View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21373_high_14 (Length: 325)
Name: NF21373_high_14
Description: NF21373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21373_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 74; Significance: 6e-34; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 228 - 313
Target Start/End: Complemental strand, 20131625 - 20131540
Alignment:
| Q |
228 |
gaaaatctctaaatgaaaaactttgaaaggtggtcattttattttaaaaaatgattgtctatgaagatgtttttatcaaacagaat |
313 |
Q |
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| T |
20131625 |
gaaaatctctaaatgaaaaacttcgaaaggtggtcattttattttaaaaaatgattttttatgaagatgtttttatcaaacagaat |
20131540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 20135280 - 20135209
Alignment:
| Q |
17 |
aacaacatcccgaaaaaatgcaccgcgtcattaaatacttgccatatatcctctccgccattacaatgtagg |
88 |
Q |
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| T |
20135280 |
aacaacatcccgaaaaaatgcaccgcgtcattaaatacttgccatatatcctctccgccattacaatgtagg |
20135209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 20131753 - 20131689
Alignment:
| Q |
84 |
gtaggaaaactctatcccctcccattgcagtaaccacaacctgagaaaaaccagcatcatcgatt |
148 |
Q |
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| T |
20131753 |
gtaggaaaactctatcccctcccattagagtaaccacaacctgagaaaaaccagcagcatcgatt |
20131689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 6e-34; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 228 - 313
Target Start/End: Original strand, 44360443 - 44360528
Alignment:
| Q |
228 |
gaaaatctctaaatgaaaaactttgaaaggtggtcattttattttaaaaaatgattgtctatgaagatgtttttatcaaacagaat |
313 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
44360443 |
gaaaatctctaaatgaaaaacttcgaaaggtggtcattttattttaaaaaatgattttttatgaagatgtttttatcaaacagaat |
44360528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 44356791 - 44356862
Alignment:
| Q |
17 |
aacaacatcccgaaaaaatgcaccgcgtcattaaatacttgccatatatcctctccgccattacaatgtagg |
88 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44356791 |
aacaacatcccgaaaaaatgcaccgcgtcattaaatacttgccatatatcctctccgccattacaatgtagg |
44356862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 44360315 - 44360379
Alignment:
| Q |
84 |
gtaggaaaactctatcccctcccattgcagtaaccacaacctgagaaaaaccagcatcatcgatt |
148 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
44360315 |
gtaggaaaactctatcccctcccattagagtaaccacaacctgagaaaaaccagcagcatcgatt |
44360379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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