View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21372_high_3 (Length: 423)
Name: NF21372_high_3
Description: NF21372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21372_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 86 - 404
Target Start/End: Original strand, 20670549 - 20670867
Alignment:
| Q |
86 |
tccaccattggcaatgcaagaaatgaacaacattcttgatgcactaataggatcaggagacacaagcgtaaacaaatgggtaagcatcttatcaatctca |
185 |
Q |
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| T |
20670549 |
tccaccattggcaatgcaagaaatgaacaacattcttgatgcactaataggatcaggagacacaagcataaacaaatgggtaagcatcttatcaatctcc |
20670648 |
T |
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| Q |
186 |
catccatcacttagcctaacactcttcatccctcaacaacccttaccatcttcctctacattaaaccccttcacttttccatatcatatcatccctcaac |
285 |
Q |
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| T |
20670649 |
catccatcacttagcctaacactcttcattcctcaacaacccttaccatcttcctctacattaaaccccttcacttttccatatcatatcatccctcaac |
20670748 |
T |
|
| Q |
286 |
gtctcgtctacactgacctcctcctcctccctcgttactctcgtatacctactcttctccccggtaaaaccatcaccgttaccgataacttccccggtaa |
385 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20670749 |
gtctcgtctacgctgacctcctcctcctccctcgttactctcgtatccctactcttctccccggtaaaaccatcaccgttaccgataacttccccggtaa |
20670848 |
T |
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| Q |
386 |
tttcacccttgatgatgtc |
404 |
Q |
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||||||||||||||||||| |
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| T |
20670849 |
tttcacccttgatgatgtc |
20670867 |
T |
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