View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21372_high_20 (Length: 324)

Name: NF21372_high_20
Description: NF21372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21372_high_20
NF21372_high_20
[»] chr7 (6 HSPs)
chr7 (25-324)||(18395925-18396233)
chr7 (79-138)||(27073633-27073692)
chr7 (79-138)||(27204621-27204680)
chr7 (27-132)||(40808414-40808521)
chr7 (42-91)||(23565313-23565363)
chr7 (45-125)||(36146678-36146759)
[»] chr8 (8 HSPs)
chr8 (27-146)||(11712240-11712361)
chr8 (44-125)||(32902442-32902524)
chr8 (44-122)||(29796578-29796656)
chr8 (96-177)||(7597380-7597462)
chr8 (96-146)||(8153572-8153622)
chr8 (69-122)||(3232092-3232145)
chr8 (69-146)||(8863333-8863409)
chr8 (70-118)||(18141659-18141706)
[»] chr2 (4 HSPs)
chr2 (27-146)||(4560904-4561025)
chr2 (69-113)||(28671797-28671841)
chr2 (44-118)||(36773387-36773462)
chr2 (31-114)||(11067134-11067219)
[»] chr4 (7 HSPs)
chr4 (27-184)||(21704065-21704225)
chr4 (69-184)||(3739397-3739511)
chr4 (31-118)||(6677306-6677394)
chr4 (44-125)||(36463657-36463738)
chr4 (79-122)||(4587792-4587835)
chr4 (91-124)||(43208174-43208207)
chr4 (27-113)||(37755162-37755250)
[»] scaffold0129 (1 HSPs)
scaffold0129 (45-125)||(19854-19933)
[»] chr1 (4 HSPs)
chr1 (44-118)||(8871315-8871390)
chr1 (74-130)||(2263271-2263327)
chr1 (44-120)||(28265821-28265898)
chr1 (96-144)||(25116407-25116455)
[»] chr5 (1 HSPs)
chr5 (69-143)||(5611451-5611524)
[»] chr3 (5 HSPs)
chr3 (69-143)||(21156738-21156811)
chr3 (69-122)||(40519479-40519532)
chr3 (69-122)||(2075350-2075403)
chr3 (74-118)||(9666754-9666797)
chr3 (69-125)||(37761765-37761820)


Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-141; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 25 - 324
Target Start/End: Complemental strand, 18396233 - 18395925
Alignment:
Q  25 catcaccaaagacattcaacctaaagttacctccttgatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataat 124  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  18396233 catcaccaaagacattcaacctaaagttacctccttgatatccaaagtttctctctcttgaagctctacttaaaacatgaagaatgaagtcttatataat 18396134  T
Q  125 gcacaagtcccgagaaaatcgtatcacaattttcactaattgtgccacgatttcaagttacttaaaatcgttccacgattttcctctttcgtgccacaat 224  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18396133 gcacaagttccgagaaaatcgtatcacaattttcactaattgtgccacgatttcaagttacttaaaatcgttccacgattttcctctttcgtgccacaat 18396034  T
Q  225 ttttcgaatcaaa---------accttaaccaaaatcgcgtcacgatttttgcaaatcacggcccaatttttgtcgatattttagacaaatttcaacatt 315  Q
    |||||||||||||         ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  18396033 ttttcgaatcaaaacctccaaaaccttaaccaaaatctcgtcacgatttttgcaaatcgcggcccaatttttgtcgattttttagacaaatttcaacatt 18395934  T
Q  316 tgttttcct 324  Q
    |||||||||    
T  18395933 tgttttcct 18395925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 138
Target Start/End: Complemental strand, 27073692 - 27073633
Alignment:
Q  79 ctcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaagtcccgag 138  Q
    |||||||||  |||| |||||| |||||||||||||||||||||||||| ||| ||||||    
T  27073692 ctcttgaagtcctacctaaaacttgaagaatgaagtcttatataatgcaaaagccccgag 27073633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 138
Target Start/End: Original strand, 27204621 - 27204680
Alignment:
Q  79 ctcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaagtcccgag 138  Q
    |||||||||  |||| |||||| |||||||||||||||||||||||||| ||| ||||||    
T  27204621 ctcttgaagtcctacctaaaacttgaagaatgaagtcttatataatgcaaaagccccgag 27204680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 132
Target Start/End: Complemental strand, 40808521 - 40808414
Alignment:
Q  27 tcaccaaagacattcaacc-taaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataat 124  Q
    |||||||||||| |||||| ||||||||||||||| ||| | | |||||| || ||||| |||  ||||||| |||||||||||||||||  ||||||      
T  40808521 tcaccaaagacactcaaccctaaagttacctcctttgattctctaagtttatctctctttaagtcctacttataacatgaagaatgaagttctatataga 40808422  T
Q  125 gcacaagt 132  Q
    ||||||||    
T  40808421 gcacaagt 40808414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 23565313 - 23565363
Alignment:
Q  42 aacctaaagttacctcctt-gatacccaaagtttctcactcttgaagctct 91  Q
    ||||||||||||||||||| |||| || ||||||||| |||||||||||||    
T  23565313 aacctaaagttacctcctttgatatcccaagtttctctctcttgaagctct 23565363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 125
Target Start/End: Original strand, 36146678 - 36146759
Alignment:
Q  45 ctaaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatg 125  Q
    |||||||||||||||| |||  || |||||| || ||||||||||||| |  |||| ||||||||||||| |||| ||||||    
T  36146678 ctaaagttacctcctttgatttcccaagtttttctctcttgaagctcttcccaaaaaatgaagaatgaagccttaaataatg 36146759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 9e-27; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 27 - 146
Target Start/End: Original strand, 11712240 - 11712361
Alignment:
Q  27 tcaccaaagacattcaacc-taaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataat 124  Q
    |||||||||||| |||||| |||||||||||| || ||||||| ||||||||| ||||||||||||||| |||||||| |||||||||  |||||||| |    
T  11712240 tcaccaaagacactcaaccctaaagttacctcatttgataccctaagtttctctctcttgaagctctacctaaaacataaagaatgaaaccttatatagt 11712339  T
Q  125 gcacaagtcccgagaaaatcgt 146  Q
    ||||| ||||| ||||||||||    
T  11712340 gcacatgtcccaagaaaatcgt 11712361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 32902442 - 32902524
Alignment:
Q  44 cctaaagttacctcct-tgatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatg 125  Q
    |||||||||||||| | ||||  || ||||||||| |||||||||| || || ||||||||||||||||||||||||| ||||    
T  32902442 cctaaagttacctcatctgatttcccaagtttctctctcttgaagccctcctcaaaacatgaagaatgaagtcttatacaatg 32902524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 122
Target Start/End: Original strand, 29796578 - 29796656
Alignment:
Q  44 cctaaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatata 122  Q
    ||||||||||||||||| |||  |  ||||||||| ||||||||| ||| || |||||||||||||||||| ||||||||    
T  29796578 cctaaagttacctcctttgatttctcaagtttctctctcttgaag-tctcctcaaaacatgaagaatgaagccttatata 29796656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 177
Target Start/End: Complemental strand, 7597462 - 7597380
Alignment:
Q  96 aaaacatgaagaatgaagtcttatataatgcacaagtcccgagaaaa-tcgtatcacaattttcactaattgtgccacgattt 177  Q
    |||||||||||||||||| |||||||| ||| ||| || |||||||| | ||  | | |||||||| ||||||||||||||||    
T  7597462 aaaacatgaagaatgaagccttatatagtgctcaaatctcgagaaaaattgtgccccgattttcaccaattgtgccacgattt 7597380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 146
Target Start/End: Complemental strand, 8153622 - 8153572
Alignment:
Q  96 aaaacatgaagaatgaagtcttatataatgcacaagtcccgagaaaatcgt 146  Q
    |||||||||||||||||| ||| ||||||| |||||  |||||||||||||    
T  8153622 aaaacatgaagaatgaagccttttataatgtacaagatccgagaaaatcgt 8153572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 3232092 - 3232145
Alignment:
Q  69 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatata 122  Q
    ||||||||  ||||| | |||||||| |||||||||||||||||| ||||||||    
T  3232092 aagtttctttctcttaatgctctactcaaaacatgaagaatgaagccttatata 3232145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 8863409 - 8863333
Alignment:
Q  69 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaagtcccgagaaaatcgt 146  Q
    |||||| || |||||||||||| ||  |||||||||||||||||| |||||||| |||||| |  | |||||||||||    
T  8863409 aagtttttctctcttgaagctc-acccaaaacatgaagaatgaagccttatatagtgcacatgatctgagaaaatcgt 8863333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 18141706 - 18141659
Alignment:
Q  70 agtttctcactcttgaagctctacttaaaacatgaagaatgaagtctta 118  Q
    |||||||| |||||||||||||||| |||| ||||||||||||| ||||    
T  18141706 agtttctctctcttgaagctctactcaaaa-atgaagaatgaagcctta 18141659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 27 - 146
Target Start/End: Complemental strand, 4561025 - 4560904
Alignment:
Q  27 tcaccaaagacattcaac-ctaaagttacctcct-tgatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataat 124  Q
    |||||||||||| ||||| ||||||||| ||||| ||||  || |||||| || ||||||||| | | || ||||||||||||||||||||||||| |||    
T  4561025 tcaccaaagacactcaactctaaagttatctcctctgatttcctaagtttttctctcttgaagttattctaaaaacatgaagaatgaagtcttatacaat 4560926  T
Q  125 gcacaagtcccgagaaaatcgt 146  Q
    ||||||||||||||||||||||    
T  4560925 gcacaagtcccgagaaaatcgt 4560904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 28671841 - 28671797
Alignment:
Q  69 aagtttctcactcttgaagctctacttaaaacatgaagaatgaag 113  Q
    ||||||||| |||||||||| ||||| ||||||||||||||||||    
T  28671841 aagtttctctctcttgaagccctactcaaaacatgaagaatgaag 28671797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 118
Target Start/End: Complemental strand, 36773462 - 36773387
Alignment:
Q  44 cctaaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtctta 118  Q
    ||||||||||||||||| |||  ||  |||||||| ||||||||||||||   |||| ||||||||||||||||||    
T  36773462 cctaaagttacctcctttgatttccctagtttctctctcttgaagctctatacaaaaaatgaagaatgaagtctta 36773387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 114
Target Start/End: Complemental strand, 11067219 - 11067134
Alignment:
Q  31 caaagacattcaacc-taaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagt 114  Q
    |||||||| |||||| ||||||||||||||| |||  ||  |||||||| |||||||||| || || |||| ||||||||||||||    
T  11067219 caaagacaatcaaccataaagttacctcctttgatttccctagtttctctctcttgaagccctcctcaaaaaatgaagaatgaagt 11067134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 184
Target Start/End: Original strand, 21704065 - 21704225
Alignment:
Q  27 tcaccaaagacattcaacct-aaagttacctcctt-gatacccaaagtttctcactcttgaagc-tctacttaaaacatgaagaatgaagtcttatataa 123  Q
    ||||||||||| |||||||| ||||||||||| || |||  |  ||||||||| |||||||||| |||||  |||||||||| |||||||||||| |||     
T  21704065 tcaccaaagactttcaaccttaaagttacctcatttgatttctcaagtttctctctcttgaagcctctacacaaaacatgaaaaatgaagtcttaaatag 21704164  T
Q  124 tgcacaagtcccgagaaaatcgtatcacaattttcactaattgtgccacgatttcaagtta 184  Q
    |||||| |||| |  ||||||||  | |||||||  ||||| |||||||||||||| ||||    
T  21704165 tgcacatgtcctgtcaaaatcgtgccccaattttacctaatcgtgccacgatttcacgtta 21704225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 184
Target Start/End: Original strand, 3739397 - 3739511
Alignment:
Q  69 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaagtcccgagaaaatcgtatcacaattttcactaattgtg 168  Q
    ||||||||| ||||||||  | |||| ||||||||||||||||||||||| |||||||||| ||||||  ||||||||  | | |||| |||  ||| ||    
T  3739397 aagtttctctctcttgaaa-tgtactcaaaacatgaagaatgaagtcttaaataatgcacatgtcccgtcaaaatcgtgcctcgatttacacacattttg 3739495  T
Q  169 ccacgatttcaagtta 184  Q
    ||||||||||| ||||    
T  3739496 ccacgatttcacgtta 3739511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 118
Target Start/End: Complemental strand, 6677394 - 6677306
Alignment:
Q  31 caaagacattcaacc-taaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtctta 118  Q
    |||||||| |||||| ||||||||||||||| ||||||| || ||||||  ||||||||| ||||| |||||||||||||||||| ||||    
T  6677394 caaagacactcaaccctaaagttacctcctttgataccctaaatttctctttcttgaagc-ctactcaaaacatgaagaatgaagcctta 6677306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 36463657 - 36463738
Alignment:
Q  44 cctaaagttacctcct-tgatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatg 125  Q
    |||||||||||||||| ||||  || |||||| || |||||||||||||||| |||| ||||||||||||| |||| ||||||    
T  36463657 cctaaagttacctcctatgatttcccaagtttttctctcttgaagctctactcaaaa-atgaagaatgaagccttaaataatg 36463738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 79 - 122
Target Start/End: Complemental strand, 4587835 - 4587792
Alignment:
Q  79 ctcttgaagctctacttaaaacatgaagaatgaagtcttatata 122  Q
    ||||||||||||| || |||||||||||||||||||||| ||||    
T  4587835 ctcttgaagctctcctcaaaacatgaagaatgaagtcttttata 4587792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 124
Target Start/End: Original strand, 43208174 - 43208207
Alignment:
Q  91 tacttaaaacatgaagaatgaagtcttatataat 124  Q
    |||| |||||||||||||||||||||||||||||    
T  43208174 tactcaaaacatgaagaatgaagtcttatataat 43208207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 37755162 - 37755250
Alignment:
Q  27 tcaccaaagacattcaa-cctaaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaag 113  Q
    |||||||||||  |||| ||||||||||||||||| |||   | ||||||||| |||||||| |||  || ||||||||||||||||||    
T  37755162 tcaccaaagactctcaatcctaaagttacctcctttgattttccaagtttctctctcttgaaactcatctcaaaacatgaagaatgaag 37755250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 45 - 125
Target Start/End: Original strand, 19854 - 19933
Alignment:
Q  45 ctaaagttacctccttgatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatg 125  Q
    |||||||||||||||||||  || ||||||| | |||||||||| ||||| |||||| ||||||||||||| |||||||||    
T  19854 ctaaagttacctccttgatttcccaagtttcactctcttgaagc-ctactcaaaacaagaagaatgaagtcatatataatg 19933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 118
Target Start/End: Original strand, 8871315 - 8871390
Alignment:
Q  44 cctaaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtctta 118  Q
    ||||||||||||| ||| |||| ||  |||||||| |||||||||||||||  |||||||||||||||||| ||||    
T  8871315 cctaaagttacctgctttgatatccctagtttctctctcttgaagctctaccaaaaacatgaagaatgaagcctta 8871390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 2263271 - 2263327
Alignment:
Q  74 tctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaa 130  Q
    |||| ||||||| |||||||  |||||||||||||||||| |||||||| |||||||    
T  2263271 tctctctcttgacgctctacacaaaacatgaagaatgaagccttatatagtgcacaa 2263327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 120
Target Start/End: Original strand, 28265821 - 28265898
Alignment:
Q  44 cctaaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttata 120  Q
    ||||||||||||||||| |||  ||  |||||||| ||||||||||||| |  |||| ||||||||||||| ||||||    
T  28265821 cctaaagttacctcctttgatttccctagtttctctctcttgaagctcttcccaaaaaatgaagaatgaagccttata 28265898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 25116455 - 25116407
Alignment:
Q  96 aaaacatgaagaatgaagtcttatataatgcacaagtcccgagaaaatc 144  Q
    |||||||||||||||||| |||||||| |||||| | || |||||||||    
T  25116455 aaaacatgaagaatgaagacttatatagtgcacatgacctgagaaaatc 25116407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 143
Target Start/End: Original strand, 5611451 - 5611524
Alignment:
Q  69 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaagtcccgagaaaat 143  Q
    ||||||||| |||||||||||||  | ||||||||||||||||||||||| || ||| ||||| | |||||||||    
T  5611451 aagtttctctctcttgaagctctt-tcaaaacatgaagaatgaagtcttaaattatgtacaagactcgagaaaat 5611524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 143
Target Start/End: Original strand, 21156738 - 21156811
Alignment:
Q  69 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaagtcccgagaaaat 143  Q
    ||||||||| |||||||||||||  | ||||||||||||||||||||||| || ||| ||||| | |||||||||    
T  21156738 aagtttctctctcttgaagctctt-tcaaaacatgaagaatgaagtcttaaattatgtacaagactcgagaaaat 21156811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 40519479 - 40519532
Alignment:
Q  69 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatata 122  Q
    ||||||||| |||||||||||||||| || |||||| |||||||| ||||||||    
T  40519479 aagtttctctctcttgaagctctactcaatacatgatgaatgaagccttatata 40519532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 2075350 - 2075403
Alignment:
Q  69 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatata 122  Q
    ||||||||| ||||||||||   ||| |||||||||||||||||| ||||||||    
T  2075350 aagtttctctctcttgaagcctcactcaaaacatgaagaatgaagccttatata 2075403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 9666754 - 9666797
Alignment:
Q  74 tctcactcttgaagctctacttaaaacatgaagaatgaagtctta 118  Q
    |||| |||||||||||||||| |||| ||||||||||||||||||    
T  9666754 tctctctcttgaagctctactcaaaa-atgaagaatgaagtctta 9666797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 37761765 - 37761820
Alignment:
Q  69 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatg 125  Q
    ||||| ||| |||||||||| | ||| |||||||||||||| |||||||||||||||    
T  37761765 aagttactctctcttgaagc-caactaaaaacatgaagaataaagtcttatataatg 37761820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University