View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21372_high_1_N (Length: 567)

Name: NF21372_high_1_N
Description: NF21372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21372_high_1_N
NF21372_high_1_N
[»] chr5 (6 HSPs)
chr5 (30-538)||(37704454-37704966)
chr5 (31-390)||(37698974-37699349)
chr5 (30-330)||(37437520-37437823)
chr5 (30-259)||(37698636-37698845)
chr5 (448-490)||(30384256-30384298)
chr5 (449-485)||(1630012-1630048)
[»] chr4 (2 HSPs)
chr4 (158-390)||(16840857-16841109)
chr4 (450-490)||(31095092-31095132)
[»] chr6 (2 HSPs)
chr6 (450-492)||(17411089-17411131)
chr6 (449-492)||(196244-196287)
[»] chr8 (1 HSPs)
chr8 (450-495)||(18080600-18080645)
[»] chr3 (1 HSPs)
chr3 (449-492)||(44291420-44291463)
[»] chr7 (2 HSPs)
chr7 (449-487)||(12422352-12422390)
chr7 (460-492)||(32857805-32857837)


Alignment Details
Target: chr5 (Bit Score: 407; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 30 - 538
Target Start/End: Original strand, 37704454 - 37704966
Alignment:
Q  30 accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacat 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704454 accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacat 37704553  T
Q  130 ttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagaccagactttttgaacgtaattagcac 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704554 ttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagaccagactttttgaacgtaattagcac 37704653  T
Q  230 gaaagttggaatcttatttcgagttgtgat--gatgtccatctcatt--ggtagcaatcacagtgagtaatgtgcttaaaaatacacctgaaatgaagaa 325  Q
    |||||||||||||||||||| |||||||||  |||  | |  |||||   ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704654 gaaagttggaatcttatttcaagttgtgataagataacaaattcatttaagtagcaatcacagtgagtaatgtgcttaaaaatacacctgaaatgaagaa 37704753  T
Q  326 aataacattaattgtatttagaatcggagacttagacttcttcaaatgtacatactttaaagagcaaattacgatacttttaagttatttaattataaca 425  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  37704754 aataacattaattgtatttagaatcggagacttagacttcttcaaatgtacatactttaaagagcaaattacgagacttttaagttatttaattataaca 37704853  T
Q  426 aatcggnnnnnnnnnnnnnnnncgtatcacttacgtcatttaagttatttaattataacaagttagttatgtagttgctcaaaaaacaagttagttatgt 525  Q
    ||||||                |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704854 aatcggttttttaagattttttcgtatcacttgcgtcatttaagttatttaattataacaagttagttatgtagttgctcaaaaaacaagttagttatgt 37704953  T
Q  526 aagtatttttcgt 538  Q
    |||||||||||||    
T  37704954 aagtatttttcgt 37704966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 31 - 390
Target Start/End: Original strand, 37698974 - 37699349
Alignment:
Q  31 ccaaaaaggttgacttattagattgtttgcaaa--ttgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgaca 128  Q
    |||||||| |||| |||||||||||||| ||||  ||||||||| ||||||||||||||||| ||||||||||||||||||| | |||||||||||||||    
T  37698974 ccaaaaagtttgagttattagattgtttacaaacattgagtctaggtattcccttattttgtgttgggggtgcttttcataaccgtatactgatatgaca 37699073  T
Q  129 tttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaattagc 227  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||| ||| |||||||| |||||||||||||    
T  37699074 tttggcaacaatattaattcagtaacaatcatagaaaagtttggtgttcattaaactaaataacatcttggaaaaccaagacttttcgaacgtaattagc 37699173  T
Q  228 acgaaagttggaatcttatttcgagttgtgat-----gatgtccatctcatt--ggtagcaatcacagtgagtaatgtgcttaaaaatacacctgaaatg 320  Q
    || ||||||||||||||||| | |||||||||     |||  | |  |||||   |||||||||| | |||||||| ||||||||||||||||| |||||    
T  37699174 actaaagttggaatcttattgcaagttgtgataataagataacaaattcatttaagtagcaatcagaatgagtaatttgcttaaaaatacacctaaaatg 37699273  T
Q  321 aagaaaat------aacattaattgtatttagaatcggagacttagacttcttcaaatgtacatactttaaagagc 390  Q
    ||||||||      |||||||||||||||||| | ||||||||||||||||||||| || ||| ||||||||||||    
T  37699274 aagaaaataataacaacattaattgtatttagcaacggagacttagacttcttcaactgaacagactttaaagagc 37699349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 30 - 330
Target Start/End: Original strand, 37437520 - 37437823
Alignment:
Q  30 accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacat 129  Q
    |||||||||  |||||||||||||||||| |||||| ||||||  ||||||||| ||||  | ||||| |||||||||||| | |||| ||||||||||     
T  37437520 accaaaaagtctgacttattagattgtttacaaattcagtctagctattcccttgttttaatgtgggg-tgcttttcataaccgtatagtgatatgacaa 37437618  T
Q  130 ttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaattagca 228  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| || || ||||||| |||||||| |||||||||||||     
T  37437619 ttggcaacaatattaattcaataacaatcatagaaaagtttggtgttcattaaactaaataacatattggaagaccaagacttttcgaacgtaattagc- 37437717  T
Q  229 cgaaagttggaatcttatttcgagttgtgat-----gatgtccatctcatt--ggtagcaatcacagtgagtaatgtgcttaaaaatacacctgaaatga 321  Q
       |||||||||||||||| | |||||||||     |||  | |  |||||   |||||||||| | |||||||| ||||||||||||||||||||||||    
T  37437718 ---aagttggaatcttattgcaagttgtgataataagataacaaattcatttaagtagcaatcagaatgagtaatttgcttaaaaatacacctgaaatga 37437814  T
Q  322 agaaaataa 330  Q
    |||||||||    
T  37437815 agaaaataa 37437823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 30 - 259
Target Start/End: Original strand, 37698636 - 37698845
Alignment:
Q  30 accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacat 129  Q
    ||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||                  | | |||| ||||||||||     
T  37698636 accaaaaagtttgacttattagattgtttacaaattgagtctaagtattcccttattttgttg-----------------accgtatagtgatatgacaa 37698718  T
Q  130 ttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacg----taatt 224  Q
    ||||||||||||||||        | |||||| ||||||||||||||| ||||||||||||| ||||| ||||||| ||||||||| ||||    |||||    
T  37698719 ttggcaacaatattaa--------caatcatacaaaagtttggtgttcgttaaactaaataacatcttggaagaccaagacttttttaacgtaattaatt 37698810  T
Q  225 agcacgaaagttggaatcttatttcgagttgtgat 259  Q
    ||||| ||||||||||||||||| | |||||||||    
T  37698811 agcactaaagttggaatcttattgcaagttgtgat 37698845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 448 - 490
Target Start/End: Original strand, 30384256 - 30384298
Alignment:
Q  448 cgtatcacttacgtcatttaagttatttaattataacaagtta 490  Q
    ||||| ||||||||| |||||||||||||||| ||||||||||    
T  30384256 cgtattacttacgtcttttaagttatttaattgtaacaagtta 30384298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 449 - 485
Target Start/End: Complemental strand, 1630048 - 1630012
Alignment:
Q  449 gtatcacttacgtcatttaagttatttaattataaca 485  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  1630048 gtatcacttacgtcttttaagttatttaatcataaca 1630012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 158 - 390
Target Start/End: Complemental strand, 16841109 - 16840857
Alignment:
Q  158 catagaaaagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaattagcacgaaagttggaatcttatttcgagttgt 256  Q
    |||| |||||||||||||| | |||||||||||| ||||| ||||||| ||||||||||||||||||||||||  |||||||||||||||| | ||||||    
T  16841109 catacaaaagtttggtgtttaataaactaaataaaatcttggaagaccaagactttttgaacgtaattagcac-taagttggaatcttattgcaagttgt 16841011  T
Q  257 gat--------gatgtccatctcatt--ggtagcaatcacagtgagtaatgtgcttaaaa----atacacctgaaatgaagaaaat------aacattaa 336  Q
    |||        |||  | |  |||||   ||| |||||||| ||| |||| |||||||||    ||||||||||||||||||||||      ||||||||    
T  16841010 gatattaataagataacaaattcatttaagtaccaatcacaatgaataatttgcttaaaaatatatacacctgaaatgaagaaaataataacaacattaa 16840911  T
Q  337 ttgtatttagaatcggagacttagacttcttcaaatgtacatactttaaagagc 390  Q
     ||||||||||| |||||||||||||||| |||| | | |||||||||||||||    
T  16840910 atgtatttagaagcggagacttagacttcgtcaactatccatactttaaagagc 16840857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 450 - 490
Target Start/End: Original strand, 31095092 - 31095132
Alignment:
Q  450 tatcacttacgtcatttaagttatttaattataacaagtta 490  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  31095092 tatcacttacgtcctttaagttatttaattataacaagtta 31095132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 450 - 492
Target Start/End: Original strand, 17411089 - 17411131
Alignment:
Q  450 tatcacttacgtcatttaagttatttaattataacaagttagt 492  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  17411089 tatcacttacgtcatttaagttatttaattgtaacaagttagt 17411131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 449 - 492
Target Start/End: Complemental strand, 196287 - 196244
Alignment:
Q  449 gtatcacttacgtcatttaagttatttaattataacaagttagt 492  Q
    ||||||||||||||||||||||||||||||| ||| || |||||    
T  196287 gtatcacttacgtcatttaagttatttaattgtaataatttagt 196244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 450 - 495
Target Start/End: Original strand, 18080600 - 18080645
Alignment:
Q  450 tatcacttacgtcatttaagttatttaattataacaagttagttat 495  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||    
T  18080600 tatcacttacgtcatttaagttatttaattgtaataagttagttat 18080645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 449 - 492
Target Start/End: Complemental strand, 44291463 - 44291420
Alignment:
Q  449 gtatcacttacgtcatttaagttatttaattataacaagttagt 492  Q
    |||||||||| ||| |||||||||||||||| ||||||||||||    
T  44291463 gtatcacttatgtcctttaagttatttaattgtaacaagttagt 44291420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 449 - 487
Target Start/End: Complemental strand, 12422390 - 12422352
Alignment:
Q  449 gtatcacttacgtcatttaagttatttaattataacaag 487  Q
    |||||||||||||| |||||||||||||||| |||||||    
T  12422390 gtatcacttacgtcttttaagttatttaattttaacaag 12422352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 460 - 492
Target Start/End: Original strand, 32857805 - 32857837
Alignment:
Q  460 gtcatttaagttatttaattataacaagttagt 492  Q
    |||||||||||||||||||| ||||||||||||    
T  32857805 gtcatttaagttatttaattgtaacaagttagt 32857837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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