View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21372_high_29 (Length: 307)

Name: NF21372_high_29
Description: NF21372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21372_high_29
NF21372_high_29
[»] chr3 (1 HSPs)
chr3 (4-298)||(34899685-34899975)


Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 4 - 298
Target Start/End: Complemental strand, 34899975 - 34899685
Alignment:
Q  4 atctcaacttgaaagttgaaactaccaaactttacctatatgcatataaacacatctctctttagttcttctctcgctatttgatgtcaacaaaagctaa 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34899975 atctcaacttgaaagttgaaactaccaaactttacctatatgcatataaacacatctctctttagttcttctctcgctatttgatgtcaacaaaagctaa 34899876  T
Q  104 attgtgtcttcccctgcgtgtatgcaaccttatagtctcaaaattttccttccattctcaccaaacatgaaaggtatgtatcctccaactacaaaatttt 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  34899875 attgtgtcttcccctgcgtgtatgcaaccttatagtctcaaaattttccttccattctcaccaaacatgaaaggtatgtatcttccaactacaaaatttt 34899776  T
Q  204 atgtgaatttgtgcagatgatatcactgactgtatgatagatttgggtatctcgttggcctatcttattataacatttgcatatgcttctgtggt 298  Q
    ||||||||||||||||||||||||||||||  ||||||| |||| ||||||||  | ||||||||||||||||||||||||||||||| ||||||    
T  34899775 atgtgaatttgtgcagatgatatcactgacaatatgata-attt-ggtatctc--ttgcctatcttattataacatttgcatatgcttgtgtggt 34899685  T

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