View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21373_high_13 (Length: 334)
Name: NF21373_high_13
Description: NF21373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21373_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 16 - 316
Target Start/End: Original strand, 34718010 - 34718313
Alignment:
| Q |
16 |
gaagaggaggagtttttagtggtaaaatgataattgtgtcagtc--aaactcagagaagcttaggctagaaattgtgttttttattctaggagaattctc |
113 |
Q |
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| T |
34718010 |
gaagaggaggagtttttagtggtaagatgataattgtgtcagtataaaactcagagaagcttaggctagaaattgtgttttttattctaggagaattctc |
34718109 |
T |
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| Q |
114 |
atataaatgagagttaatatataaagtactcaaaaaataaaa-gaattctcatataaatacaacttaattacaagctagggttgatgttgagcccataaa |
212 |
Q |
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| T |
34718110 |
atataaatgagagttaatatataaagtactcaaaaaataaaaagaattctcatataaatacaacttaattacaagctagggttgatgttgagcccataaa |
34718209 |
T |
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| Q |
213 |
tcatcaactgtcatttattaattctgcaatttataatcctaattaacataacggttacaattatcctatttagcatttctagcttttgtcaataaaacat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34718210 |
tcatcaactgtcatttattaattctgcaatttataatcctaattaacataacggttacaattatcctatttagcatttctagcttttgtcaataaaacat |
34718309 |
T |
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| Q |
313 |
taac |
316 |
Q |
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|||| |
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| T |
34718310 |
taac |
34718313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 18938657 - 18938589
Alignment:
| Q |
20 |
aggaggagtttttagtggtaaaatgataattgtgtcagtcaaactcagagaagcttaggctagaaattgtgtt |
92 |
Q |
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|||||| ||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
18938657 |
aggaggggttttaagtggaaaaatgataattgtgtca----aactcagagaagcttaggctagaaagtgtgtt |
18938589 |
T |
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