| |||| || ||||||||||||||||||||||||| ||||||    
T  55680646 gacacgtcgacaccgctaatgtaaaaaatataggacaccgacaccg 55680691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 11064271 - 11064216
Alignment:
Q  132 taaaagatctaaatcaagaatcaaaatatatacatgtgcatttaaattgagcaattt 188  Q
    ||||||||||||||  |||||||||||| ||| |||||||| |||||||| ||||||    
T  11064271 taaaagatctaaattgagaatcaaaatacata-atgtgcatctaaattgaacaattt 11064216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 33013390 - 33013335
Alignment:
Q  132 taaaagatctaaatcaagaatcaaaatatatacatgtgcatttaaattgagcaattt 188  Q
    ||||||||||||||  ||||||| || |||| ||| |||||||||||||||||||||    
T  33013390 taaaagatctaaattgagaatcataa-atattcatatgcatttaaattgagcaattt 33013335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 132 - 264
Target Start/End: Complemental strand, 30883189 - 30883057
Alignment:
Q  132 taaaagatctaaatcaagaatcaaaatatatacatgtgcatttaaattgagcaatttacttgtttaaaaagttccaaaacaagattggatagtatttgac 231  Q
    ||||||||||||||| |||||||||||||||||| | |||| |||||||| ||||||  || |||| ||  ||| |||||||||||| ||||||||||||    
T  30883189 taaaagatctaaatcgagaatcaaaatatatacacgggcatctaaattgaacaatttctttctttacaagtttctaaaacaagattgaatagtatttgac 30883090  T
Q  232 cttttttatccgtctactaacaaaaaagattaa 264  Q
    ||||||||||| |||||||||||||||||||||    
T  30883089 cttttttatccatctactaacaaaaaagattaa 30883057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 259
Target Start/End: Original strand, 3954928 - 3955058
Alignment:
Q  132 taaaagatctaaatcaagaatcaaaatatatacatgtgcatttaaattgagcaatttacttgttt--aaaaagttccaaaacaagattggatagtatttg 229  Q
    ||||||||| ||||  ||||||| |||| |||||||||||| ||| |||||||||||| ||  ||  ||||||||| |||| |||||  ||| |||||||    
T  3954928 taaaagatcaaaattgagaatcagaatacatacatgtgcatctaacttgagcaatttatttcattaaaaaaagttctaaaataagatacgatcgtatttg 3955027  T
Q  230 accttt-tttatccgtctactaacaaaaaag 259  Q
    |||||| ||||||| ||||||| | ||||||    
T  3955028 acctttatttatccatctactatcgaaaaag 3955058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 216
Target Start/End: Complemental strand, 19415751 - 19415665
Alignment:
Q  132 taaaagatctaaatcaagaatcaaaatatatacatgtgcatttaaattgagcaatttactt--gtttaaaaagttccaaaacaagat 216  Q
    ||||| ||| |||| |||||| ||||||||||||||||||| ||||||||||||||||  |   |||||||||||| ||||||||||    
T  19415751 taaaacatcaaaattaagaattaaaatatatacatgtgcatctaaattgagcaatttatgtcattttaaaaagttctaaaacaagat 19415665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 132 - 192
Target Start/End: Original strand, 16426410 - 16426470
Alignment:
Q  132 taaaagatctaaatcaagaatcaaaatatatacatgtgcatttaaattgagcaatttactt 192  Q
    |||||||| ||||| ||||||||||||| |||||| ||||| ||| |||||||||||||||    
T  16426410 taaaagatataaattaagaatcaaaatacatacatatgcatctaacttgagcaatttactt 16426470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 254 - 327
Target Start/End: Complemental strand, 30883039 - 30882964
Alignment:
Q  254 aaaaagattaaaatattgttaacaaaattaatgtctttaa--cccccatcattgatcaacattgcctccacacatt 327  Q
    ||||||| |||||| ||||||| ||| |||||||||||||  ||||| ||||||||||||| ||| ||||||||||    
T  30883039 aaaaagaataaaatgttgttaaaaaacttaatgtctttaatccccccctcattgatcaacactgcttccacacatt 30882964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 235
Target Start/End: Original strand, 3387633 - 3387738
Alignment:
Q  132 taaaagatctaaatcaagaatcaaaatatatacatgtgcatttaaattgagcaatttacttgttt--aaaaagttccaaaacaagattggatagtatttg 229  Q
    ||||| ||||||||  |||||||||||| |||||| ||||||||| |||| ||||||| ||  ||  ||||||||| | ||||||||   ||||||||||    
T  3387633 taaaatatctaaattgagaatcaaaatacatacatatgcatttaacttgaacaatttattttattaaaaaaagttctataacaagataaaatagtatttg 3387732  T
Q  230 accttt 235  Q
    ||||||    
T  3387733 accttt 3387738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 30883304 - 30883239
Alignment:
Q  15 gacacctaacacgacgctgacacctcgagactgctaatgtaaaaaatataggacaccaacaccgct 80  Q
    ||||||| ||||||| ||||||| || | || |||||||||||||| |||||||||| ||||||||    
T  30883304 gacacctgacacgacactgacacgtcaacaccgctaatgtaaaaaacataggacaccgacaccgct 30883239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 46083252 - 46083292
Alignment:
Q  148 agaatcaaaatatatacatgtgcatttaaattgagcaattt 188  Q
    ||||| ||||| |||||||||||||||||||||||||||||    
T  46083252 agaatgaaaatttatacatgtgcatttaaattgagcaattt 46083292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 10171712 - 10171653
Alignment:
Q  23 acacgacgctgacacctcgagactgctaatgtaaaaaatataggacaccaacaccgctac 82  Q
    ||||||| |||| || |||| || |||| |||||||||||||||||||| ||||||||||    
T  10171712 acacgacactgaaacttcgacaccgctagtgtaaaaaatataggacaccgacaccgctac 10171653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 35677772 - 35677813
Alignment:
Q  148 agaatcaaaatatatacatgtgcatttaaattgagcaattta 189  Q
    |||||||||||||||||||||| || |||| |||||||||||    
T  35677772 agaatcaaaatatatacatgtgtatctaaaatgagcaattta 35677813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 235
Target Start/End: Complemental strand, 16661361 - 16661256
Alignment:
Q  132 taaaagatctaaatcaagaatcaaaatatatacatgtgcatttaaattgagcaatttacttgttt--aaaaagttccaaaacaagattggatagtatttg 229  Q
    ||||||||||||||  ||||||| |||| ||||||||| || ||| |||||||||||| ||  ||  ||||||||| |||||||||| |||||||||||     
T  16661361 taaaagatctaaattgagaatcagaatacatacatgtgtatctaacttgagcaatttattttattaaaaaaagttctaaaacaagataggatagtattta 16661262  T
Q  230 accttt 235  Q
    ||||||    
T  16661261 accttt 16661256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 41848919 - 41848976
Alignment:
Q  24 cacgacgctgacacctcgagactgctaatgtaaaaaatataggacaccaacaccgcta 81  Q
    |||||| ||||||| |||| || ||||||||||||||||||||||||| |||||||||    
T  41848919 cacgacactgacacatcgacaccgctaatgtaaaaaatataggacaccgacaccgcta 41848976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 9929540 - 9929589
Alignment:
Q  33 gacacctcgagactgctaatgtaaaaaatataggacaccaacaccgctac 82  Q
    ||||| |||| || |||||||||||||||||||||||||||||| |||||    
T  9929540 gacacgtcgacaccgctaatgtaaaaaatataggacaccaacactgctac 9929589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 27003955 - 27003993
Alignment:
Q  44 actgctaatgtaaaaaatataggacaccaacaccgctac 82  Q
    |||| ||||||||||||||||||||||| ||||||||||    
T  27003955 actgttaatgtaaaaaatataggacaccgacaccgctac 27003993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 235
Target Start/End: Complemental strand, 4748246 - 4748159
Alignment:
Q  150 aatcaaaatatatacatgtgcatttaaattgagcaatttacttgttt--aaaaagttccaaaacaagattggatagtatttgaccttt 235  Q
    |||||||||| |||||||| | | ||| |||||||||||| ||  ||  ||||||||| |||||||| |  |||||||||||||||||    
T  4748246 aatcaaaatagatacatgtacttctaacttgagcaatttatttcattggaaaaagttctaaaacaagttacgatagtatttgaccttt 4748159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 4748312 - 4748264
Alignment:
Q  33 gacacctcgagactgctaatgtaaaaaatataggacaccaacaccgcta 81  Q
    ||||| |||| || ||||||||||||||||||||||||| |||| ||||    
T  4748312 gacacatcgacaccgctaatgtaaaaaatataggacaccgacactgcta 4748264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 32201076 - 32201032
Alignment:
Q  33 gacacctcgagactgctaatgtaaaaaatataggacaccaacacc 77  Q
    ||||| |||| || ||||||||||||||||||||||||| |||||    
T  32201076 gacacgtcgacaccgctaatgtaaaaaatataggacaccgacacc 32201032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 326
Target Start/End: Complemental strand, 25224239 - 25224057
Alignment:
Q  137 gatctaaatcaagaatcaaaatatatacatgtgcatttaaatt-gagcaatttacttgtttaaaaagttccaaaacaagattggatagtatttgaccttt 235  Q
    |||||||||||||||| | |||||||| |||||||  ||| || |||||||||| || ||||| |||||| ||||  | || |||||||||||| |||||    
T  25224239 gatctaaatcaagaataagaatatataaatgtgca--taatttagagcaatttatttctttaacaagttctaaaatcaaataggatagtatttgtccttt 25224142  T
Q  236 --tttatccgtctactaacaaaaaagattaaaatattgttaacaaaattaatgtctttaacccccatcattgatcaacattgcctccacacat 326  Q
      ||||||| ||||| |||| |    ||||||| |   |||||||| |||| |||||||| |||| |||||||||||||||||  ||||||||    
T  25224141 tctttatccatctaccaacaca----attaaaaca---ttaacaaatttaaagtctttaa-ccccttcattgatcaacattgctcccacacat 25224057  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 326
Target Start/End: Complemental strand, 25288395 - 25288213
Alignment:
Q  137 gatctaaatcaagaatcaaaatatatacatgtgcatttaaatt-gagcaatttacttgtttaaaaagttccaaaacaagattggatagtatttgaccttt 235  Q
    |||||||||||||||| | |||||||| |||||||  ||| || |||||||||| || ||||| |||||| ||||  | || |||||||||||| |||||    
T  25288395 gatctaaatcaagaataagaatatataaatgtgca--taatttagagcaatttatttctttaacaagttctaaaatcaaataggatagtatttgtccttt 25288298  T
Q  236 --tttatccgtctactaacaaaaaagattaaaatattgttaacaaaattaatgtctttaacccccatcattgatcaacattgcctccacacat 326  Q
      ||||||| ||||| |||| |    ||||||| |   |||||||| |||| |||||||| |||| |||||||||||||||||  ||||||||    
T  25288297 tctttatccatctaccaacaca----attaaaaca---ttaacaaatttaaagtctttaa-ccccttcattgatcaacattgctcccacacat 25288213  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 32676905 - 32676849
Alignment:
Q  15 gacacctaacacgacgctgacacctcgagactgctaatgtaaaaaatataggacacc 71  Q
    ||||||| ||||||| ||||||| |||| || |||||||||||||| ||||||||||    
T  32676905 gacacctgacacgacactgacacgtcgacaccgctaatgtaaaaaaaataggacacc 32676849  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 258
Target Start/End: Complemental strand, 18393735 - 18393606
Alignment:
Q  132 taaaagatctaaatcaagaatcaaaatatatacatgtgcatttaaattgagcaatttacttgtttaaaaa--gttccaaaacaagattggatagtatttg 229  Q
    ||||| ||||||||  ||||||| |||| |||||| ||||||||| |||| ||||||| ||  |||||||  |||  | ||||||||   ||||||||||    
T  18393735 taaaatatctaaattgagaatcataatacatacatatgcatttaacttgaacaatttattttattaaaaaaagttttataacaagataaaatagtatttg 18393636  T
Q  230 accttt-tttatccgtctactaacaaaaaa 258  Q
    |||||| ||||||| ||||||| |||||||    
T  18393635 acctttatttatccatctactatcaaaaaa 18393606  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 82
Target Start/End: Complemental strand, 15132206 - 15132171
Alignment:
Q  47 gctaatgtaaaaaatataggacaccaacaccgctac 82  Q
    |||||||||||| |||||||||||||||||||||||    
T  15132206 gctaatgtaaaatatataggacaccaacaccgctac 15132171  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 27401817 - 27401858
Alignment:
Q  148 agaatcaaaatatatacatgtgcatttaaattgagcaattta 189  Q
    ||||||||||||||||||| ||||| ||| ||||||||||||    
T  27401817 agaatcaaaatatatacatctgcatctaacttgagcaattta 27401858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 82
Target Start/End: Original strand, 37855085 - 37855118
Alignment:
Q  49 taatgtaaaaaatataggacaccaacaccgctac 82  Q
    ||||||||||||||||||||||| ||||||||||    
T  37855085 taatgtaaaaaatataggacaccgacaccgctac 37855118  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 132 - 189
Target Start/End: Original strand, 27993880 - 27993937
Alignment:
Q  132 taaaagatctaaatcaagaatcaaaatatatacatgtgcatttaaattgagcaattta 189  Q
    |||||||| ||||  ||||||||||||| |||||| ||||||||| ||||||||||||    
T  27993880 taaaagatataaactaagaatcaaaatacatacatatgcatttaacttgagcaattta 27993937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 43439027 - 43438954
Alignment:
Q  174 taaattgagcaatttacttgtttaaaaagttccaaaacaagattggatagtatttgaccttttttatccgtcta 247  Q
    |||||||||||||||  || | || ||||||  |||||| ||||||||||||||||||| ||||||||| ||||    
T  43439027 taaattgagcaatttcattctctataaagttttaaaacatgattggatagtatttgaccatttttatccatcta 43438954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 132 - 189
Target Start/End: Complemental strand, 43837374 - 43837317
Alignment:
Q  132 taaaagatctaaatcaagaatcaaaatatatacatgtgcatttaaattgagcaattta 189  Q
    ||||||||||||||  |||||||||||||||||| || ||  ||||||||||||||||    
T  43837374 taaaagatctaaattgagaatcaaaatatatacaagtccaaataaattgagcaattta 43837317  T

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Target: scaffold0325 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 12798 - 12836
Alignment:
Q  44 actgctaatgtaaaaaatataggacaccaacaccgctac 82  Q
    ||||||||||||||||||| |||||||| ||||||||||    
T  12798 actgctaatgtaaaaaatacaggacaccgacaccgctac 12836  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 56917 - 56966
Alignment:
Q  33 gacacctcgagactgctaatgtaaaaaatataggacaccaacaccgctac 82  Q
    ||||| |||| || |||||| ||||||||||||||||| |||||||||||    
T  56917 gacacatcgacaccgctaatataaaaaatataggacacgaacaccgctac 56966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 189
Target Start/End: Original strand, 6821004 - 6821061
Alignment:
Q  132 taaaagatctaaatcaagaatcaaaatatatacatgtgcatttaaattgagcaattta 189  Q
    ||||| ||||||||  ||||||||||||||||||| ||||| ||  ||||||||||||    
T  6821004 taaaaaatctaaatttagaatcaaaatatatacatatgcatctatcttgagcaattta 6821061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 34013446 - 34013491
Alignment:
Q  33 gacacctcgagactgctaatgtaaaaaatataggacaccaacaccg 78  Q
    ||||| |||| || ||||||||||||||||||||||||| ||||||    
T  34013446 gacacgtcgacaccgctaatgtaaaaaatataggacaccgacaccg 34013491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 19294295 - 19294343
Alignment:
Q  34 acacctcgagactgctaatgtaaaaaatataggacaccaacaccgctac 82  Q
    |||| |||| || ||||||||||||||||||||||||| | ||||||||    
T  19294295 acacatcgacaccgctaatgtaaaaaatataggacaccgataccgctac 19294343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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