View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21373_high_10 (Length: 403)

Name: NF21373_high_10
Description: NF21373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21373_high_10
NF21373_high_10
[»] chr3 (12 HSPs)
chr3 (1-384)||(2503317-2503696)
chr3 (164-383)||(2643327-2643549)
chr3 (1-294)||(7332493-7332778)
chr3 (73-165)||(2642977-2643069)
chr3 (1-94)||(2650470-2650565)
chr3 (262-383)||(7332789-7332918)
chr3 (203-302)||(2494080-2494180)
chr3 (94-189)||(2631965-2632061)
chr3 (9-102)||(2483967-2484060)
chr3 (192-257)||(17621590-17621655)
chr3 (192-257)||(17628773-17628838)
chr3 (92-176)||(7437799-7437882)
[»] chr6 (1 HSPs)
chr6 (192-384)||(18756428-18756618)
[»] scaffold0019 (1 HSPs)
scaffold0019 (200-375)||(484-657)


Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 2503696 - 2503317
Alignment:
Q  1 tctttgttgtctcgttccataattaaactcaaccaaactcatattgtcctaggtagagatgcaactcaacggtactatgagttgtatatactttaattat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2503696 tctttgttgtctcgttccataattaaactcaaccaaactcatattgtcctaggtagagatacaactcaacggtactatgagttgtatatactttaattat 2503597  T
Q  101 taatttgcagtaatcaacgctatcataccagagaagtgtgtaaagcaattaagccaactaagctaataacaaacacgagaatgatcatgatatcccaacc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2503596 taatttgcagtaatcaacgctatcataccagagaagtgtgtaaagcaattaagccaactaagctaataacaaacacgagaatgatcatgatatcccaacc 2503497  T
Q  201 tgtcattggaaaactgaagttttcatgttatgagtctgttctctctcaatctctagataagagttgattttaaatcgttcaaaaagaggaaagataggac 300  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2503496 tgtcattggaaaactgaagttttcaagttatgagtctgttctctctcaatctctagataagagttgattttaaatcgttcaaaaagaggaaagataggac 2503397  T
Q  301 ctaggtac-atgaacaactctataactgcacaactatcatcaccaccaaggaaagaaaaggctaattggtaaagaatcctcatta 384  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||    
T  2503396 ctaggtacaatgaacaactctataactgcacaactatcatcaccaccaagg-----aaaggctaattggtaaagaatcctcatta 2503317  T

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Target: chr3; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 164 - 383
Target Start/End: Original strand, 2643327 - 2643549
Alignment:
Q  164 taataacaaacac-gagaatgatcatgatatcccaacctgtcattggaaaactgaagttttcatgttatgagtctgttctctctcaatctctagataa-g 261  Q
    ||||||||||||| |||||||| |||| |||||||| ||||||| |||||||||||||||||| | ||||||||||||||||||  ||||||||||||      
T  2643327 taataacaaacactgagaatgaccatgctatcccaaactgtcatgggaaaactgaagttttcaagatatgagtctgttctctcttgatctctagataact 2643426  T
Q  262 agttgattttaaatcgttcaaaaagaggaaagataggacctagg-tacatgaacaactctataactgcacaactatcatcaccaccaaggaaagaaaagg 360  Q
    ||||||||||| || |||||||||||||| ||| || ||||||| |||||||| ||| |||||| || ||||||||||||||||||||| ||| || |||    
T  2643427 agttgattttatattgttcaaaaagaggatagaaagaacctaggttacatgaaaaaccctataattggacaactatcatcaccaccaagaaaataatagg 2643526  T
Q  361 ctaattggtaaagaatcctcatt 383  Q
    |||||||||||||||||||||||    
T  2643527 ctaattggtaaagaatcctcatt 2643549  T

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Target: chr3; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 7332493 - 7332778
Alignment:
Q  1 tctttgttgtctcgttccataattaaactcaaccaaactcatattgtcctaggtagagatgcaactcaacggtactatgagttgtatatactttaattat 100  Q
    |||||||  |||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||| || |||||||||  |||| ||| || | ||||    
T  7332493 tctttgtcttctcgttccatagttaaactcaacccaactcatattgtcctaagtagagatgcaactcgactgtactatgaagtgtaaatatttcacttat 7332592  T
Q  101 taatttgcagtaatcaacgctatcataccagagaagtgtgtaaagcaattaagccaactaagctaataacaaacac-gagaatgatcatgatatcccaac 199  Q
    ||||||||| ||||||  ||||||||||||||||||||||||   |||      ||||| |||| ||||||||||| |||||||| |||| ||||||||     
T  7332593 taatttgcaataatcactgctatcataccagagaagtgtgta---caa------caactgagctgataacaaacactgagaatgaccatgctatcccaaa 7332683  T
Q  200 ctgtcattggaaaactgaagttttcatgttatgagtctgttctctctcaatctctagataa-gagttgattttaaatcgttcaaaaagaggaaaga 294  Q
    || |||| ||||| |||||| ||||| |  |||||||||||||||||||||||||||| ||  ||||||||||| |||||||||||||||||||||    
T  7332684 ctatcatgggaaagctgaag-tttcaagaaatgagtctgttctctctcaatctctagaaaattagttgattttatatcgttcaaaaagaggaaaga 7332778  T

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Target: chr3; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 73 - 165
Target Start/End: Original strand, 2642977 - 2643069
Alignment:
Q  73 tactatgagttgtatatactttaattattaatttgcagtaatcaacgctatcataccagagaagtgtgtaaagcaattaagccaactaagcta 165  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||| |||||||    
T  2642977 tactatgagtcgtatatactttaattattaatttgcagtaatcaacactatcataccagagaagtgtgtaaagaaattaagtcaattaagcta 2643069  T

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Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 2650470 - 2650565
Alignment:
Q  1 tctttgttgtctcgttccata--attaaactcaaccaaactcatattgtcctaggtagagatgcaactcaacggtactatgagttgtatatacttt 94  Q
    |||||||||||||||||||||  ||||||| |||||||||||||||||||||| | | | |||||||||||| ||||||||||| |||||||||||    
T  2650470 tctttgttgtctcgttccatataattaaacccaaccaaactcatattgtcctaagcaaacatgcaactcaactgtactatgagtcgtatatacttt 2650565  T

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Target: chr3; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 262 - 383
Target Start/End: Original strand, 7332789 - 7332918
Alignment:
Q  262 agttgattttaaatcgttcaaaaagaggaaagataggacctaggta-catgaacaactctataactgcacaactatcatcacca-------ccaaggaaa 353  Q
    |||| |||||| || ||| |||| ||||||||| |||||||||||| ||||||||    ||||| |||||||||||||||||||       ||||| |||    
T  7332789 agttaattttatattgttgaaaacgaggaaagaaaggacctaggtatcatgaacattcttataattgcacaactatcatcaccatttaccaccaagaaaa 7332888  T
Q  354 gaaaaggctaattggtaaagaatcctcatt 383  Q
    ||||||||||||||||||||||||||||||    
T  7332889 gaaaaggctaattggtaaagaatcctcatt 7332918  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 302
Target Start/End: Complemental strand, 2494180 - 2494080
Alignment:
Q  203 tcattggaaaactgaagttttcatgttatgagtctgttctctctcaatctctagata-agagttgattttaaatcgttcaaaaagaggaaagataggacc 301  Q
    |||| |||||||||||||||||| | ||||| | | ||||||| |||||||||||||   | ||||||| | ||| |||||| |||||||||| ||||||    
T  2494180 tcatgggaaaactgaagttttcaagatatgactatattctctcccaatctctagatagctaattgatttaagatctttcaaacagaggaaagaaaggacc 2494081  T
Q  302 t 302  Q
    |    
T  2494080 t 2494080  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 189
Target Start/End: Complemental strand, 2632061 - 2631965
Alignment:
Q  94 taattattaatttgcagtaatcaacgctatcataccagagaagtgtgtaaagcaattaagccaactaagctaataacaaacac-gagaatgatcatg 189  Q
    ||||||||||||||||||||||||| ||||||||| |||  ||||| ||||  ||| ||| | | |||| |||| |||||||| |||||||| ||||    
T  2632061 taattattaatttgcagtaatcaacactatcatactagactagtgtataaaaaaataaagtctattaagataatcacaaacacagagaatgaccatg 2631965  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 2484060 - 2483967
Alignment:
Q  9 gtctcgttccataattaaactcaaccaaactcatattgtcctaggtagagatgcaactcaacggtactatgagttgtatatactttaattatta 102  Q
    ||||||||| || ||||||| |||| |||||| |||| ||||| || |||||||||||||   ||||||||||   ||||||| |||| |||||    
T  2484060 gtctcgttcgatgattaaacccaacgaaactcttattatcctaagtggagatgcaactcacatgtactatgagccatatatacattaactatta 2483967  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 257
Target Start/End: Complemental strand, 17621655 - 17621590
Alignment:
Q  192 atcccaacctgtcattggaaaactgaagttttcatgttatgagtctgttctctctcaatctctaga 257  Q
    ||||||| |||||||||||||| ||| |||| || | ||||| ||| ||||||| |||||||||||    
T  17621655 atcccaaactgtcattggaaaattgaggtttccaagatatgactctattctctcacaatctctaga 17621590  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 257
Target Start/End: Complemental strand, 17628838 - 17628773
Alignment:
Q  192 atcccaacctgtcattggaaaactgaagttttcatgttatgagtctgttctctctcaatctctaga 257  Q
    ||||||| |||||||||||||| ||| |||| || | ||||| ||| ||||||| |||||||||||    
T  17628838 atcccaaactgtcattggaaaattgaggtttccaagatatgactctattctctcacaatctctaga 17628773  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 176
Target Start/End: Original strand, 7437799 - 7437882
Alignment:
Q  92 tttaattattaatttgcagtaatcaacgctatcataccagagaagtgtgtaaagcaattaagccaactaagctaataacaaacac 176  Q
    |||||| |||| |||||| |||||| | |||||||||||||  ||||| |||||||||||||  |  || |||||||||||||||    
T  7437799 tttaataattattttgcactaatca-cactatcataccagactagtgtataaagcaattaagttatttacgctaataacaaacac 7437882  T

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Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 192 - 384
Target Start/End: Complemental strand, 18756618 - 18756428
Alignment:
Q  192 atcccaacctgtcattggaaaactgaagttttcatgttatgagtctgttctctctcaatctctagataag-agttgattttaaatcgttcaaaaagagga 290  Q
    ||||||| |||||||||||||||| | |||| || |  |||| ||| ||||||| ||||||||||||||  |  |||||||| ||| |||||||||||||    
T  18756618 atcccaaactgtcattggaaaactaaggtttccaag--atgattctattctctcacaatctctagataactaagtgattttatatctttcaaaaagagga 18756521  T
Q  291 aagataggacctaggtacatgaacaactctataactgcacaactatcatcaccaccaaggaaa-gaaaaggctaattggtaaagaatcctcatta 384  Q
    || | || ||||||  |||| |  |||||||||| | ||||||||||||||  |||||| ||| ||||||||||||||||| |||| ||||||||    
T  18756520 aacaaagaacctag--acattatgaactctataatttcacaactatcatcagtaccaagaaaaagaaaaggctaattggtagagaagcctcatta 18756428  T

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Target: scaffold0019 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 200 - 375
Target Start/End: Complemental strand, 657 - 484
Alignment:
Q  200 ctgtcattggaaaactgaagttttcatgttatgagtctgttctctctcaatctctagataag-agttgattttaaatcgttcaaaaagaggaaagatagg 298  Q
    |||||||  ||||||||||||||||| | |||||  || ||||||| ||||||||||||||  | ||||||||| ||| ||||||||||||||| | ||     
T  657 ctgtcatcagaaaactgaagttttcaagatatga--ctattctctcacaatctctagataactaattgattttatatctttcaaaaagaggaaacaaaga 560  T
Q  299 acctaggtacatgaacaactctataactgcacaactatcatcaccaccaag-gaaagaaaaggctaattggtaaagaa 375  Q
    ||||||  |||| |  |||||||||| | |||||||||  |||  ||||||  ||||||||| |||||||||| ||||    
T  559 acctag--acattatgaactctataatttcacaactattctcagtaccaagaaaaagaaaagactaattggtagagaa 484  T

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