View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21372_high_9 (Length: 361)
Name: NF21372_high_9
Description: NF21372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21372_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 4e-72; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 7 - 173
Target Start/End: Original strand, 28916607 - 28916773
Alignment:
| Q |
7 |
gcatcacagattaccatcttctttttgttggggtcaaaaagctggnnnnnnnggcagtacttatggatgatcgaagcaacatcaatttcggaaaaagctt |
106 |
Q |
| |
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||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28916607 |
gcatcgcagattaccatcttctttttcttggggtcaaaaagctggtttttttggcagtacttatggatgatcgaagcaacatcaatttcggaaaaagctt |
28916706 |
T |
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| Q |
107 |
tggtcgtgtcttcaccaatatttttaagaaaatctatgagacttcttgaaccccatccaacaaaatc |
173 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28916707 |
tggtcgtgtcttcaccaatatttttaagaaaatctatgagacttcttgaaccccatccaacaaaatc |
28916773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 7 - 173
Target Start/End: Original strand, 28892241 - 28892407
Alignment:
| Q |
7 |
gcatcacagattaccatcttctttttgttggggtcaaaaagctggnnnnnnnggcagtacttatggatgatcgaagcaacatcaatttcggaaaaagctt |
106 |
Q |
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||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
28892241 |
gcatcacagattaccttcttctttttcttggggtcaaaaagctggtttttgtggcagtacttactgatgattgaagcaacatcaatttcggaaaaagctt |
28892340 |
T |
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| Q |
107 |
tggtcgtgtcttcaccaatatttttaagaaaatctatgagacttcttgaaccccatccaacaaaatc |
173 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
28892341 |
tggtcgtgtcttcaccaatatttttaagaaaatctacgagacttcttgaaccccatccaacaaaatc |
28892407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 236 - 361
Target Start/End: Original strand, 28916836 - 28916958
Alignment:
| Q |
236 |
ctggtttaactcttgacgtgccaaccaagtcgtcagaatcagaacctataaagtcacttgcatcagattcaccggtatcatcttccccctcacctctttc |
335 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
28916836 |
ctggtttaactcttgacgtgccaaccaagtcgtcagaatcagaacctataaagtcacttgcatcagattcaccggt---atcttccccctcacctctttc |
28916932 |
T |
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| Q |
336 |
atacggttccaagtcaagcttgatgt |
361 |
Q |
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|||||||||||||||| ||||||||| |
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| T |
28916933 |
atacggttccaagtcacgcttgatgt |
28916958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 7 - 173
Target Start/End: Original strand, 28925836 - 28925999
Alignment:
| Q |
7 |
gcatcacagattaccatcttctttttgttggggtcaaaaagctggnnnnnnnggcagtacttatggatgatcgaagcaacatcaatttcggaaaaagctt |
106 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||| ||||||| | || || |||||||||||| ||||||||||||||||||| |
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| T |
28925836 |
gcatcacagatta---tcttctttttcttggggtcaaaaagctggtgtttgtggcagtaatcattgacgatcgaagcaacttcaatttcggaaaaagctt |
28925932 |
T |
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| Q |
107 |
tggtcgtgtcttcaccaatatttttaagaaaatctatgagacttcttgaaccccatccaacaaaatc |
173 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
28925933 |
tggtcgtgtctctaccaatatttttaagaaaatctatgagacttcttgaaccccatcctacaaaatc |
28925999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 7 - 173
Target Start/End: Original strand, 28902195 - 28902361
Alignment:
| Q |
7 |
gcatcacagattaccatcttctttttgttggggtcaaaaagctggnnnnnnnggcagtacttatggatgatcgaagcaacatcaatttcggaaaaagctt |
106 |
Q |
| |
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|||||||| ||||| ||||||||||| |||||||||||||||||| ||||||||| ||||||| |||||||||||| ||| || || |||| |
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| T |
28902195 |
gcatcacaaattacgatcttctttttcttggggtcaaaaagctggtttgtgtggcagtactggatgatgatccaagcaacatcaagttcagacaacgctt |
28902294 |
T |
|
| Q |
107 |
tggtcgtgtcttcaccaatatttttaagaaaatctatgagacttcttgaaccccatccaacaaaatc |
173 |
Q |
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||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28902295 |
cagtcgtgtctctaccaatacttttaagaaaatctatgagacttcttgaaccccatccaacaaaatc |
28902361 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 240 - 330
Target Start/End: Original strand, 28902437 - 28902527
Alignment:
| Q |
240 |
tttaactcttgacgtgccaaccaagtcgtcagaatcagaacctataaagtcacttgcatcagattcaccggtatcatcttccccctcacct |
330 |
Q |
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||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||| |
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| T |
28902437 |
tttaactcttgacgtgccaaccaagtcatcacaatcagaacctataaagtcactcgcatcagattcaccagtatcgtcttccccctcacct |
28902527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 240 - 357
Target Start/End: Original strand, 28926072 - 28926189
Alignment:
| Q |
240 |
tttaactcttgacgtgccaaccaagtcgtcagaatcagaacctataaagtcacttgcatcagattcaccggtatcatcttccccctcacctctttcatac |
339 |
Q |
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||||||||||||||| || | ||||||||| ||||||| |||||||||| || ||||||| ||||| ||||||||||||||||||||| |||||||| |
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| T |
28926072 |
tttaactcttgacgtttcatcgaagtcgtcacaatcagatcctataaagttgctcacatcagaatcaccagtatcatcttccccctcacctatttcatac |
28926171 |
T |
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| Q |
340 |
ggttccaagtcaagcttg |
357 |
Q |
| |
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|| ||||||||| ||||| |
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| T |
28926172 |
ggatccaagtcacgcttg |
28926189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 76 - 170
Target Start/End: Original strand, 28935507 - 28935601
Alignment:
| Q |
76 |
atcgaagcaacatcaatttcggaaaaagctttggtcgtgtcttcaccaatatttttaagaaaatctatgagacttcttgaaccccatccaacaaa |
170 |
Q |
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|
||||||||||||||| ||| | ||| ||||| | ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
28935507 |
atcgaagcaacatcatgttccgtaaatgcttttgccgtgtctctaccaatatctttaagaaaatctatgagacttcttgaaccccatccaacaaa |
28935601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 272 - 338
Target Start/End: Original strand, 28892515 - 28892581
Alignment:
| Q |
272 |
aatcagaacctataaagtcacttgcatcagattcaccggtatcatcttccccctcacctctttcata |
338 |
Q |
| |
|
|||||||| |||| |||| ||| ||||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
28892515 |
aatcagaatctatgaagttactgacatcagactcaccggtatcatcttccccctcacctatttcata |
28892581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 320
Target Start/End: Original strand, 28935692 - 28935748
Alignment:
| Q |
264 |
gtcgtcagaatcagaacctataaagtcacttgcatcagattcaccggtatcatcttc |
320 |
Q |
| |
|
||||||| |||||||||||||||||| ||| ||||||| ||||| | ||||||||| |
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| T |
28935692 |
gtcgtcacaatcagaacctataaagtaactcacatcagagtcaccagcatcatcttc |
28935748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 281 - 351
Target Start/End: Original strand, 34009511 - 34009581
Alignment:
| Q |
281 |
ctataaagtcacttgcatcagattcaccggtatcatcttccccctcacctctttcatacggttccaagtca |
351 |
Q |
| |
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||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||| || ||||||||| |
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| T |
34009511 |
ctataaagtcactcacatcagattcaccagtatcatcttccccctcacctacttcatatggatccaagtca |
34009581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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